Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  169  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50071968--50072006
17
2.3
17
81
0
51
71
0
2
25
0.98
50072283--50072334
26
1.9
27
85
14
72
30
3
3
61
1.32
50072903--50072961
30
2.0
30
86
0
82
22
30
15
32
1.94
50073620--50073666
21
2.2
21
100
0
94
25
4
14
55
1.58
50073722--50073767
23
2.0
23
82
0
56
41
2
6
50
1.40
50091895--50091927
17
2.0
17
94
5
59
21
6
24
48
1.72
50094854--50094914
31
2.0
31
100
0
122
36
19
9
34
1.85
50096355--50096482
64
2.0
64
100
0
256
37
9
17
35
1.82
50097932--50097975
23
2.0
22
86
13
63
38
6
11
43
1.67
50098222--50098255
12
2.9
12
86
4
52
32
0
0
67
0.91
50098257--50098296
18
2.2
18
86
8
55
67
12
0
20
1.22
50098425--50098465
16
2.6
16
84
0
55
68
9
0
21
1.18
50098459--50098499
11
3.7
11
80
0
55
56
9
14
19
1.66
50100313--50100341
14
2.0
15
93
6
51
62
0
10
27
1.28
50100651--50100687
2
18.5
2
100
0
74
51
0
0
48
1.00
50102685--50102848
88
1.9
88
84
5
224
21
21
20
36
1.95
50103117--50103290
44
4.0
44
72
10
149
21
19
21
36
1.95
50117576--50117633
26
2.2
27
84
3
73
41
0
1
56
1.09
50120692--50120730
21
1.9
20
84
5
51
17
20
43
17
1.88
50132263--50132296
16
2.2
16
94
5
61
73
0
5
20
1.04
50137515--50137574
22
2.8
21
80
5
66
16
33
28
21
1.95
50137524--50137608
22
3.9
22
73
4
73
15
34
23
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50140285--50140327
2
21.5
2
95
0
77
48
2
0
48
1.14
50146758--50146798
21
2.0
21
90
0
64
19
29
21
29
1.98
50152392--50152454
30
2.1
30
90
0
99
55
14
3
26
1.54
50152484--50152526
22
2.0
22
85
0
59
55
9
13
20
1.66
50153694--50153866
38
4.6
38
77
5
181
36
27
20
15
1.93
50164825--50164879
27
2.0
27
96
0
101
27
34
0
38
1.57
50165290--50165362
24
3.0
24
85
0
101
35
23
28
12
1.91
50169256--50169301
23
2.0
23
86
0
65
26
28
26
19
1.99
50176810--50176960
53
2.8
53
89
4
214
25
16
27
29
1.97
50184323--50184473
53
2.8
53
89
4
214
25
16
27
29
1.97
50198504--50198555
16
3.2
16
81
8
52
63
1
0
34
1.06
50208322--50208523
101
2.0
101
99
0
395
47
10
15
26
1.78
50211859--50211907
12
3.8
12
75
15
53
24
2
8
65
1.31
50211861--50211919
27
2.2
27
81
6
66
30
3
6
59
1.40
50223057--50223128
36
2.0
36
100
0
144
27
19
11
41
1.85
50233232--50233270
20
2.0
19
85
5
51
23
5
12
58
1.54
50233232--50233274
22
2.1
19
87
12
59
23
4
11
60
1.50
50233347--50233371
12
2.1
12
100
0
50
48
8
12
32
1.69
50234405--50234500
34
2.9
33
86
6
122
47
1
13
37
1.50
50238078--50238104
12
2.2
12
100
0
54
11
22
33
33
1.89
50238207--50238244
18
2.1
18
90
0
58
42
10
23
23
1.85
50241745--50241773
2
14.5
2
100
0
58
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50249588--50249671
27
3.1
26
69
8
69
55
8
8
27
1.58
50250067--50250110
22
2.0
22
100
0
88
40
9
0
50
1.34
50258140--50258183
2
22.0
2
100
0
88
50
0
0
50
1.00
50259834--50259876
20
2.2
19
84
12
52
32
2
0
65
1.06
50266644--50266697
26
2.1
26
82
6
65
38
14
11
35
1.82
50269260--50269288
5
5.8
5
100
0
58
79
20
0
0
0.74
50278079--50278126
3
16.0
3
100
0
96
66
0
0
33
0.92
50278744--50278834
29
3.1
28
75
9
76
30
7
3
58
1.42
50278847--50278893
17
2.6
19
80
19
64
25
4
0
70
1.05
50278849--50278923
20
3.9
19
76
11
64
30
4
1
64
1.20
50282577--50282618
20
2.2
19
83
12
50
26
0
2
71
0.98
50284520--50284553
16
2.1
17
88
5
52
64
2
2
29
1.22
50285323--50285395
30
2.4
31
88
8
107
35
1
0
63
1.04
50285337--50285395
10
5.6
11
71
16
54
35
1
0
62
1.05
50285325--50285410
30
3.0
28
82
12
95
36
1
2
60
1.17
50298868--50298959
28
3.4
28
79
10
102
33
14
25
27
1.94
50298983--50299080
