Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  330  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96894365--96894407
2
21.5
2
100
0
86
48
0
0
51
1.00
96895142--96895225
26
3.2
26
96
0
150
34
4
23
36
1.76
96896666--96896741
26
2.8
26
88
4
98
34
19
13
32
1.90
96896846--96896983
27
5.1
27
83
2
152
18
24
23
34
1.96
96896846--96896983
54
2.5
55
84
2
172
18
24
23
34
1.96
96899078--96899109
15
2.0
17
88
11
50
46
12
12
28
1.78
96902265--96902297
15
2.1
16
88
5
50
33
6
3
57
1.38
96904140--96904278
49
2.9
47
80
6
145
38
17
17
27
1.92
96907104--96907275
86
2.0
85
97
1
326
36
13
5
44
1.69
96915822--96915882
3
20.3
3
89
0
95
27
0
0
72
0.85
96921107--96921149
18
2.3
19
88
11
63
79
9
6
4
1.06
96921107--96921149
19
2.3
19
88
8
61
79
9
6
4
1.06
96921285--96921336
19
2.7
20
82
11
63
65
0
34
0
0.93
96921269--96921348
15
4.9
15
72
20
54
68
0
30
1
0.97
96921445--96921510
26
2.7
25
88
6
91
39
4
9
46
1.56
96928776--96929805
145
7.1
145
78
13
1059
29
7
6
56
1.53
96929170--96929956
296
2.7
294
86
6
1056
29
7
6
56
1.53
96929668--96929943
132
2.1
134
84
4
351
28
6
7
56
1.54
96928776--96929963
572
2.1
565
81
9
1410
29
7
6
56
1.53
96930514--96930572
3
19.7
3
76
13
59
0
30
0
69
0.89
96930511--96930573
13
4.3
15
81
16
71
0
30
0
69
0.88
96930717--96930760
20
2.3
19
92
4
70
4
9
9
77
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96932063--96932108
18
2.6
18
82
3
58
65
0
0
34
0.93
96937402--96937542
72
2.0
72
87
2
203
32
17
27
21
1.96
96939576--96939856
139
2.0
139
92
0
465
28
8
8
54
1.60
96939747--96939968
112
2.0
112
94
0
392
24
10
9
56
1.61
96939858--96940584
138
5.3
138
93
1
1208
27
8
7
56
1.57
96939858--96940584
275
2.6
275
92
1
1208
27
8
7
56
1.57
96940878--96940911
11
3.2
10
91
8
50
58
11
0
29
1.33
96941069--96941133
14
4.4
16
84
13
86
0
30
0
69
0.89
96941066--96941124
19
3.1
19
79
18
68
0
28
0
71
0.87
96941069--96941129
5
12.2
5
76
11
54
0
29
0
70
0.88
96941320--96941347
14
2.0
14
100
0
56
7
7
7
78
1.09
96943283--96943312
15
2.0
15
93
0
51
30
0
3
66
1.07
96953149--96953182
17
1.9
18
88
5
52
61
5
0
32
1.20
96956395--96956448
20
2.8
20
78
13
58
42
1
1
53
1.22
96962119--96962158
9
4.2
9
81
12
53
47
2
2
47
1.29
96962690--96962714
10
2.5
10
100
0
50
92
8
0
0
0.40
96967296--96967342
25
1.9
24
83
12
60
63
6
2
27
1.30
96968293--96968332
17
2.4
17
82
0
53
55
2
12
30
1.50
96972760--96972795
3
12.0
3
100
0
72
0
33
0
66
0.92
96987205--96987291
33
2.6
33
89
8
124
74
14
5
4
1.17
96987234--96987290
18
3.3
18
66
14
57
75
14
7
3
1.14
96987330--96987359
12
2.5
12
100
0
60
10
43
0
46
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96988020--96988051
15
2.1
15
94
0
55
31
0
6
62
1.20
96988068--96988169
37
2.6
37
75
20
93
32
4
4
57
1.41
96989846--96989881
12
3.0
12
87
0
54
25
22
5
47
1.73
96996762--96996985
72
3.1
71
82
5
308
24
14
22
38
1.91
96996846--96997020
70
2.6
66
82
7
194
26
14
23
35
1.93
96996598--96997211
258
2.4
257
95
2
1090
25
14
23
35
1.93
96997020--96997211
71
2.7
69
84
5
242
25
14
23
36
1.93
96996856--96997302
195
2.4
187
82
8
523
25
16
22
35
1.94
96997457--96997491
14
2.5
14
90
0
52
17
20
5
57
1.60
96997382--96998095
161
4.5
165
83
10
731
27
18
21
32
1.97
96997493--96998095
74
7.9
74
72
18
439
27
18
21
31
1.97
96997405--96998095
158
4.4
160
84
9
770
27
19
21
32
1.97
96997635--96998092
76
6.1
75
78
14
453
27
18
21
33
1.96
96997635--96998092
150
3.0
149
78
15
485
27
18
21
33
1.96
96998100--96998344
62
3.8
67
85
9
307
24
17
27
29
1.97
96998029--96998344
60
5.1
63
77
15
241
26
17
