genome.fa.s5.2.7.7.80.10.50.1000.216.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  216  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64496282--64496335	19	2.9	18	83	5	63	5	12	1	79	0.98
64501449--64501551	29	3.6	29	81	2	118	21	16	33	29	1.95
64506036--64506194	43	3.7	43	78	9	164	23	18	27	30	1.98
64510015--64510201	50	3.8	49	79	4	178	31	25	17	26	1.97
64514229--64514365	39	3.5	39	89	4	179	24	29	21	24	1.99
64522077--64522265	40	4.8	39	77	9	163	24	24	28	22	2.00
64530111--64530295	79	2.3	82	83	7	229	24	24	27	23	2.00
64530112--64530303	40	4.8	40	79	7	151	24	24	28	22	2.00
64530111--64530328	79	2.7	79	79	6	183	24	23	27	24	2.00
64533916--64534027	29	3.9	29	79	5	129	27	16	31	24	1.97
64534794--64534823	14	2.1	15	93	6	53	26	6	6	60	1.47
64536884--64536916	16	2.1	16	100	0	66	48	21	6	24	1.72
64538420--64538521	29	3.6	29	75	6	109	27	16	31	24	1.96
64539715--64540455	370	2.0	370	98	0	1437	27	14	23	34	1.93
64540438--64540514	34	2.3	34	82	8	95	23	24	22	29	1.99
64543164--64543677	257	2.0	257	98	0	1003	26	9	22	42	1.84
64553670--64553842	46	3.7	46	78	10	199	21	20	27	30	1.98
64553667--64553837	93	1.8	93	92	0	288	21	20	28	29	1.98
64574790--64574953	40	4.2	40	86	8	212	24	21	28	25	1.99
64574790--64574953	79	2.1	79	85	6	217	24	21	28	25	1.99
64581426--64581474	21	2.4	21	83	10	57	34	22	2	40	1.66
64581754--64581789	17	2.1	17	90	10	56	36	0	16	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64582349--64582433	42	2.0	42	100	0	170	32	0	21	45	1.52
64588617--64588760	39	3.7	39	91	0	234	26	20	29	24	1.99
64596493--64596636	39	3.7	39	87	0	216	26	20	28	25	1.99
64596494--64596676	78	2.3	79	85	1	251	24	21	28	25	1.99
64601077--64601261	80	2.3	80	80	10	204	24	24	23	27	2.00
64601077--64601263	40	4.7	40	76	5	177	25	24	22	27	2.00
64609202--64609386	40	4.6	40	84	2	237	25	25	22	25	2.00
64613326--64613373	17	2.8	18	78	6	55	58	6	0	35	1.23
64615498--64615539	16	2.6	16	100	0	84	66	0	33	0	0.92
64616245--64616275	7	4.4	7	95	0	53	48	35	0	16	1.46
64616314--64616377	28	2.2	29	80	2	76	45	28	1	25	1.63
64616911--64617004	21	4.4	21	71	9	66	48	30	2	18	1.59
64617279--64617443	40	4.1	40	86	0	213	26	22	21	30	1.99
64617114--64617371	141	1.8	140	85	5	369	27	20	18	33	1.96
64617905--64617953	22	2.1	24	92	7	84	32	20	14	32	1.92
64617917--64617969	22	2.4	22	83	3	61	35	13	13	37	1.83
64620158--64620301	64	2.2	64	95	1	252	45	3	6	44	1.47
64622470--64622531	17	3.6	17	75	22	58	67	0	6	25	1.14
64622458--64622533	18	4.3	19	70	14	56	65	0	7	26	1.19
64622990--64623041	22	2.4	23	81	12	65	48	28	3	19	1.66
64631088--64631119	16	2.1	15	94	5	55	50	28	18	3	1.62
64631533--64631647	28	4.2	28	81	3	128	20	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64631843--64633141	649	2.0	649	97	0	2472	31	15	18	34	1.92
64638829--64638876	24	2.0	24	100	0	96	20	45	12	20	1.83
64640109--64640217	28	4.0	28	85	7	152	19	24	21	34	1.96
64640108--64640218	55	2.0	55	87	6	163	18	24	20	36	1.95
64642465--64642530	28	2.4	28	86	0	87	22	22	25	28	1.99
64647882--64648054	46	3.7	46	77	13	210	21	19	29	29	1.98
64652077--64652234	40	4.0	40	79	4	151	26	24	26	22	2.00
64652077--64652264	80	2.3	80	79	12	206	26	23	27	22	2.00
64655496--64655597	29	3.5	29	90	0	150	23	33	15	27	1.95
64662484--64662691	49	4.3	49	93	2	332	30	9	31	28	1.88
64662484--64662691	97	2.2	98	90	3	332	30	9	31	28	1.88
64671354--64671479	40	3.2	39	80	6	139	21	25	24	28	1.99
64671293--64671479	80	2.3	80	78	12	204	22	27	24	25	2.00
64679426--64679551	40	3.2	39	80	6	139	21	25	24	28	1.99
64679365--64679551	80	2.3	80	78	12	204	22	27	24	25	2.00
