genome.fa.s5.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  160  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47107787--47107850	33	2.0	33	84	9	87	29	25	20	25	1.99
47107787--47107850	32	2.0	32	84	9	85	29	25	20	25	1.99
47108166--47108222	26	2.2	26	83	3	69	28	19	17	35	1.94
47109470--47109501	16	2.1	16	94	5	57	81	0	18	0	0.70
47109470--47109501	5	6.2	5	92	7	55	81	0	18	0	0.70
47110540--47110583	19	2.4	18	85	7	54	40	9	0	50	1.34
47112877--47112922	20	2.3	21	82	14	62	26	17	28	28	1.98
47120711--47120758	24	2.0	25	88	12	73	25	20	16	37	1.93
47123231--47123300	21	3.2	21	66	18	61	20	14	27	38	1.91
47123227--47123312	45	1.9	45	97	0	163	24	13	25	36	1.93
47126185--47126269	27	3.1	27	86	6	118	36	23	25	14	1.93
47130793--47130845	27	2.0	27	100	0	106	26	30	3	39	1.74
47133782--47133932	40	3.8	40	77	11	141	26	24	27	21	2.00
47133819--47133948	40	3.2	40	79	2	154	23	23	28	23	2.00
47133781--47133948	80	2.1	80	82	6	207	26	23	27	22	2.00
47148649--47148681	13	2.6	13	90	4	50	48	12	0	39	1.40
47151581--47151661	5	15.8	5	69	23	53	75	0	4	19	0.98
47151582--47151661	27	2.8	27	80	14	88	75	0	5	20	0.99
47151601--47151662	20	3.1	19	81	11	70	77	0	4	17	0.94
47151620--47151662	11	3.9	11	80	20	54	81	0	2	16	0.79
47153965--47154148	40	4.6	40	86	4	223	23	22	27	26	2.00
47158199--47158402	40	5.1	40	89	2	286	24	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47168490--47168739	49	5.1	49	95	0	448	34	8	26	30	1.86
47168808--47168894	37	2.3	36	94	5	147	20	19	33	26	1.97
47170692--47171040	40	8.8	40	96	1	623	25	20	27	26	1.99
47170692--47171040	79	4.4	80	95	2	623	25	20	27	26	1.99
47170692--47171053	118	3.0	119	95	1	627	25	20	27	26	1.99
47175126--47175375	49	5.1	49	95	0	448	34	8	26	30	1.86
47175444--47175530	37	2.3	36	94	5	147	20	19	33	26	1.97
47177498--47177715	40	5.5	40	87	3	282	25	23	26	24	2.00
47180155--47180208	21	2.6	21	93	0	90	9	16	51	22	1.72
47184043--47184075	13	2.6	13	90	4	50	48	12	0	39	1.40
47187214--47187321	54	2.0	54	96	0	198	44	14	11	29	1.80
47190299--47190353	27	2.1	27	83	10	69	52	14	18	14	1.74
47195143--47195320	50	3.6	49	84	3	194	29	26	18	24	1.98
47195145--47195328	101	1.8	99	87	2	269	28	27	19	25	1.98
47198097--47198130	15	2.2	16	94	5	61	61	17	8	11	1.54
47200856--47201040	50	3.7	49	83	2	217	30	25	18	25	1.98
47200863--47201048	101	1.9	99	84	4	248	30	26	17	25	1.98
47207033--47207199	40	4.2	40	81	2	176	23	26	22	26	2.00
47208025--47208070	17	2.5	19	74	22	53	34	23	17	23	1.96
47215037--47215203	40	4.2	40	82	2	185	24	26	22	26	2.00
47216024--47216069	17	2.5	19	74	22	53	34	23	17	23	1.96
47220024--47220820	397	2.0	398	93	0	1344	27	23	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47227494--47227721	47	4.8	47	78	4	183	24	14	28	32	1.95
47230656--47230702	20	2.3	20	92	7	78	36	10	19	34	1.86
47230750--47230844	25	3.8	25	83	4	95	27	22	21	29	1.99
47231838--47231919	42	1.9	43	85	2	112	35	25	15	23	1.94
47246192--47246251	30	2.0	30	90	0	93	28	25	8	38	1.84
47248661--47248804	46	3.1	46	72	14	134	29	29	19	21	1.98
47254062--47254160	27	3.7	27	86	9	132	38	19	24	18	1.93
47254276--47254351	27	2.9	27	83	13	79	30	14	21	34	1.93
47261949--47262040	27	3.4	27	88	5	132	36	22	23	16	1.94
47265923--47265961	2	19.5	2	100	0	78	51	0	0	48	1.00
47273963--47274038	11	7.5	11	71	16	74	35	11	19	32	1.88
47273958--47274038	20	4.1	20	96	0	153	34	11	19	34	1.87
47273958--47274030	9	7.4	9	71	17	56	34	9	20	35	1.85
47274087--47274239	24	6.4	24	93	2	245	29	20	22	27	1.99
47274445--47274506	31	2.0	31	90	3	99	37	16	22	24	1.94
47282072--47282150	20	4.1	20	91	6	135	34	11	20	34	1.88
