genome.fa.s5.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  101  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32018437--32018472	2	18.0	2	88	0	54	44	0	5	50	1.25
32023067--32023125	23	2.5	24	81	13	61	15	5	6	72	1.23
32024488--32024531	20	2.1	21	87	4	63	61	0	0	38	0.96
32025382--32025421	18	2.2	18	86	0	53	27	5	0	67	1.11
32025320--32025429	47	2.3	49	77	11	122	30	7	2	59	1.39
32025591--32025763	92	1.9	92	81	3	213	45	8	12	33	1.73
32030731--32030768	17	2.2	17	100	0	76	39	5	21	34	1.76
32033117--32033274	86	1.8	86	93	0	271	32	17	15	35	1.91
32035936--32036010	37	2.0	37	100	0	150	44	10	5	40	1.62
32039732--32039798	27	2.6	26	83	6	91	62	0	2	34	1.10
32039734--32039798	25	2.5	26	85	7	80	63	0	3	33	1.10
32039741--32039798	25	2.2	26	84	6	82	63	0	3	32	1.11
32041663--32041720	27	2.1	27	100	0	116	44	6	12	36	1.68
32042111--32042164	20	2.6	21	82	11	67	35	0	7	57	1.27
32042150--32042198	3	17.3	3	76	19	52	28	2	0	69	1.00
32042154--32042192	11	3.5	11	92	0	69	28	2	0	69	1.02
32042150--32042191	19	2.2	19	87	8	59	26	2	0	71	0.98
32045556--32045582	10	2.7	10	100	0	54	51	11	18	18	1.74
32047317--32047370	20	2.6	21	82	11	67	35	0	7	57	1.27
32055630--32055664	18	1.9	18	88	0	52	34	17	14	34	1.90
32055623--32055893	36	7.3	36	70	12	172	35	16	13	34	1.87
32055710--32055893	18	10.2	18	74	13	155	36	16	13	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32055704--32055905	72	2.8	71	79	5	219	36	15	12	34	1.86
32056079--32056228	45	3.3	45	89	3	221	40	20	19	20	1.92
32056637--32056688	5	10.2	5	87	4	59	36	26	0	36	1.57
32058078--32058130	23	2.3	23	84	12	65	37	3	1	56	1.28
32058098--32058150	22	2.3	23	84	9	65	37	5	3	52	1.43
32059370--32059402	2	16.5	2	100	0	66	51	0	0	48	1.00
32078792--32078851	30	2.0	30	90	0	93	30	25	8	36	1.85
32084868--32084910	20	2.2	20	82	0	50	44	2	2	51	1.27
32086326--32086385	30	2.0	30	90	0	93	30	25	8	36	1.85
32092950--32093013	18	3.6	18	78	0	74	37	10	10	40	1.76
32092968--32093097	18	6.7	19	67	15	70	41	15	10	33	1.80
32093271--32093379	45	2.4	45	89	0	164	42	20	18	19	1.90
32094428--32094467	4	10.5	4	84	10	57	0	27	0	72	0.85
32094423--32094463	19	2.3	18	91	8	66	0	29	0	70	0.87
32094536--32094568	2	17.0	2	93	6	59	51	0	0	48	1.00
32095932--32095984	17	3.0	17	78	10	61	37	5	15	41	1.70
32097748--32097797	23	2.0	23	81	11	55	56	12	12	20	1.67
32101822--32101849	2	14.0	2	100	0	56	50	0	0	50	1.00
32107639--32107771	3	42.3	3	68	20	60	26	7	1	64	1.29
32107628--32107684	27	2.0	30	83	10	75	28	8	3	59	1.44
32107642--32107688	10	4.5	11	82	17	57	27	8	0	63	1.23
32107730--32107772	9	5.0	9	94	5	72	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32107730--32107772	8	5.1	8	97	2	68	23	0	0	76	0.78
32108827--32108896	35	2.0	35	100	0	140	25	25	20	28	1.99
32108945--32109027	32	2.6	32	100	0	166	54	18	3	24	1.59
32108969--32109040	32	2.5	27	88	11	81	52	19	2	25	1.59
32108933--32109072	59	2.3	62	78	8	153	51	20	2	25	1.61
32109224--32109277	17	3.2	15	76	20	54	46	46	3	3	1.38
32112283--32112333	22	2.3	21	77	12	50	64	3	1	29	1.22
32112448--32112505	21	2.8	21	86	2	73	51	1	10	36	1.46
32113420--32113449	15	1.9	16	93	6	53	90	0	10	0	0.47
32113417--32113452	8	4.6	8	89	6	56	86	0	13	0	0.58
32113805--32113888	26	3.2	26	96	0	150	33	4	25	36	1.77
32117930--32118081	58	2.7	58	88	3	229	33	18	15	32	1.92
32118194--32118366	56	3.1	55	93	2	285	36	17	14	31	1.90
32118194--32118366	55	3.1	54	91	4	283	36	17	14	31	1.90
32118305--32118615	167	1.9	168	88	0	480	37	17	16	28	1.91
32118528--32118561	13	2.5	14	90	9	61	61	5	14	17	1.52
