genome.fa.s5.2.7.7.80.10.50.1000.319.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  319  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93865960--93865993	17	1.9	18	94	5	61	20	23	17	38	1.93
93867683--93867716	2	17.0	2	100	0	68	50	0	0	50	1.00
93869410--93869519	26	4.2	26	94	0	184	35	3	23	37	1.73
93875210--93875318	26	4.2	26	95	1	184	33	4	24	36	1.76
93877098--93877383	136	2.1	137	96	0	520	24	18	25	32	1.97
93883592--93883789	71	2.8	70	92	3	294	33	17	28	20	1.95
93883658--93883775	41	3.1	41	60	28	98	32	17	28	21	1.96
93883626--93883789	71	2.3	71	100	0	328	35	17	28	18	1.94
93891161--93891358	71	2.8	70	92	3	294	33	17	28	20	1.95
93891227--93891344	41	3.1	41	60	28	98	32	17	28	21	1.96
93891195--93891358	71	2.3	71	100	0	328	35	17	28	18	1.94
93895686--93895735	18	2.7	19	81	6	59	50	0	2	48	1.12
93899100--93899140	16	2.6	16	88	0	55	48	0	2	48	1.14
93900332--93900358	2	13.5	2	100	0	54	51	0	0	48	1.00
93900705--93900757	25	2.1	25	82	6	63	43	11	15	30	1.81
93901740--93901774	17	2.1	17	100	0	70	45	25	17	11	1.81
93902869--93902933	18	3.4	19	73	26	57	52	0	0	47	1.00
93913555--93913583	6	4.8	6	100	0	58	34	0	0	65	0.93
93915123--93915185	10	6.7	9	78	20	67	73	3	1	22	1.07
93915123--93915183	9	6.3	10	78	17	58	75	3	1	19	1.03
93915140--93915183	19	2.4	18	88	11	63	79	2	2	15	0.93
93921834--93921901	9	7.4	9	76	3	55	39	1	2	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93921913--93921963	20	2.6	19	84	12	68	29	0	0	70	0.87
93921913--93921967	17	2.9	19	81	10	69	32	0	0	67	0.91
93922402--93922434	17	1.9	18	88	11	52	48	0	9	42	1.35
93922491--93922528	16	2.4	16	87	12	53	60	0	2	36	1.11
93926334--93926421	29	2.9	31	72	8	90	25	12	11	51	1.73
93930682--93930708	14	1.9	14	100	0	54	37	11	7	44	1.68
93932673--93932777	27	3.9	27	80	9	99	35	18	23	22	1.96
93934377--93934432	26	2.2	26	96	0	103	37	26	5	30	1.79
93940592--93940750	27	5.9	27	83	11	184	33	21	25	19	1.97
93940610--93940753	54	2.7	54	94	2	245	34	22	25	18	1.96
93942339--93942395	26	2.2	26	90	6	80	38	28	3	29	1.73
93944562--93944600	2	19.5	2	94	0	69	48	2	0	48	1.15
93946651--93946692	2	21.0	2	95	0	75	47	0	2	50	1.14
93956612--93956652	2	20.5	2	100	0	82	51	0	0	48	1.00
93959813--93959922	26	4.2	26	96	2	195	33	3	25	37	1.74
93963485--93963620	26	5.2	26	94	0	218	36	22	5	35	1.77
93964895--93964937	2	21.5	2	100	0	86	51	0	0	48	1.00
93969637--93969787	53	2.8	53	89	4	214	29	27	16	25	1.97
93976655--93976805	53	2.8	53	89	4	214	29	27	16	25	1.97
93979090--93979150	30	2.0	30	87	0	86	39	8	22	29	1.83
93979568--93979607	16	2.5	16	100	0	80	17	20	27	35	1.95
93986529--93986697	92	1.9	91	93	2	295	20	22	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93986534--93986705	46	3.8	46	78	13	203	20	22	29	27	1.98
93989666--93989712	14	3.4	14	82	5	51	14	2	2	80	0.89
93989826--93990056	118	2.0	118	92	0	390	28	31	17	22	1.97
93990722--93990811	41	2.1	43	85	4	121	18	12	35	33	1.88
93990905--93990955	20	2.8	18	86	13	77	82	0	3	13	0.81
93990912--93990953	20	2.1	20	100	0	84	80	0	4	14	0.86
93990899--93990962	13	5.2	12	72	20	53	81	0	3	15	0.82
93990899--93990962	18	3.5	17	75	21	58	81	0	3	15	0.82
93997361--93997388	10	2.8	10	100	0	56	71	7	10	10	1.31
94004234--94004271	8	5.0	8	84	12	53	76	0	0	23	0.79
94005280--94005522	32	7.6	32	83	1	290	33	20	12	32	1.91
94005286--94005522	95	2.5	96	88	1	350	33	20	13	32	1.91
94005286--94005549	95	2.8	97	79	8	308	32	21	12	33	1.91
94017539--94017581	10	4.4	9	80	13	50	18	4	2	74	1.10
94018638--94018667	15	2.0	15	100	0	60	80	0	0	20	0.72
94020312--94020354	22	2.0	20	86	8	59	11	11	60	16	1.59