47282073--47282149	38	2.0	38	94	5	136	35	11	20	32	1.89
47282077--47282132	11	5.5	11	71	16	57	35	12	19	32	1.89
47282073--47282164	38	2.4	38	87	10	116	35	11	19	32	1.88
47282198--47282362	23	7.0	24	88	6	239	29	21	22	27	1.99
47282198--47282362	47	3.5	47	89	6	237	29	21	22	27	1.99
47284264--47284446	40	4.6	40	82	4	181	27	22	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47284306--47284415	39	2.8	38	87	6	148	26	22	28	22	1.99
47292347--47292526	40	4.6	39	81	10	165	26	22	27	23	2.00
47292386--47292495	39	2.9	37	88	10	152	24	22	28	24	2.00
47301008--47301156	80	1.9	80	81	2	183	22	30	24	22	1.99
47301049--47301156	40	2.7	38	85	8	128	21	29	25	23	1.99
47306343--47306455	44	2.6	43	86	6	149	32	25	18	23	1.97
47308457--47308554	40	2.5	40	84	0	115	28	22	27	21	1.99
47308491--47308620	40	3.3	39	84	4	172	23	23	28	25	1.99
47311259--47311301	22	2.0	22	85	0	59	39	27	20	11	1.88
47314801--47314899	28	3.5	29	94	5	168	32	27	12	28	1.92
47322570--47322668	28	3.5	29	94	5	168	32	27	12	28	1.92
47331328--47331395	25	2.7	25	76	0	73	45	14	20	19	1.85
47331367--47331426	31	1.9	31	93	0	102	46	13	18	21	1.83
47331846--47332418	188	3.0	188	94	1	963	23	22	19	35	1.96
47331828--47332422	27	22.1	27	88	1	845	23	22	19	34	1.96
47332410--47332508	27	3.7	26	77	5	74	26	7	23	43	1.79
47332437--47332523	27	3.2	27	80	0	111	27	6	22	42	1.79
47332437--47332549	54	2.1	54	83	3	138	27	7	23	42	1.79
47332499--47332726	54	4.2	54	89	1	251	38	8	21	31	1.84
47332543--47332726	27	6.8	27	88	0	287	40	8	22	28	1.84
47332500--47332726	81	2.8	81	85	2	251	38	8	22	30	1.84
47332736--47332885	27	5.6	27	81	6	169	29	8	21	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47332732--47332884	81	1.9	81	84	1	198	30	7	22	39	1.82
47339760--47339888	50	2.6	50	82	10	158	24	30	20	24	1.99
47339707--47340027	46	6.8	45	76	8	189	24	30	18	26	1.98
47340643--47340718	38	2.0	38	100	0	152	42	21	2	34	1.67
47343977--47344040	31	2.1	31	85	11	87	21	23	17	37	1.94
47344232--47344398	24	7.0	24	92	3	257	26	22	22	28	1.99
47344231--47344398	71	2.3	71	90	4	257	26	22	22	29	1.99
47344455--47344527	9	7.4	9	71	17	56	35	20	9	34	1.85
47344447--47344527	20	4.1	20	96	0	153	34	19	11	34	1.87
47344447--47344522	11	7.5	11	71	16	74	32	19	11	35	1.88
47350680--47350742	31	2.1	31	87	3	92	22	23	17	36	1.95
47350934--47351099	24	7.0	24	91	4	248	27	22	21	28	1.99
47351155--47351227	9	7.4	9	71	17	56	35	20	9	34	1.85
47351148--47351227	20	4.0	20	96	0	151	33	20	11	35	1.88
47351148--47351222	11	7.4	11	71	17	72	32	20	12	36	1.89
47354217--47354306	39	2.3	39	90	5	137	31	25	10	33	1.89
47364620--47364815	53	3.6	54	77	7	200	19	23	19	37	1.94
47369162--47369334	54	3.2	53	87	4	231	28	24	8	38	1.84
47369162--47369334	81	2.1	81	85	4	224	28	24	8	38	1.84
47369143--47369334	27	7.1	27	79	4	190	30	23	7	38	1.83
47369297--47369488	81	2.4	81	78	7	203	38	22	9	29	1.86
47369386--47369567	54	3.3	54	76	6	177	40	17	8	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47369333--47369562	27	8.4	27	72	8	126	39	17	10	32	1.84
47370480--47370547	24	2.8	25	88	2	102	23	25	23	27	2.00
47370480--47370560	24	3.3	25	86	6	96	27	22	23	27	1.99
47370695--47370782	42	2.1	42	93	0	149	34	15	17	32	1.91
47370810--47370893	31	2.7	31	87	1	125	28	15	26	29	1.96
47373626--47373730	53	2.0	53	84	0	138	40	18	22	19	1.92
47375254--47375357	28	3.7	28	74	12	88	27	16	29	25	1.97
47378250--47378285	18	1.9	19	88	5	56	63	0	25	11	1.27
47379583--47379714	59	2.3	58	97	1	246	37	14	24	24	1.92
47379553--47379714	88	1.8	89	90	1	263	35	14	24	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335