genome.fa.s5.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  214  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63811453--63811633	96	1.9	96	85	0	254	35	11	14	38	1.82
63813551--63813606	26	2.2	26	84	12	71	23	14	12	50	1.77
63816004--63816039	19	1.9	18	94	5	63	72	0	22	5	1.05
63818052--63818363	50	6.2	50	92	1	500	42	19	11	25	1.86
63820677--63820988	50	6.2	50	92	1	500	42	19	11	25	1.86
63834406--63834507	28	3.5	27	71	19	80	24	28	20	26	1.99
63834407--63834543	60	2.3	59	83	8	161	25	24	21	28	1.99
63837273--63837323	3	17.0	3	100	0	102	66	0	0	33	0.92
63843194--63843318	57	2.2	56	85	4	162	30	16	25	28	1.96
63843194--63843327	28	4.8	28	71	7	101	30	17	24	27	1.97
63847423--63847447	12	2.1	12	100	0	50	44	32	0	24	1.54
63851227--63851361	40	3.3	39	84	6	171	34	27	14	23	1.93
63858905--63859089	79	2.3	82	83	7	229	24	24	27	23	2.00
63858906--63859097	40	4.8	40	79	7	151	24	24	28	22	2.00
63858905--63859122	79	2.7	79	79	6	183	24	23	27	24	2.00
63864374--63864523	40	3.8	39	78	5	140	25	22	28	23	1.99
63864425--63864562	39	3.5	40	83	3	147	25	23	28	22	1.99
63864374--63864555	79	2.3	80	82	8	212	24	23	28	23	2.00
63867305--63867352	20	2.4	20	96	0	87	37	4	4	54	1.39
63867683--63867743	11	6.4	9	78	17	54	68	0	0	31	0.89
63867925--63868046	9	13.2	9	69	14	61	33	4	0	61	1.21
63869533--63869596	30	2.1	31	85	2	85	60	10	4	23	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63869627--63869669	22	2.0	22	85	0	59	58	11	11	18	1.63
63869634--63869674	11	3.7	11	80	0	55	56	9	14	19	1.66
63870377--63870511	64	2.1	65	84	6	177	33	14	5	45	1.69
63875024--63875064	19	2.2	19	90	0	64	43	19	31	4	1.72
63875116--63875250	64	2.1	65	86	4	184	44	5	14	34	1.70
63875997--63876077	42	1.9	42	84	0	108	62	1	3	32	1.20
63877606--63877708	29	3.6	28	76	5	98	28	34	17	19	1.94
63882836--63882950	58	2.0	57	84	5	151	31	17	20	30	1.96
63882836--63882969	58	2.3	58	78	6	130	31	16	23	29	1.96
63884600--63884672	36	2.0	36	97	0	137	20	5	19	54	1.63
63886389--63886537	80	1.9	80	81	2	183	22	30	24	22	1.99
63886430--63886537	40	2.7	38	85	8	128	21	29	25	23	1.99
63895605--63895674	27	2.5	28	95	2	124	28	14	27	30	1.95
63895605--63895686	27	3.0	27	85	8	78	29	15	24	30	1.96
63903307--63903376	27	2.5	28	95	2	124	28	14	27	30	1.95
63903307--63903388	27	3.0	27	85	8	78	29	15	24	30	1.96
63908581--63908621	22	1.9	22	90	5	66	12	43	26	17	1.84
63913932--63914243	45	6.7	46	75	11	197	27	18	29	24	1.98
63914071--63914198	49	2.6	49	83	3	159	26	19	32	21	1.97
63917908--63918118	115	1.8	115	80	4	255	27	24	24	23	2.00
63919042--63919105	3	21.7	3	81	9	78	32	0	0	67	0.91
63919100--63919155	21	2.5	23	74	11	62	17	7	7	67	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63919227--63919256	15	2.0	15	93	0	51	16	6	10	66	1.41
63933602--63933704	37	2.8	37	84	8	113	28	16	27	28	1.97
63933666--63933942	48	5.8	48	92	0	455	26	19	25	29	1.98
63933895--63933987	42	2.2	42	83	7	109	30	16	24	29	1.96
63934000--63934038	18	2.2	18	95	0	69	23	30	17	28	1.97
63938732--63938853	47	2.6	44	79	12	129	29	17	30	22	1.97
63938768--63939092	49	6.8	47	71	12	166	29	18	26	24	1.98
63938814--63939092	49	5.8	49	74	9	193	29	19	26	25	1.98
63938777--63939091	142	2.2	140	82	9	363	29	19	26	25	1.98
63941917--63941992	37	2.1	37	100	0	152	38	13	15	32	1.86
63944675--63944736	18	3.4	18	71	20	56	20	1	4	72	1.12
63944677--63944708	12	2.8	11	90	9	55	15	0	3	81	0.82
63944695--63944756	25	2.4	26	86	7	83	25	3	1	69	1.13
63946375--63946497	51	2.4	51	83	4	140	27	14	29	28	1.95
63948898--63949131	27	8.7	27	82	6	224	39	21	7	31	1.82
