genome.fa.s5.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  178  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53449825--53450041	79	2.7	79	83	10	266	25	21	27	25	1.99
53457927--53458110	78	2.3	82	85	9	256	24	21	27	26	1.99
53457927--53458110	40	4.7	40	88	6	252	24	21	27	26	1.99
53462081--53462268	42	4.4	43	71	9	152	32	24	17	26	1.96
53462163--53462281	42	2.8	43	80	6	152	36	24	12	26	1.91
53462081--53462281	86	2.3	86	87	4	273	33	23	15	26	1.95
53462152--53462281	44	3.0	44	77	7	149	34	23	14	27	1.94
53462705--53462747	20	2.2	19	83	4	50	34	18	6	39	1.78
53465663--53465856	39	4.9	39	91	1	298	23	20	31	24	1.98
53473137--53473311	40	4.4	40	82	7	216	24	22	26	26	2.00
53473137--53473311	79	2.2	79	87	6	248	24	22	26	26	2.00
53481977--53482155	40	4.4	40	79	3	180	26	24	25	23	2.00
53481977--53482169	80	2.4	80	81	2	208	26	24	25	22	2.00
53482011--53482195	80	2.3	80	78	4	178	29	24	23	22	1.99
53484399--53484575	40	4.4	40	82	4	180	24	22	27	25	2.00
53484399--53484575	80	2.2	80	86	5	234	24	22	27	25	2.00
53484803--53484844	22	1.9	22	85	9	59	33	9	14	42	1.78
53487297--53487329	16	2.1	16	100	0	66	48	21	12	18	1.80
53488579--53488664	45	1.9	44	85	2	118	24	13	25	36	1.93
53499830--53499997	40	4.2	40	85	5	198	26	27	22	23	1.99
53499830--53499997	80	2.1	80	86	4	232	26	27	22	23	1.99
53505549--53505670	37	3.3	37	97	0	226	21	33	19	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53505770--53506032	49	5.4	49	96	0	447	29	33	9	28	1.88
53509332--53509609	29	9.7	29	98	0	515	23	32	16	27	1.96
53511698--53511819	37	3.3	37	97	0	226	21	33	19	25	1.97
53511921--53512184	49	5.4	49	96	0	456	29	33	9	28	1.88
53514775--53514822	25	1.9	25	86	0	69	33	20	16	29	1.95
53514870--53514945	11	7.5	11	71	16	74	35	13	19	31	1.90
53514869--53514945	20	3.8	20	94	0	136	35	12	19	32	1.90
53514995--53515117	52	2.4	49	86	8	158	26	22	23	26	2.00
53514995--53515092	26	3.8	26	84	1	135	25	23	23	27	2.00
53521135--53521282	75	2.0	74	85	5	201	33	5	5	56	1.45
53526601--53526739	27	5.1	27	82	6	138	27	23	9	40	1.85
53526610--53526739	54	2.4	54	88	5	183	27	24	7	40	1.82
53526771--53526948	27	6.6	27	80	7	191	40	22	8	28	1.83
53526738--53526921	54	3.4	54	81	4	176	40	21	9	28	1.85
53526768--53526949	81	2.2	82	85	5	255	40	21	8	29	1.84
53526982--53527042	27	2.3	27	80	5	70	36	18	24	21	1.95
53527856--53527925	25	2.8	25	95	0	122	24	27	24	24	2.00
53529021--53529152	68	1.9	68	96	0	246	30	27	13	28	1.94
53529100--53529220	42	2.9	41	82	6	161	28	26	16	28	1.97
53535502--53535807	54	5.7	54	84	2	321	32	10	19	37	1.86
53535529--53535807	107	2.6	108	80	2	301	31	9	20	37	1.85
53535502--53535811	27	11.5	27	80	4	277	31	10	20	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53535789--53535832	21	2.1	21	86	0	61	27	13	29	29	1.94
53542403--53542464	27	2.3	27	88	5	90	35	12	11	40	1.80
53542418--53542721	27	11.3	27	79	6	298	30	10	19	39	1.85
53542418--53542720	107	2.8	107	79	6	328	30	10	18	39	1.85
53542702--53542741	21	1.9	21	94	0	71	30	17	25	27	1.97
53543064--53543155	28	3.3	28	81	0	112	26	33	16	23	1.95
53544926--53545100	46	3.8	46	81	4	217	27	29	21	21	1.98
53544934--53545105	93	1.8	93	93	0	299	26	30	22	20	1.98
53544931--53545120	46	4.1	44	71	18	118	27	28	21	21	1.99
53550059--53550225	39	4.3	39	92	0	280	20	28	20	29	1.98
53559663--53559808	40	3.7	40	84	0	175	24	27	21	26	2.00
53559695--53559846	40	3.8	40	84	5	164	23	25	22	28	1.99
53564840--53565023	40	4.6	39	75	6	138	26	23	27	22	2.00
53564880--53565068	80	2.4	81	77	4	186	23	24	29	22	1.99
53571811--53571879	27	2.5	28	90	2	104	28	28	14	27	1.95
53573216--53573253	20	2.1	18	85	14	51	10	15	0	73	1.09
