Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  95  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30521987--30522168
3
60.7
3
72
13
83
28
5
2
63
1.31
30522566--30522623
26
2.1
28
81
9
66
24
10
6
58
1.55
30528599--30529255
88
7.5
88
86
1
890
32
21
24
21
1.98
30528951--30529187
44
5.4
44
65
13
137
33
22
21
22
1.97
30528851--30529251
44
9.1
44
61
21
135
33
21
24
20
1.97
30529516--30529596
13
6.0
13
77
18
85
38
50
1
9
1.44
30529518--30529611
30
3.3
30
76
19
110
35
52
1
11
1.45
30529994--30530033
3
13.3
3
94
0
71
67
2
0
30
1.04
30530032--30530086
3
18.3
3
100
0
110
32
0
0
67
0.91
30530450--30530509
26
2.4
25
76
18
63
31
11
1
55
1.46
30530602--30530659
26
2.1
28
81
9
66
24
10
6
58
1.55
30532449--30532494
19
2.4
19
85
7
58
19
21
15
43
1.87
30536663--30537294
88
7.2
88
87
1
892
32
20
24
21
1.97
30536684--30537273
44
13.5
43
63
17
207
32
21
24
21
1.98
30537555--30537635
13
6.0
13
74
18
76
39
49
1
9
1.44
30537557--30537650
30
3.3
30
73
19
101
36
51
1
11
1.46
30538029--30538065
3
12.3
3
94
0
65
67
2
0
29
1.04
30538064--30538111
3
16.3
3
86
4
71
29
0
4
66
1.10
30538399--30538425
3
9.0
3
100
0
54
33
0
0
66
0.92
30538420--30538458
20
1.9
21
84
5
53
17
5
2
74
1.12
30543950--30543990
20
2.0
22
85
9
59
56
4
2
36
1.34
30545016--30545064
20
2.5
20
83
6
55
57
4
4
34
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30545752--30545803
26
2.0
26
100
0
104
26
11
19
42
1.85
30546005--30546088
35
2.3
37
79
8
91
50
1
2
46
1.22
30546098--30546159
15
4.1
14
78
14
52
75
4
12
6
1.15
30546098--30546159
30
2.0
31
84
3
81
75
4
12
6
1.15
30546595--30546642
20
2.4
20
100
0
96
56
0
8
35
1.30
30546905--30546955
2
25.0
2
96
4
93
49
0
1
49
1.12
30549982--30550024
20
2.2
20
100
0
86
23
13
16
46
1.83
30553096--30553148
26
2.0
27
85
7
74
24
15
22
37
1.92
30556115--30556193
25
3.1
25
74
15
63
72
2
21
3
1.13
30556115--30556203
30
2.9
30
76
15
85
70
2
23
3
1.13
30557419--30557530
27
4.1
27
82
10
131
36
23
24
16
1.94
30557419--30557533
54
2.1
54
87
3
160
36
23
24
15
1.94
30564044--30564111
20
2.9
24
81
14
72
67
8
0
23
1.18
30575539--30575583
19
2.3
20
92
3
74
62
4
0
33
1.15
30575540--30575585
20
2.2
20
85
11
58
65
4
0
30
1.12
30575714--30575770
21
2.7
21
81
8
62
57
5
0
36
1.21
30575502--30575929
184
2.3
188
89
4
670
45
8
7
38
1.64
30576331--30576403
36
2.0
36
100
0
146
32
13
21
31
1.93
30577641--30577791
40
3.7
40
84
5
196
23
15
26
34
1.94
30586321--30586388
27
2.6
27
76
6
68
22
19
27
30
1.97
30587933--30587962
10
2.8
11
90
10
53
16
6
0
76
0.99
30588387--30588421
18
1.9
18
88
0
52
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30589690--30589735
21
2.1
21
88
8
65
43
0
0
56
0.99
30589853--30589917
30
2.2
30
88
2
105
60
13
1
24
1.43
30601066--30601099
2
17.0
2
93
0
59
50
2
0
47
1.16
30607317--30607415
33
3.0
32
78
7
101
26
13
43
17
1.85
30609482--30609513
16
2.1
16
94
5
57
56
6
0
37
1.25
30609503--30609905
113
3.8
105
79
12
436
52
16
1
30
1.52
30612423--30612472
24
2.1
24
92
0
82
30
6
42
22
1.77
30613902--30614013
27
4.2
26
83
7
134
16
23
23
37
1.93
30613902--30614013
54
2.1
54
88
3
163
16
23
23
37
1.93
30630849--30630917
21
3.4
21
69
15
63
33
8
18
39
1.82
30630809--30630917
40
2.8
40
81
6
123
33
8
18
39
1.80
30631090--30631244
45
3.2
51
75
16
150
23
20
16
40
1.91
30633688--30633761
34
2.2
34
90
0
112
31
21
20
27
1.98
30637957--30638086
60
2.2
60
84
8
167
26
25
19
28
1.99
30637957--30638050
28
3.2
27
70
21
73
26
27
19
26
1.99
30638803--30639114
46
7.0
46
86
7
394