64684135--64684220	44	2.0	44	85	0	118	29	11	11	47	1.75
64687347--64687554	40	5.2	39	82	3	202	25	25	23	25	2.00
64687347--64687553	80	2.6	80	82	3	238	25	26	23	25	2.00
64695382--64695589	40	5.2	39	82	3	202	25	25	23	25	2.00
64695382--64695588	80	2.6	80	82	3	238	25	26	23	25	2.00
64703436--64703643	40	5.2	39	82	3	202	25	25	23	25	2.00
64703436--64703642	80	2.6	80	82	3	238	25	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64708960--64709001	19	2.3	19	87	4	59	26	0	2	71	0.98
64709073--64709141	35	2.0	35	82	5	86	36	2	4	56	1.34
64709270--64709517	42	5.9	42	85	2	273	25	17	30	27	1.97
64709266--64709522	85	3.0	84	80	6	270	25	18	29	26	1.98
64711443--64711749	49	6.3	49	91	2	469	29	29	7	32	1.86
64715771--64715866	40	2.4	40	80	3	113	28	28	16	27	1.97
64722331--64722466	47	2.8	49	82	7	154	27	30	16	25	1.96
64722331--64722597	46	5.7	47	74	12	185	25	29	17	27	1.97
64722337--64722642	46	6.6	47	72	11	152	25	29	17	28	1.98
64730848--64731057	40	5.2	40	88	2	305	21	28	24	25	1.99
64738983--64739192	40	5.2	40	88	2	305	21	28	24	25	1.99
64747426--64747459	16	2.2	15	89	5	50	55	0	0	44	0.99
64749372--64749398	2	13.5	2	100	0	54	51	0	0	48	1.00
64751325--64751385	30	2.0	30	83	0	77	31	22	8	37	1.84
64753599--64753766	40	4.2	40	82	1	185	24	26	22	26	2.00
64761550--64761717	40	4.2	40	82	1	185	24	26	22	26	2.00
64766891--64766951	30	2.0	30	83	0	77	31	22	8	37	1.84
64769870--64769936	26	2.6	26	88	4	91	43	14	19	22	1.87
64769996--64770150	65	2.4	65	83	0	184	34	22	18	24	1.96
64774407--64774437	16	1.9	16	93	0	53	35	22	0	41	1.54
64774404--64774443	20	2.0	20	85	0	53	37	22	0	40	1.54
64774604--64774807	55	3.8	53	80	6	196	22	25	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64775379--64775437	25	2.4	25	97	0	109	38	23	0	37	1.55
64779695--64779857	39	4.2	39	89	0	245	24	32	20	22	1.98
64787877--64787907	16	1.9	16	93	0	53	35	22	0	41	1.54
64787874--64787913	20	2.0	20	85	0	53	37	22	0	40	1.54
64788102--64788303	55	3.8	52	80	7	183	21	25	17	35	1.95
64794910--64795050	40	3.5	40	92	1	230	29	27	19	23	1.98
64797770--64797817	21	2.3	21	96	0	87	56	14	4	25	1.56
64800071--64800210	40	3.5	41	85	6	171	23	30	21	25	1.99
64808135--64808264	40	3.3	40	87	5	176	24	29	22	23	1.99
64816667--64816711	22	2.0	22	100	0	90	31	28	8	31	1.88
64828848--64829086	50	4.8	49	78	9	250	26	17	23	31	1.97
64828848--64829086	101	2.4	99	86	6	315	26	17	23	31	1.97
64830656--64830736	28	2.9	28	79	1	92	37	20	20	20	1.95
64831820--64831852	17	1.9	17	88	11	50	63	0	27	9	1.24
64838507--64838606	28	3.7	28	76	9	100	38	19	20	23	1.94
64838512--64838622	55	2.0	55	84	3	143	39	18	19	21	1.92
64839037--64839066	16	1.9	16	93	6	53	6	20	20	53	1.67
64839709--64839741	17	1.9	17	93	0	57	66	0	27	6	1.15
64845685--64845791	39	2.7	39	86	2	151	26	20	28	24	1.99
64845691--64845829	40	3.5	40	88	2	183	23	21	30	24	1.99
64845690--64845855	79	2.1	79	80	6	185	24	21	28	25	1.99
64853702--64853839	40	3.5	40	88	4	183	23	21	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64860034--64860093	30	2.0	29	87	9	86	36	8	26	28	1.85
64860746--64860931	49	3.8	49	85	5	268	26	19	25	28	1.99
64860747--64860937	98	1.9	98	96	0	355	25	19	26	28	1.99
64862978--64863028	26	2.0	26	85	11	70	56	0	1	41	1.10
64873456--64873502	22	2.1	21	81	14	51	57	25	0	17	1.40
64874282--64874364	43	1.9	43	82	0	103	33	26	15	24	1.95
64885304--64885488	40	4.6	40	86	5	216	25	23	25	25	2.00
64885357--64885512	80	2.0	79	82	8	192	27	21	25	25	1.99
64890905--64890932	11	2.5	11	100	0	56	92	0	7	0	0.37
64892186--64892288	29	3.6	28	81	5	116	21	16	33	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335