53578922--53578959	16	2.4	16	100	0	76	47	18	23	10	1.79
53579175--53579272	28	3.5	28	81	2	99	28	14	27	29	1.95
53579190--53579296	56	1.9	57	82	5	137	28	15	28	27	1.96
53587835--53587878	20	2.2	20	87	0	61	43	18	2	36	1.63
53587841--53587886	20	2.3	20	84	0	56	45	15	4	34	1.66
53591875--53592078	101	2.0	100	86	4	286	27	23	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53591879--53592093	100	2.1	101	84	5	276	27	22	16	32	1.96
53592654--53592693	21	2.0	20	90	5	62	42	22	0	35	1.54
53594435--53594694	27	9.6	27	80	3	281	29	22	8	40	1.82
53594435--53594694	54	4.8	54	83	2	326	29	22	8	40	1.82
53594435--53594685	81	3.1	80	86	3	351	29	22	7	40	1.82
53594682--53594911	27	8.5	27	85	1	300	36	20	18	25	1.95
53594909--53594972	27	2.4	27	74	10	67	17	18	26	37	1.93
53595132--53595210	27	3.0	26	83	5	95	20	20	21	37	1.94
53595298--53595356	22	2.7	22	81	0	64	20	25	22	32	1.98
53595523--53595594	27	2.7	25	83	10	81	18	25	20	36	1.95
53595712--53595874	6	26.8	6	73	16	131	20	15	14	49	1.79
53595712--53595874	85	1.9	85	94	0	290	20	15	14	49	1.79
53595718--53595895	85	2.1	85	88	2	259	20	16	14	49	1.79
53602174--53602260	25	3.5	25	73	9	88	27	22	16	33	1.95
53602241--53602303	25	2.5	25	80	10	83	25	20	22	31	1.98
53605514--53605540	4	6.8	4	100	0	54	25	0	0	74	0.83
53606494--53606551	28	2.0	29	87	9	84	27	13	29	29	1.94
53609745--53609774	16	1.9	16	93	6	53	30	0	20	50	1.49
53611560--53611622	26	2.3	27	78	8	74	36	23	11	28	1.89
53611726--53611837	27	4.1	27	83	3	127	20	22	20	36	1.95
53611727--53611833	54	2.0	54	85	3	144	21	21	19	37	1.95
53612294--53612418	60	2.1	60	100	0	250	27	12	21	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53616811--53616870	27	2.3	26	82	2	66	36	20	21	21	1.95
53616867--53616898	2	16.0	2	100	0	64	50	0	0	50	1.00
53621698--53621814	56	2.1	56	95	0	207	30	7	33	28	1.85
53622983--53623051	33	2.1	33	100	0	138	42	20	5	31	1.76
53623280--53623355	37	2.1	37	100	0	152	28	21	14	35	1.92
53624564--53624792	49	4.6	48	78	6	235	31	26	16	25	1.97
53625044--53625097	27	2.0	27	88	0	81	38	12	7	40	1.72
53636427--53636709	50	5.6	50	82	3	300	24	15	26	32	1.96
53636582--53636661	25	3.2	26	66	20	69	25	12	28	33	1.92
53636480--53636709	101	2.3	100	86	0	316	24	16	27	31	1.96
53636429--53636710	151	1.9	153	87	3	417	24	15	26	32	1.96
53645618--53645678	32	1.9	32	86	6	88	42	24	16	16	1.88
53655771--53655930	29	5.6	29	86	1	178	26	15	32	25	1.95
53655771--53655930	57	2.8	57	82	1	185	26	15	32	25	1.95
53662719--53662840	29	4.2	29	91	1	174	30	15	28	25	1.96
53670574--53670647	29	2.6	29	95	0	139	27	31	14	27	1.95
53670516--53670647	58	2.3	58	80	3	133	25	32	17	25	1.97
53678349--53678449	28	3.5	29	86	6	125	29	27	13	28	1.95
53686039--53686125	33	2.6	33	76	16	90	31	21	21	25	1.98
53689055--53689079	12	2.1	12	100	0	50	16	8	16	60	1.58
53689796--53690150	47	7.6	45	74	12	288	27	19	29	23	1.98
53689799--53690157	94	3.8	92	80	10	390	28	19	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53689796--53690159	141	2.6	141	76	11	372	28	19	29	22	1.98
53690975--53691064	44	2.0	44	97	0	171	26	18	32	22	1.97
53701872--53701961	42	2.1	43	83	6	112	28	23	20	27	1.99
53702555--53702651	48	2.0	48	92	4	160	30	27	8	32	1.86
53713458--53713560	29	3.6	28	81	5	116	21	16	33	29	1.95
53721257--53721359	29	3.6	28	81	5	116	21	16	33	29	1.95
53722890--53722976	27	3.2	27	85	0	111	20	13	20	44	1.85
53733465--53733652	40	4.7	40	85	1	243	25	28	21	25	1.99
53733445--53733656	80	2.7	78	84	7	275	26	27	20	25	1.99
53742752--53742776	9	2.8	9	100	0	50	60	24	0	16	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335