Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  9  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3052684--3052721
16
2.4
16
90
0
58
63
2
7
26
1.35
3055557--3055731
46
3.8
45
77
13
194
30
29
19
21
1.97
3055565--3055735
93
1.8
93
92
2
290
29
29
19
21
1.98
3057855--3057889
14
2.4
15
95
4
63
0
0
17
82
0.66
3061796--3061834
21
1.9
20
94
5
69
17
2
0
79
0.84
3061796--3061882
5
16.8
5
73
21
65
18
4
2
74
1.09
3061791--3061882
25
3.8
25
78
15
79
18
4
2
75
1.08
3068816--3068886
35
2.0
35
100
0
142
49
14
14
22
1.78
3075213--3075271
22
2.5
22
84
13
66
61
1
1
35
1.16
3075217--3075656
149
2.9
149
88
4
656
57
7
6
27
1.53
3077059--3077173
44
2.6
45
83
2
133
36
13
21
28
1.91
3078427--3078464
12
3.0
13
84
3
51
71
0
2
26
1.00
3078604--3078659
2
28.0
2
100
0
112
50
0
0
50
1.00
3082918--3083089
93
1.8
93
96
0
317
27
29
21
20
1.98
3082911--3083086
46
3.8
46
79
12
216
28
29
21
20
1.98
3092309--3092376
15
4.5
15
68
15
50
41
0
2
55
1.15
3092365--3092409
18
2.4
19
88
3
65
60
4
0
35
1.17
3098208--3098250
18
2.3
18
80
4
50
58
6
0
34
1.25
3099796--3099832
2
18.5
2
100
0
74
51
0
0
48
1.00
3102430--3102482
3
17.7
3
90
7
81
30
66
3
0
1.10
3104619--3104643
9
2.8
9
100
0
50
0
12
0
88
0.53
3104667--3104700
17
2.0
17
88
0
50
23
11
14
50
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3106980--3107018
19
2.1
19
85
4
53
43
15
2
38
1.60
3108633--3108663
15
2.0
16
93
6
55
12
3
12
70
1.27
3108660--3108692
5
6.8
5
86
6
50
60
0
0
39
0.97
3109343--3109654
46
7.0
46
88
6
444
22
23
15
38
1.92
3109567--3109642
38
2.0
38
100
0
152
21
26
18
34
1.96
3111787--3111838
11
4.7
11
76
9
52
63
3
0
32
1.12
3117662--3117851
48
3.7
52
76
13
151
35
18
25
21
1.95
3117662--3117908
49
4.8
53
75
12
196
36
17
24
21
1.95
3117669--3117851
101
1.8
102
85
5
264
34
19
25
21
1.96
3117662--3117910
102
2.4
100
77
11
256
36
17
24
21
1.95
3118100--3118130
16
1.9
16
93
0
53
41
0
22
35
1.54
3122261--3122301
21
2.0
21
100
0
82
34
0
0
65
0.93
3124243--3124287
20
2.2
20
84
7
56
44
2
8
44
1.47
3124250--3124294
10
4.4
10
88
5
63
44
2
8
44
1.47
3125144--3125172
8
3.6
8
100
0
58
37
0
0
62
0.96
3126469--3126525
15
3.9
15
88
2
89
35
0
12
52
1.39
3126908--3126981
21
3.5
21
83
5
78
13
21
25
39
1.90
3128255--3128296
2
21.0
2
100
0
84
50
0
0
50
1.00
3129517--3129544
6
4.7
6
100
0
56
50
0
0
50
1.00
3130285--3130318
16
2.1
17
88
5
52
79
0
2
17
0.86
3130332--3130388
11
5.4
10
81
8
60
70
0
7
22
1.11
3130342--3130388
21
2.2
21
88
7
69
72
0
4
23
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3131770--3131805
18
2.1
17
89
5
54
47
0
0
52
1.00
3132009--3132052
11
3.5
13
76
17
56
65
0
0
34
0.93
3141317--3141358
15
2.8
15
85
0
57
26
19
4
50
1.67
3143697--3143734
18
2.1
18
100
0
76
36
0
10
52
1.36
3170314--3170369
19
2.9
19
77
20
55
55
1
0
42
1.10
3170312--3170352
21
2.0
21
90
0
64
53
2
0
43
1.13
3170688--3170739
26
2.0
26
100
0
104
42
11
23
23
1.86
3179244--3179274
16
1.9
16
93
0
53
16
0
12
70
1.16
3183688--3183734
21
2.2
22
84
3
60
48
2
10
38
1.50
3186877--3186928
21
2.3
23
72
21
56
50
1
3
44
1.31
3197035--3197101
31
2.2
31
94
2
118
13
7
19
59
1.57
3209758--3209800
18
2.4
18
80
7
52
55
2
0
41
1.12
3210025--3210062
14
2.5
15
83
12
51
31
0
2
65
1.06
3211151--3211188
20
1.9
20
84
10
51
39
0
2
57
1.12
3216544--3216626
42
2.0
42
92
4
141
39
15
28
15
1.88
3220520--3220582
28
2.3
27
79
15
67
50
0
4
44
1.23
3222171--3222322