22
23
15
39
1.91
30639027--30639102
38
2.0
38
100
0
152
21
26
18
34
1.96
30641250--30641301
11
4.7
11
76
9
52
63
3
0
32
1.12
30644142--30644451
46
7.0
46
87
8
426
22
23
14
39
1.91
30644142--30644451
136
2.3
129
87
4
413
22
23
14
39
1.91
30644364--30644439
38
2.0
38
100
0
152
21
26
18
34
1.96
30646588--30646639
11
4.7
11
76
9
52
63
3
0
32
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30647604--30647634
8
3.9
8
91
0
53
3
22
25
48
1.66
30648401--30648441
14
2.9
14
89
7
57
75
2
19
2
1.03
30648420--30648463
10
4.2
10
82
8
52
81
0
13
4
0.83
30648422--30648464
21
2.0
22
86
4
61
79
0
13
6
0.93
30649907--30649987
28
2.9
28
92
1
126
32
18
24
24
1.97
30649915--30649997
28
3.0
27
87
3
103
32
20
24
22
1.98
30650103--30650167
28
2.3
28
91
0
103
32
7
27
32
1.85
30652577--30652603
3
9.0
3
100
0
54
66
0
0
33
0.92
30654150--30654199
25
2.0
25
88
0
73
36
28
2
34
1.69
30655892--30655952
30
2.0
30
90
0
95
34
9
24
31
1.88
30656372--30656548
47
3.8
47
77
13
195
22
19
27
30
1.98
30670824--30670853
11
2.7
11
94
0
51
63
0
0
36
0.95
30671812--30671849
16
2.4
16
82
13
51
60
5
0
34
1.19
30672168--30672208
21
1.9
21
90
5
64
17
4
2
75
1.08
30672594--30672639
23
2.0
24
83
12
60
36
2
8
52
1.45
30674803--30674858
6
9.8
6
77
11
55
62
0
0
37
0.95
30681923--30681973
11
4.8
10
83
11
50
9
7
5
76
1.15
30689536--30689565
16
1.9
15
93
6
51
60
6
0
33
1.23
30689747--30689787
21
2.0
21
85
9
57
56
0
4
39
1.21
30690057--30690095
20
2.0
20
89
0
60
61
10
0
28
1.28
30690871--30690919
13
3.6
13
79
17
55
83
2
6
8
0.87
30690875--30690912
11
3.8
10
83
10
51
86
0
2
10
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30691965--30692033
32
2.2
31
82
10
79
49
10
0
40
1.37
30695342--30695410
33
2.1
33
88
0
102
18
17
34
28
1.94
30696445--30696490
23
2.0
23
84
12
60
45
10
6
36
1.65
30696452--30696496
23
2.0
23
82
8
56
40
13
8
37
1.76
30699803--30699890
42
2.1
42
97
0
167
50
3
12
34
1.57
30699944--30699980
2
18.5
2
94
0
65
54
0
45
0
1.00
30700262--30700357
47
2.0
47
97
0
183
29
20
23
26
1.99
30702389--30702426
2
19.5
2
94
5
69
47
0
0
52
1.00
30702892--30703015
39
3.2
39
88
0
185
22
19
29
28
1.98
30704899--30704959
28
2.2
28
96
0
113
54
8
8
29
1.59
30712302--30712342
21
2.0
21
85
0
55
39
9
4
46
1.58
30712533--30712566
2
17.0
2
100
0
68
50
0
0
50
1.00
30714887--30714912
6
4.3
6
100
0
52
15
0
30
53
1.42
30720703--30720764
2
31.0
2
100
0
124
50
0
0
50
1.00
30723236--30723267
14
2.1
16
88
11
50
25
34
21
18
1.96
30735962--30735995
2
17.0
2
100
0
68
50
0
0
50
1.00
30736796--30736835
21
1.9
21
85
10
55
47
0
2
50
1.14
30737415--30737470
25
2.4
23
80
14
62
37
3
5
53
1.41
30738853--30738886
11
3.1
11
86
0
50
14
8
11
64
1.49
30747080--30747141
24
2.6
24
94
0
106
35
1
38
24
1.65
30748114--30748144
16
2.0
15
93
6
53
51
19
19
9
1.74
30748560--30748654
28
3.4
28
78
5
95
17
24
22
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30748560--30748672
27
4.2
26
78
8
109
16
23
22
37
1.94
30751994--30752143
40
3.7
40
83
6
169
29
17
24
29
1.97
30753873--30753927
19
2.8
20
78
15
62
40
12
12
34
1.82
30772239--30772412
46
3.8
45
81
6
181
23
29
18
28
1.98
30776508--30776545
19
2.0
19
94
0
67
39
15
15
28
1.89
30782296--30782337
22
1.9
22
90
9
68
35
0
4
59
1.19
30787339--30787368
7
4.4
7
91
8
53
86
0
0
13
0.57
30787339--30787368
13
2.2
14
94
5
53
86
0
0
13
0.57
30790661--30790695
10
3.5
10
100
0
70
28
0
0
71
0.86
30790660--30790704
20
2.2
21
84
11
67
24
0
6
68
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335