26
29
1.97
96998160--96998474
134
2.4
131
83
8
365
27
18
25
28
1.98
96998509--96998652
74
1.9
76
87
4
211
31
20
21
27
1.98
96998417--96998823
169
2.5
165
85
6
535
27
18
21
32
1.97
96998887--96999778
88
10.9
76
69
19
461
28
17
19
35
1.94
96998887--96999567
75
8.5
74
71
18
388
29
17
19
33
1.95
96999169--96999195
14
1.9
14
100
0
54
14
14
7
62
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96999170--96999203
14
2.4
14
90
0
50
17
20
5
55
1.62
96999205--96999567
79
4.5
77
77
9
287
28
17
19
34
1.94
96999009--96999778
254
3.1
241
84
7
912
27
17
19
35
1.94
96999549--96999610
30
2.1
30
90
6
99
19
9
29
41
1.83
97000435--97000509
38
1.9
40
91
5
127
76
13
8
2
1.12
97000453--97000523
33
2.3
30
92
7
115
77
11
8
2
1.09
97000435--97000523
33
2.5
36
77
15
114
75
14
6
3
1.14
97000562--97000591
12
2.5
12
100
0
60
10
43
0
46
1.37
97001308--97001409
37
2.6
37
75
20
93
32
4
4
57
1.41
97005533--97005563
15
2.0
16
93
6
55
22
12
0
64
1.27
97008489--97008703
111
2.0
108
86
6
303
49
10
6
33
1.62
97009033--97009091
29
2.0
29
96
0
109
22
13
0
64
1.28
97009875--97009958
34
2.5
33
83
7
98
30
5
7
55
1.51
97009897--97009965
34
2.0
34
97
0
129
33
4
5
56
1.43
97009980--97010022
20
2.1
21
83
12
54
44
2
2
51
1.27
97017182--97017219
18
2.2
18
85
4
51
34
7
0
57
1.28
97017355--97017385
16
1.9
16
93
0
53
35
6
9
48
1.62
97020354--97020388
18
1.9
18
88
0
52
28
8
17
45
1.77
97020888--97020931
17
2.6
17
79
10
54
40
11
2
45
1.53
97021060--97021093
17
2.0
17
94
0
59
32
11
5
50
1.63
97021401--97021526
63
2.0
63
100
0
252
30
11
17
41
1.84
97023940--97024036
3
31.7
3
71
13
56
28
2
5
63
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97024126--97024203
23
3.2
25
78
18
69
30
6
2
60
1.35
97024144--97024203
26
2.4
25
81
15
72
30
6
1
61
1.31
97024287--97024332
3
14.7
3
86
8
65
32
4
2
60
1.28
97026651--97026686
12
3.0
12
87
0
54
30
22
2
44
1.67
97031672--97031959
75
3.9
75
94
1
483
32
18
17
31
1.94
97032001--97032228
73
3.1
73
86
5
280
27
16
22
33
1.95
97031805--97032203
206
2.0
201
84
4
523
30
17
19
32
1.95
97032001--97032686
75
9.2
74
71
12
378
27
17
20
34
1.95
97032709--97032962
54
4.7
54
97
1
474
29
14
18
36
1.92
97032709--97032958
107
2.3
109
97
2
468
30
14
18
36
1.91
97035152--97035197
3
14.7
3
86
8
65
32
4
2
60
1.28
97039463--97039501
18
2.2
18
95
0
69
51
7
5
35
1.53
97039894--97039972
31
2.4
33
85
8
99
59
7
1
31
1.33
97040974--97041050
34
2.3
34
83
0
91
27
12
14
45
1.81
97043182--97043234
27
2.0
27
88
0
79
13
26
32
28
1.93
97043324--97043734
130
3.1
132
91
4
654
58
5
7
28
1.48
97043575--97043635
23
2.7
23
80
10
63
60
3
4
31
1.34
97043733--97043758
12
2.2
12
100
0
52
46
23
7
23
1.78
97044244--97044269
11
2.4
11
100
0
52
15
0
7
76
0.99
97044237--97044310
19
4.2
19
74
20
70
20
5
4
70
1.24
97044255--97044323
19
3.3
21
75
17
72
20
7
2
69
1.25
97044347--97044400
27
2.0
27
96
0
99
24
33
31
11
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97046198--97046241
22
2.0
22
95
0
79
27
47
9
15
1.76
97046287--97046384
22
4.5
21
77
14
81
8
1
31
59
1.34
97048876--97048961
3
28.3
3
73
19
65
65
1
3
30
1.17
97048876--97048958
12
6.8
12
76
16
73
65
1
3
30
1.17
97048881--97048961
18
4.4
18
79
13
76
65
1
3
29
1.17
97048876--97048962
27
3.4
27
71
19
78
65
1
3
29
1.16
97049294--97049344
20
2.5
20
90
3
75
68
25
0
5
1.12
97049294--97049390
21
4.5
21
73
15
81
60
29
1
8
1.32
97049519--97049545
4
6.8
4
100
0
54
22
0
0
77
0.76
97049886--97050611
44
16.5
44
78
8
626
26
24
18
30
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335