51
1.9
51
89
0
151
34
13
24
27
1.93
50300758--50300907
41
3.7
41
82
1
212
28
26
23
22
1.99
50308825--50308974
41
3.7
41
83
1
212
28
27
23
21
1.99
50318104--50318321
40
5.4
40
82
4
208
26
21
26
25
1.99
50326682--50326726
10
4.5
10
86
5
56
68
2
4
24
1.19
50327989--50328058
9
7.4
9
78
12
52
44
1
0
54
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50328009--50328054
10
4.4
11
81
10
51
36
0
0
63
0.95
50330852--50330951
48
2.1
48
98
0
191
38
21
14
27
1.91
50333251--50333290
6
6.7
6
94
0
71
52
30
0
17
1.45
50335171--50335209
18
2.2
18
85
0
51
0
7
20
71
1.10
50336743--50336767
8
3.1
8
100
0
50
64
0
0
36
0.94
50339440--50339471
15
2.0
17
88
11
50
34
18
21
25
1.96
50341372--50341403
15
2.1
15
100
0
64
59
21
6
12
1.55
50341894--50341934
7
5.2
8
88
8
50
68
2
0
29
1.03
50341894--50341928
7
4.7
7
89
10
52
71
0
0
28
0.86
50342462--50342529
9
7.6
9
84
0
73
45
20
7
26
1.77
50342461--50342531
27
2.6
27
82
4
81
45
21
7
26
1.77
50342747--50342793
19
2.5
19
96
0
85
42
12
17
27
1.85
50343093--50343141
23
2.2
22
82
10
55
6
12
2
79
0.99
50344108--50344147
11
3.6
11
83
12
55
42
0
0
57
0.98
50351239--50351389
40
3.8
39
82
2
142
23
27
22
25
2.00
50351239--50351389
80
1.9
79
83
6
198
23
27
22
25
2.00
50359248--50359398
40
3.8
39
82
2
142
23
27
22
25
2.00
50359248--50359398
80
1.9
79
83
6
198
23
27
22
25
2.00
50362235--50362282
22
2.2
22
84
0
60
41
4
18
35
1.70
50363657--50363877
46
4.8
48
77
11
198
26
19
30
23
1.98
50366107--50366133
14
1.9
14
100
0
54
14
0
3
81
0.82
50371389--50371416
5
5.6
5
100
0
56
82
0
0
17
0.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50374124--50374560
225
2.0
221
93
1
739
29
13
19
36
1.91
50380171--50380226
21
2.7
21
80
0
67
30
33
7
28
1.84
50380623--50380730
53
2.0
53
89
3
164
52
12
9
25
1.69
50390254--50390306
12
4.2
12
80
19
56
39
0
0
60
0.97
50393491--50393676
40
4.7
40
88
5
252
26
27
22
24
2.00
50401518--50401691
78
2.2
80
86
10
234
27
27
20
25
1.99
50401518--50401694
40
4.5
39
87
9
218
27
26
20
25
1.99
50403360--50403510
40
3.8
40
77
13
141
25
24
27
22
2.00
50403397--50403526
40
3.2
40
81
2
163
23
23
28
24
2.00
50412286--50412417
29
4.6
29
84
1
140
25
17
32
25
1.97
50414665--50414794
40
3.2
40
81
2
163
23
23
28
24
2.00
50416304--50416354
3
17.0
3
100
0
102
33
0
0
66
0.92
50438746--50438793
24
2.0
24
91
0
78
18
35
14
31
1.91
50450294--50450458
44
3.7
44
80
12
201
28
29
20
21
1.98
50450295--50450461
91
1.8
91
93
2
291
28
29
20
21
1.98
50450881--50450940
30
2.0
30
90
0
93
30
25
8
36
1.85
50457826--50457999
44
3.8
49
78
13
172
29
27
20
22
1.99
50457831--50457999
93
1.8
91
92
2
284
28
28
20
21
1.98
50465352--50465519
46
3.7
45
74
12
153
29
28
19
22
1.98
50465354--50465522
92
1.8
92
87
2
250
29
28
18
22
1.98
50468858--50468972
27
4.3
27
89
0
185
31
23
7
37
1.83
50468691--50469092
27
14.9
27
77
4
177
37
22
8
31
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50468790--50469029
81
3.0
81
77
3
234
35
22
8
33
1.85
50468697--50469037
81
4.2
81
74
5
222
37
22
7
31
1.83
50469076--50469298
27
8.3
27
85
0
275
34
17
20
27
1.95
50469021--50469271
54
4.6
54
82
4
249
36
18
17
27
1.93
50469022--50469299
81
3.4
80
79
5
274
35
17
18
27
1.94
50469701--50469757
6
9.3
6
75
17
55
17
17
15
49
1.81
50471563--50471735
93
1.9
93
90
2
276
27
30
21
20
1.98
50471556--50471731
46
3.8
46
76
11
180
28
29
21
20
1.98
50471607--50471750
46
3.1
45
73
11
130
28
29
21
20
1.98
50477854--50477884
5
6.2
5
92
0
53
0
16
0
83
0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335