genome.fa.s5.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  176  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52859194--52859291	42	2.3	43	80	7	110	47	27	1	23	1.58
52861623--52861692	36	1.9	36	97	0	131	44	10	25	20	1.82
52866292--52866373	24	3.6	23	70	20	73	47	0	4	47	1.23
52869618--52869763	51	2.9	49	84	3	202	27	25	20	26	1.99
52870010--52870063	27	2.0	27	85	0	72	38	14	7	38	1.75
52872442--52872627	47	3.9	47	88	5	282	29	31	7	31	1.85
52872596--52872666	35	2.0	35	97	0	133	29	25	11	33	1.91
52872442--52872630	98	2.0	96	90	4	301	29	31	8	31	1.87
52872503--52872756	129	2.0	129	91	0	409	28	29	8	33	1.87
52872631--52872792	47	3.4	47	97	0	297	28	27	7	37	1.84
52872549--52872792	82	2.8	83	87	7	328	28	28	8	35	1.86
52872451--52872792	176	1.9	178	89	2	535	28	29	8	33	1.86
52879777--52879896	56	2.2	56	96	1	224	25	21	14	39	1.91
52880662--52880711	22	2.3	22	96	0	91	32	16	22	30	1.95
52885036--52885215	49	3.7	49	80	2	193	27	20	27	25	1.99
52891710--52891770	30	2.0	30	83	0	77	31	22	8	37	1.84
52892609--52892777	50	3.6	46	76	10	171	26	18	29	24	1.98
52894196--52894235	20	2.0	20	90	0	62	20	15	10	55	1.68
52894802--52894957	77	2.0	78	93	1	269	40	21	12	25	1.88
52896327--52896394	34	2.0	34	100	0	136	47	17	2	32	1.63
52897325--52897449	43	2.9	43	87	0	151	34	25	14	25	1.94
52901176--52901401	40	5.7	40	89	4	305	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52904627--52904709	42	2.0	42	100	0	166	30	14	28	26	1.95
52906493--52906622	47	2.8	46	81	13	160	30	29	19	21	1.97
52906501--52906641	46	3.0	44	78	14	135	29	29	19	22	1.98
52912053--52912198	40	3.6	41	82	10	167	23	21	28	26	1.99
52912053--52912221	80	2.1	80	80	9	186	25	20	27	26	1.99
52916168--52916306	57	2.4	57	81	10	151	29	24	16	29	1.97
52921290--52921339	23	2.2	22	82	10	57	0	30	4	66	1.10
52929294--52929569	50	5.5	50	81	2	266	31	26	16	24	1.96
52931959--52932070	29	3.9	29	89	3	165	21	16	33	29	1.95
52931959--52932070	57	1.9	58	87	5	165	21	16	33	29	1.95
52932510--52932538	15	1.9	15	100	0	58	41	0	0	58	0.98
52935201--52935309	37	2.9	37	94	0	182	27	31	18	22	1.97
52935456--52935899	48	8.9	49	88	5	619	32	25	5	36	1.80
52935456--52935899	152	3.0	149	89	4	686	32	25	5	36	1.80
52935456--52935899	100	4.5	97	90	3	615	32	25	5	36	1.80
52940342--52940374	2	17.0	2	87	6	50	48	0	3	48	1.17
52949908--52949940	18	1.9	17	88	11	50	42	12	15	30	1.83
52950179--52950463	27	10.7	27	80	5	285	38	19	9	31	1.85
52950179--52950463	80	3.6	81	82	3	317	38	19	9	31	1.85
52950179--52950489	54	5.8	54	83	3	353	38	19	10	30	1.86
52950428--52950502	27	2.8	27	89	0	105	37	18	17	26	1.93
52952061--52952112	21	2.5	21	93	0	86	9	26	38	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52959691--52959841	67	2.2	68	83	9	193	22	29	15	31	1.95
52967409--52967471	26	2.3	27	81	8	74	36	23	11	28	1.89
52967579--52967689	27	4.2	26	79	4	105	18	18	23	38	1.93
52969660--52969883	40	5.6	40	84	3	288	25	27	22	24	2.00
52969684--52969883	83	2.5	80	87	2	283	27	28	22	23	1.99
52974689--52974757	28	2.5	28	95	2	122	18	10	27	43	1.82
52975392--52975552	27	6.0	27	83	0	214	32	8	19	39	1.81
52975395--52975545	54	2.8	54	92	0	248	31	7	21	40	1.80
52975538--52975788	27	9.3	27	84	0	313	39	8	22	29	1.83
52975403--52975572	81	2.1	81	77	2	180	34	7	20	38	1.81
52975538--52975788	54	4.6	54	91	0	385	39	8	22	29	1.83
52977120--52977149	15	2.0	15	100	0	60	26	33	13	26	1.93
52980862--52981042	46	3.9	46	81	9	233	20	21	29	27	1.98
52980864--52981034	93	1.8	93	96	0	315	20	22	29	27	1.98
52983990--52984068	15	5.4	15	77	10	83	10	17	13	58	1.63
52983981--52984067	29	3.0	29	81	8	95	10	17	16	56	1.67