52
2.9
52
81
6
164
25
17
27
30
1.97
3226227--3226277
6
8.5
6
93
0
75
47
15
19
17
1.83
3226265--3226370
45
2.3
47
83
4
126
40
18
22
17
1.91
3227638--3227670
16
2.1
16
88
5
50
48
3
0
48
1.17
3232660--3232765
21
4.9
22
83
5
119
35
25
23
15
1.94
3232660--3232766
42
2.5
42
87
3
160
35
25
23
15
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3233136--3233189
15
3.5
15
87
2
81
51
11
0
37
1.37
3234925--3234970
23
2.0
23
84
12
60
45
10
6
36
1.65
3234932--3234976
23
2.0
23
82
8
56
40
13
8
37
1.76
3237820--3237946
42
3.0
42
86
6
170
29
26
14
29
1.95
3237905--3238028
47
2.7
46
83
2
158
29
26
16
27
1.97
3238053--3238201
31
4.8
31
89
0
217
26
26
18
27
1.98
3238177--3238305
50
2.5
51
88
5
190
27
22
14
35
1.93
3242198--3242233
13
2.8
14
84
16
51
27
25
0
47
1.52
3242185--3242225
18
2.2
19
87
12
59
29
24
0
46
1.53
3242348--3242482
39
3.4
38
73
8
101
28
28
20
23
1.99
3242719--3242757
18
2.1
19
90
4
62
48
10
0
41
1.37
3244002--3244035
16
2.0
17
88
11
52
2
23
11
61
1.43
3244063--3244103
5
8.0
5
97
2
73
58
0
0
41
0.98
3244055--3244106
8
5.9
10
73
26
55
55
0
0
44
0.99
3244056--3244103
15
3.0
16
90
9
80
58
0
0
41
0.98
3248613--3248648
13
2.8
14
84
16
51
27
25
0
47
1.52
3248600--3248640
18
2.2
19
87
12
59
29
24
0
46
1.53
3248763--3248897
39
3.4
38
73
8
101
28
28
20
23
1.99
3249136--3249174
18
2.1
19
90
4
62
48
10
0
41
1.37
3250484--3250523
5
8.0
5
100
0
80
60
0
0
40
0.97
3250862--3250945
41
2.0
41
93
0
141
19
17
25
38
1.93
3254101--3254260
42
3.7
42
79
14
168
28
28
14
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3254193--3254350
47
3.3
47
83
3
149
30
27
14
27
1.95
3254379--3254494
31
3.7
31
83
8
164
27
27
18
26
1.98
3254534--3254568
7
5.1
7
96
3
63
25
28
0
45
1.54
3263137--3263287
53
2.8
53
89
4
214
29
27
16
25
1.97
3270653--3270803
53
2.8
53
89
4
214
29
27
16
25
1.97
3273332--3273396
21
3.2
20
74
12
71
10
26
21
41
1.86
3273314--3273402
39
2.3
39
98
0
169
12
24
23
39
1.89
3276467--3276745
121
2.3
120
89
3
420
46
6
12
34
1.68
3293562--3293594
2
16.5
2
100
0
66
51
0
0
48
1.00
3299208--3299251
21
2.1
21
87
8
63
52
2
0
45
1.13
3306085--3306256
75
2.4
73
83
8
217
33
23
11
31
1.90
3306090--3306256
35
4.6
35
86
7
192
33
23
10
31
1.89
3313580--3313751
75
2.4
73
83
8
217
33
23
11
31
1.90
3313585--3313751
35
4.6
35
86
7
192
33
23
10
31
1.89
3317820--3317927
44
2.4
44
87
3
144
29
23
13
33
1.93
3325367--3325396
9
3.3
9
95
0
51
30
0
3
66
1.07
3325405--3325442
18
2.1
19
85
5
51
44
2
2
50
1.30
3330689--3330763
37
2.0
37
100
0
150
36
21
5
37
1.76
3345683--3345725
18
2.5
16
82
14
50
37
4
6
51
1.50
3350208--3350236
3
9.7
3
100
0
58
68
0
0
31
0.89
3350555--3350594
4
10.0
4
100
0
80
50
25
0
25
1.50
3354908--3354938
8
3.9
8
100
0
62
87
0
12
0
0.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3355943--3355983
20
2.0
20
86
9
57
46
0
4
48
1.23
3359414--3359445
15
2.1
15
100
0
64
12
25
18
43
1.85
3381413--3381467
30
1.9
28
85
10
76
25
9
0
65
1.22
3389681--3389809
46
2.9
44
84
7
147
24
27
22
24
2.00
3389802--3389964
38
4.2
38
90
1
227
29
25
22
22
1.99
3395322--3395450
46
2.9
44
85
7
156
24
29
22
23
1.99
3396615--3396781
35
4.6
36
84
7
196
34
24
10
30
1.90
3396611--3396781
75
2.4
74
84
7
217
33
23
11
30
1.90
3399760--3399888
44
2.8
45
82
4
152
34
13
24
27
1.93
3406669--3406835
35
4.6
35
85
7
201
33
24
10
31
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335