94020312--94020354	10	4.1	10	85	11	59	11	11	60	16	1.59
94025496--94025556	30	2.0	30	100	0	122	36	16	24	22	1.94
94025653--94025835	72	2.5	72	94	0	312	23	18	27	30	1.97
94025662--94025893	72	3.2	71	88	2	232	25	17	27	29	1.97
94032827--94032998	40	4.3	40	80	3	186	25	26	22	26	2.00
94036714--94036790	31	2.5	31	89	0	118	18	31	29	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94037787--94038060	32	8.5	32	84	2	244	30	22	13	32	1.93
94037817--94038060	32	7.6	32	86	0	317	32	22	13	31	1.92
94037823--94038060	96	2.5	96	89	0	359	32	22	13	31	1.92
94039408--94039445	20	1.9	20	84	10	51	31	21	2	44	1.66
94058578--94058618	21	2.0	21	90	0	64	29	21	29	19	1.98
94068676--94068787	38	2.9	38	100	0	224	64	10	5	19	1.44
94069908--94069966	31	2.0	29	83	6	73	40	8	1	49	1.43
94070141--94070167	10	2.7	10	100	0	54	40	7	7	44	1.60
94070181--94070222	21	2.0	22	90	4	68	50	30	2	16	1.58
94070188--94070261	28	2.6	28	72	8	69	47	29	4	18	1.67
94070288--94070325	13	2.8	14	88	4	51	42	28	7	21	1.81
94070580--94070628	22	2.1	24	81	7	57	51	12	8	28	1.68
94071081--94071621	228	2.4	226	85	4	709	30	15	29	24	1.96
94071626--94073323	228	7.5	228	88	2	2570	30	15	27	26	1.96
94071081--94073323	450	5.0	450	93	1	3713	30	15	27	26	1.96
94076923--94076995	20	3.7	19	77	15	78	56	5	0	38	1.23
94076940--94077013	27	2.8	27	81	6	80	54	4	0	41	1.19
94076940--94077019	26	3.0	26	78	12	74	55	5	0	40	1.22
94079051--94079085	18	1.9	18	88	0	52	48	14	11	25	1.77
94079129--94079186	17	3.4	17	75	0	62	44	15	10	29	1.79
94085470--94085494	10	2.5	10	100	0	50	36	0	0	64	0.94
94085554--94085581	7	4.0	7	100	0	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94086632--94086768	41	3.3	41	89	6	206	16	21	26	35	1.94
94086754--94086821	24	2.7	25	80	11	86	10	13	19	57	1.64
94087208--94087286	36	2.2	37	86	6	117	45	18	3	31	1.68
94089283--94089338	27	2.1	27	100	0	112	41	12	28	17	1.86
94089602--94089629	11	2.5	11	100	0	56	21	42	7	28	1.79
94090305--94090329	13	1.9	13	100	0	50	48	12	0	40	1.40
94097840--94097883	18	2.4	18	80	0	52	50	13	2	34	1.55
94098207--94098289	36	2.4	36	89	4	125	45	14	4	34	1.66
94100285--94100367	27	3.1	27	100	0	166	40	12	28	18	1.86
94108006--94108046	21	2.0	21	90	0	64	31	19	26	21	1.97
94111547--94111586	20	2.1	19	90	4	62	35	7	5	52	1.51
94112923--94112962	19	2.0	22	85	14	59	32	47	2	17	1.61
94113024--94113163	27	5.2	28	85	9	150	35	22	24	17	1.95
94113024--94113163	54	2.6	54	88	2	183	35	22	24	17	1.95
94114782--94114891	26	4.2	26	92	0	175	36	24	6	32	1.81
94116086--94116110	2	12.5	2	100	0	50	52	0	0	48	1.00
94116950--94116995	24	1.9	24	90	0	74	15	21	26	36	1.93
94120050--94120088	20	1.9	21	94	5	71	35	20	7	35	1.81
94121330--94121361	15	2.1	15	100	0	64	43	18	12	25	1.85
94121993--94122186	43	4.5	42	83	5	219	32	22	16	28	1.96
94121993--94122186	86	2.3	86	85	5	250	32	22	16	28	1.96
94128101--94128255	43	3.6	43	90	1	240	10	24	32	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94128229--94128325	45	2.2	45	84	3	124	20	20	26	31	1.97
94133508--94133648	56	2.5	55	77	6	158	26	29	28	15	1.96
94139932--94140143	32	6.6	32	82	0	253	30	21	13	34	1.92
94146999--94147176	17	9.9	18	85	4	220	35	15	12	36	1.85
94146999--94147168	35	4.8	35	90	3	225	35	14	12	36	1.85
94146999--94147175	52	3.3	53	88	7	243	36	15	12	36	1.85
94147566--94147673	26	4.2	26	93	0	189	32	8	25	34	1.86
94149159--94149211	26	2.0	26	85	7	72	37	22	15	24	1.92
94150598--94151598	207	4.8	207	94	0	1673	29	22	17	30	1.97
94151604--94151892	84	3.4	83	86	9	413	23	22	23	31	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335