52986442--52986622	46	3.9	46	80	9	224	20	22	29	27	1.99
52986444--52986614	93	1.8	93	94	0	306	20	22	29	26	1.98
52993171--52993430	27	9.7	27	85	2	265	41	21	7	29	1.80
52993171--52993429	134	1.9	134	84	1	349	41	21	7	29	1.80
52993171--52993444	107	2.5	106	84	4	316	41	20	7	29	1.79
52993467--52993607	27	5.3	27	84	0	167	34	17	19	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52993997--52994058	22	2.8	22	85	7	81	22	25	20	30	1.98
52994217--52994320	27	3.9	26	81	6	109	19	23	20	37	1.94
52994492--52994560	6	11.3	6	75	14	61	18	18	13	49	1.79
52994447--52994506	25	2.4	25	88	0	84	21	16	13	48	1.80
52994464--52994546	31	2.7	31	88	0	121	19	20	13	46	1.82
52996456--52996716	27	9.7	27	83	2	265	39	22	7	29	1.82
52996613--52996768	81	1.9	81	80	5	181	37	23	8	29	1.85
52996645--52996768	27	4.6	26	75	4	95	37	25	8	28	1.86
52996754--52996895	27	5.3	27	86	0	194	33	17	21	28	1.96
52997190--52997251	22	2.8	22	88	7	90	20	22	24	32	1.98
52997410--52997518	27	4.1	27	85	5	132	19	22	22	35	1.96
52997638--52997693	25	2.2	25	87	0	76	25	17	10	46	1.80
52997657--52997739	31	2.7	31	82	0	103	19	18	13	49	1.79
52997685--52997753	6	11.3	6	70	14	52	17	15	15	50	1.78
53007925--53008098	46	3.8	44	76	13	172	21	20	28	28	1.98
53010844--53011014	63	2.7	63	80	6	193	26	23	23	25	2.00
53019144--53019246	29	3.6	28	81	5	116	21	16	33	29	1.95
53026943--53027045	29	3.6	28	81	5	116	21	16	33	29	1.95
53033062--53033191	40	3.2	40	77	13	142	24	26	24	23	2.00
53033078--53033229	40	3.8	40	80	5	155	22	26	24	26	2.00
53033078--53033229	80	1.9	80	83	5	200	22	26	24	26	2.00
53039356--53039400	21	2.1	21	83	0	54	46	13	6	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53043261--53043322	17	3.7	17	80	4	81	30	0	12	56	1.37
53043257--53043323	33	2.0	33	100	0	134	34	0	11	53	1.38
53043257--53043305	16	3.0	16	76	5	62	36	0	10	53	1.35
53057677--53057750	29	2.6	29	88	0	112	39	5	22	32	1.77
53060147--53060194	25	1.9	25	86	0	69	33	25	16	25	1.96
53060238--53060276	20	2.0	20	94	0	69	33	12	20	33	1.91
53060327--53060493	23	7.1	23	92	2	262	28	21	20	29	1.98
53060326--53060500	24	7.4	23	91	2	251	29	21	21	28	1.98
53060326--53060493	47	3.6	46	89	3	264	29	21	20	29	1.98
53060707--53060770	31	2.1	31	87	0	92	37	15	21	25	1.93
53066258--53066347	18	5.0	17	77	16	85	74	2	22	1	0.99
53066281--53066355	6	11.0	7	77	16	61	74	0	25	0	0.82
53066260--53066347	4	22.0	4	71	25	62	73	2	22	1	1.01
53066260--53066355	22	4.2	22	83	10	95	72	2	23	1	1.01
53066258--53066342	22	3.6	24	82	12	97	75	2	21	1	0.99
53066283--53066346	7	9.0	7	80	17	62	78	0	21	0	0.76
53066258--53066349	35	2.6	35	80	14	100	73	2	22	1	1.00
53067196--53067309	37	2.9	40	72	10	108	27	14	21	36	1.92
53070666--53070700	17	2.1	17	100	0	70	65	0	5	28	1.15
53071383--53071459	16	4.5	16	69	23	50	68	6	2	22	1.25
53072229--53072281	26	2.0	26	85	0	70	32	16	26	24	1.97
53081953--53082153	46	4.3	46	70	18	137	25	27	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53091817--53091869	26	1.9	29	88	11	85	35	0	0	64	0.94
53093415--53093601	71	2.7	68	93	5	281	18	28	18	34	1.95
53093438--53093601	71	2.3	71	100	0	328	18	28	17	35	1.94
53093438--53093635	71	2.8	70	92	3	276	20	28	17	33	1.95
53096632--53096765	43	2.9	45	81	8	155	23	18	29	28	1.98
53097621--53097678	24	2.4	24	82	5	64	56	1	1	39	1.19
53097708--53097740	17	1.9	17	93	0	57	51	3	0	45	1.16
53100269--53100398	65	2.0	65	100	0	260	27	6	16	49	1.70
53106612--53106645	15	2.3	15	89	0	50	26	0	8	64	1.22
53111044--53111214	46	3.7	46	76	6	157	29	19	29	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335