63948898--63949130	54	4.3	54	84	5	274	39	21	7	30	1.82
63948898--63949130	81	2.9	82	82	4	249	39	21	7	30	1.82
63948898--63949130	108	2.2	108	85	3	308	39	21	7	30	1.82
63948898--63949184	27	10.7	27	80	5	188	38	22	7	31	1.82
63949168--63949293	27	4.7	27	85	0	180	35	20	18	25	1.95
63949166--63949309	27	5.3	27	81	3	137	36	20	17	25	1.94
63949700--63949761	22	2.9	21	80	7	70	20	25	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63950145--63950207	25	2.5	25	81	0	72	22	19	12	46	1.83
63950168--63950225	18	3.2	18	82	7	64	17	18	15	48	1.82
63950168--63950255	43	2.0	43	84	0	113	15	20	13	50	1.78
63950190--63950225	6	6.0	6	93	0	63	16	13	16	52	1.74
63959437--63959495	21	2.9	20	78	9	66	40	28	13	16	1.87
63963159--63963222	31	2.1	31	87	0	92	26	21	15	35	1.94
63963435--63963557	24	5.2	23	83	3	111	28	19	20	31	1.97
63963437--63963556	23	5.1	23	86	3	150	29	19	20	30	1.97
63963437--63963558	47	2.6	47	88	0	181	28	18	20	31	1.97
63963607--63963673	20	3.3	20	89	0	107	31	20	13	34	1.92
63963710--63963757	25	1.9	25	91	0	78	25	14	25	35	1.94
63966772--63967316	39	14.0	39	91	0	856	22	24	28	24	1.99
63970317--63970355	19	2.2	19	86	9	55	43	7	0	48	1.31
63972332--63972395	31	2.1	31	84	0	83	26	21	14	37	1.92
63972603--63972754	24	6.4	24	89	3	218	26	23	20	29	1.99
63972603--63972754	71	2.1	71	91	1	241	26	23	20	29	1.99
63972603--63972754	47	3.2	48	89	3	227	26	23	20	29	1.99
63972804--63972870	20	3.3	20	93	0	116	32	20	11	34	1.90
63972804--63972859	11	5.5	11	71	16	57	32	19	12	35	1.89
63972907--63972954	25	1.9	25	91	0	78	25	14	25	35	1.94
63976433--63976550	41	3.1	41	60	28	98	32	17	28	21	1.96
63976401--63976564	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63981154--63981223	33	2.1	33	94	0	122	25	28	12	32	1.93
63983654--63983728	15	5.0	15	83	0	87	56	14	16	13	1.69
63988519--63988703	79	2.3	81	82	7	218	24	27	23	24	2.00
63988519--63988703	40	4.6	40	74	11	146	24	27	23	24	2.00
63991948--63992244	40	7.5	39	90	2	364	22	25	28	23	1.99
63991948--63992209	40	6.6	40	93	1	393	22	25	28	24	1.99
63991948--63992209	79	3.3	79	90	1	391	22	25	28	24	1.99
63999683--63999887	39	5.2	40	86	6	260	23	21	28	25	1.99
63999683--63999887	79	2.6	77	85	6	270	23	21	28	25	1.99
64007920--64008107	40	4.7	40	91	1	261	23	22	29	24	1.99
64007916--64008127	80	2.7	80	84	5	286	24	21	27	25	1.99
64008341--64008390	24	2.1	24	100	0	100	38	0	20	42	1.52
64011761--64012017	40	6.6	40	91	4	366	21	25	29	23	1.99
64011761--64012052	158	1.9	154	84	4	397	22	25	29	22	1.99
64020209--64020339	29	4.6	29	90	1	192	25	15	32	26	1.95
64020209--64020339	57	2.3	58	89	1	201	25	15	32	26	1.95
64020209--64020368	57	2.8	57	83	5	173	25	16	32	25	1.96
64027667--64027827	29	5.6	29	87	1	207	25	16	32	26	1.96
64036828--64036873	23	2.0	23	100	0	92	30	0	17	52	1.45
64039853--64039895	17	2.4	18	80	3	52	39	4	9	46	1.57
64045903--64046036	43	2.9	45	83	7	164	22	16	31	29	1.96
64047376--64047445	20	3.5	20	96	0	131	24	32	31	11	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64051349--64051381	13	2.6	13	90	4	50	39	0	12	48	1.40
64051901--64051944	19	2.4	19	85	7	56	50	0	9	40	1.34
64056906--64056949	19	2.4	19	85	7	56	50	0	9	40	1.34
64059372--64059428	26	2.2	26	80	3	60	36	17	17	28	1.93
64067324--64067369	16	2.8	17	81	15	53	8	8	0	82	0.84
64067334--64067406	11	6.2	11	71	22	51	16	5	1	76	1.04
64067328--64067406	24	3.2	25	76	5	79	16	5	1	77	1.01
64067343--64067396	17	3.1	17	78	5	54	16	5	1	75	1.07
64070154--64070325	93	1.8	93	96	0	317	27	30	22	20	1.98
64070146--64070321	46	3.8	46	81	10	232	28	29	21	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335