32118327--32118633	86	3.6	85	75	8	304	38	17	16	27	1.91
32119450--32119567	45	2.7	44	85	6	150	16	26	12	44	1.83
32129585--32129638	27	2.0	27	100	0	108	29	14	29	25	1.95
32130985--32131042	21	2.8	21	86	2	73	51	1	10	36	1.46
32131065--32131129	33	2.0	32	85	11	87	58	9	1	30	1.39
32132071--32132120	25	2.1	23	82	14	57	24	0	4	72	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32135510--32135720	64	3.2	64	62	20	142	29	27	18	25	1.98
32135476--32135762	137	2.1	137	97	0	538	31	25	19	23	1.98
32136010--32136063	26	2.1	27	82	6	67	24	14	24	37	1.93
32136027--32136102	26	2.8	27	82	4	82	27	13	22	36	1.91
32137549--32137632	26	3.2	26	94	3	143	36	23	3	35	1.73
32141060--32141109	25	2.0	25	88	0	73	58	6	32	4	1.41
32141458--32141492	11	3.2	11	88	11	54	8	14	11	65	1.46
32141938--32144222	761	3.0	761	98	0	4446	30	15	17	36	1.92
32147019--32147054	13	2.8	13	91	0	54	36	33	19	11	1.87
32148049--32148177	43	3.0	42	78	4	143	28	25	15	30	1.96
32150152--32150222	29	2.4	30	81	13	94	32	2	16	47	1.61
32152003--32152028	7	3.7	7	100	0	52	42	11	15	30	1.82
32155866--32155936	31	2.3	31	83	9	83	45	5	9	39	1.61
32159130--32159192	31	2.0	31	100	0	126	28	23	15	31	1.96
32159414--32159438	2	12.5	2	100	0	50	52	0	0	48	1.00
32164091--32164139	17	2.6	19	81	9	57	59	4	4	32	1.35
32165079--32165143	18	3.4	18	73	19	69	56	3	7	32	1.43
32168681--32168727	21	2.2	22	78	17	55	44	4	17	34	1.68
32170504--32170528	2	12.5	2	100	0	50	52	0	0	48	1.00
32170830--32170883	24	2.2	26	83	12	69	62	7	5	24	1.42
32172459--32172488	14	2.1	14	93	0	51	20	40	13	26	1.89
32172521--32172993	44	10.6	43	74	11	353	27	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32172521--32172993	89	5.3	89	77	9	437	27	21	21	30	1.98
32172564--32172993	179	2.4	179	87	1	621	26	21	21	30	1.98
32175604--32175683	40	2.0	40	100	0	160	37	15	17	30	1.90
32184188--32184240	26	2.0	26	100	0	106	43	22	7	26	1.80
32186189--32186227	20	2.0	20	89	0	60	48	15	17	17	1.81
32188450--32188539	3	29.7	3	97	2	171	65	0	33	1	1.00
32188560--32188599	21	1.9	21	94	0	71	22	30	20	27	1.98
32190863--32190892	2	15.0	2	100	0	60	50	0	0	50	1.00
32195885--32196095	64	3.2	64	62	20	151	29	26	18	26	1.98
32195851--32196137	137	2.1	137	98	0	556	31	25	19	24	1.98
32197905--32198040	26	5.2	26	94	0	236	36	25	5	33	1.78
32202086--32202371	137	2.1	136	98	0	545	31	24	19	24	1.98
32202119--32202329	64	3.2	64	62	20	151	29	26	18	26	1.98
32202618--32202671	26	2.1	27	82	6	67	24	14	24	37	1.93
32204145--32204280	26	5.2	26	93	0	227	36	24	5	33	1.79
32205909--32205981	36	2.0	36	91	0	119	23	10	6	58	1.55
32222234--32222286	26	2.0	27	85	7	74	24	15	22	37	1.92
32227245--32227278	14	2.5	14	90	4	52	76	0	2	20	0.92
32230930--32230977	20	2.5	20	86	3	62	64	2	6	27	1.28
32231001--32231030	15	2.0	15	93	0	51	40	10	0	50	1.36
32232879--32232916	20	1.9	20	88	0	58	42	2	0	55	1.14
32238818--32238870	23	2.2	24	83	3	63	60	7	1	30	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32239670--32239814	44	3.3	42	73	14	114	35	20	22	20	1.96
32239643--32239859	88	2.5	88	85	3	269	36	21	21	20	1.95
32240022--32240128	43	2.5	42	84	3	124	35	26	18	19	1.95
32240058--32240303	86	2.8	85	84	6	350	34	23	22	19	1.97
32239979--32240517	216	2.5	216	87	4	716	34	23	22	19	1.97
32240146--32240423	129	2.2	129	90	1	432	33	23	21	21	1.97
32240274--32240558	87	3.3	85	88	4	376	34	22	23	20	1.97
32241581--32241625	21	2.2	21	88	4	65	6	13	0	80	0.91
32242388--32242475	3	29.0	3	86	6	124	31	3	0	64	1.10
32242582--32242612	16	1.9	16	93	0	53	19	3	3	74	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335