genome.fa.s5.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  183  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55079761--55079805	20	2.2	21	88	4	65	42	22	2	33	1.66
55087658--55088757	547	2.0	550	92	1	1848	32	17	19	30	1.95
55093449--55093605	56	2.8	54	82	3	170	29	33	18	18	1.95
55097928--55097966	17	2.3	17	81	0	51	38	2	2	56	1.27
55097981--55098033	20	2.8	19	81	18	67	43	0	1	54	1.11
55098009--55098125	62	1.9	59	86	5	162	40	4	5	50	1.44
55103061--55103167	39	2.7	39	86	2	151	26	20	28	24	1.99
55103067--55103205	40	3.5	40	88	2	183	23	21	30	24	1.99
55103066--55103231	79	2.1	79	80	6	185	24	21	28	25	1.99
55109564--55109673	54	2.0	54	96	0	202	29	15	26	29	1.96
55111579--55111935	166	2.2	166	91	0	570	21	22	32	23	1.98
55112558--55112600	14	2.8	16	79	13	54	46	0	6	46	1.30
55114449--55114647	68	3.0	66	75	18	198	41	3	4	50	1.40
55114519--55114635	62	1.9	62	87	5	177	41	3	4	50	1.38
55115693--55115856	82	2.0	82	95	0	292	36	9	17	37	1.81
55120331--55120414	20	4.2	20	78	13	84	69	1	2	27	1.09
55120426--55120509	30	3.0	27	77	13	80	60	0	7	32	1.24
55120722--55120805	19	4.4	19	79	11	100	28	1	3	66	1.15
55120734--55120813	10	8.2	10	79	10	85	28	1	2	67	1.11
55120733--55120861	29	4.5	29	79	11	149	34	0	1	62	1.10
55120734--55120813	39	2.1	39	88	4	117	28	1	2	67	1.11
55120722--55120871	58	2.6	57	81	12	166	34	2	2	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55120734--55120872	9	14.7	9	71	12	91	34	1	1	62	1.13
55120733--55120873	28	4.9	28	75	13	126	34	1	1	62	1.13
55121899--55122422	268	2.0	268	94	0	913	29	13	23	33	1.92
55122703--55122731	14	2.0	15	93	6	51	27	0	20	51	1.47
55127696--55127763	33	2.1	33	88	0	100	20	14	30	33	1.93
55131347--55131407	31	2.0	31	90	6	97	26	31	19	22	1.98
55131503--55131629	35	3.6	35	88	2	175	32	25	12	29	1.93
55145730--55145767	2	19.5	2	94	5	69	50	0	0	50	1.00
55149571--55149608	20	1.9	20	88	0	58	23	18	26	31	1.97
55156282--55156390	52	2.1	52	94	1	193	48	8	22	20	1.76
55159176--55159224	24	2.0	24	100	0	98	32	20	4	42	1.71
55162265--55162371	42	2.5	42	96	0	196	28	14	33	22	1.94
55162379--55162448	27	2.5	28	86	2	97	27	14	25	32	1.94
55170232--55170338	42	2.5	42	96	0	196	28	14	33	22	1.94
55170346--55170415	27	2.5	28	86	2	97	27	14	25	32	1.94
55171829--55172517	343	2.0	343	97	0	1299	37	16	17	27	1.92
55179660--55179703	17	2.5	17	81	3	61	54	0	4	40	1.21
55179768--55179810	17	2.6	18	82	10	56	37	0	4	58	1.19
55183469--55183546	30	2.7	29	79	16	83	52	2	2	42	1.28
55183514--55183577	19	3.3	19	78	12	67	59	0	3	37	1.13
55183522--55183591	21	3.4	21	79	11	74	60	0	5	34	1.21
55183655--55183697	19	2.2	20	87	4	61	67	2	0	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55185195--55185241	16	2.9	17	75	12	53	38	21	4	36	1.73
55186617--55186663	5	10.0	5	82	13	64	59	2	0	38	1.09
55186618--55186660	13	3.2	13	90	9	61	60	2	0	37	1.10
55188290--55188324	17	2.1	17	100	0	70	34	11	25	28	1.91
55189508--55189566	21	2.9	21	87	2	84	28	23	32	15	1.95
55189735--55189771	13	2.8	13	87	0	56	29	29	27	13	1.94
55190570--55190800	47	4.8	50	76	14	220	24	31	17	26	1.97
55192212--55192378	35	4.6	35	85	7	201	33	24	10	31	1.90
55192207--55192378	75	2.4	73	84	8	226	33	23	11	31	1.90
55199681--55199847	35	4.6	35	85	7	201	33	24	10	31	1.90
55199676--55199847	75	2.4	73	84	8	226	33	23	11	31	1.90
55202852--55202947	25	3.8	25	84	2	129	27	25	22	25	2.00
55202928--55202974	25	2.0	24	83	8	60	29	21	23	25	1.99
55203167--55203250	31	2.7	31	92	1	143	33	17	25	23	1.97
55210367--55210542	46	3.8	45	78	10	194	22	20	28	28	1.98
55210363--55210534	93	1.8	93	92	0	290	22	20	29	27	1.98
55213746--55213841	25	3.8	25	87	2	138	26	26	22	25	2.00
55214030--55214114	31	2.8	31	85	7	129	34	15	23	27	1.95
55214893--55214952	30	2.0	30	100	0	120	36	26	3	33	1.73
55220703--55220748	24	2.0	23	82	4	56	26	4	4	65	1.30
55241889--55242003	44	2.6	44	85	2	149	35	13	22	27	1.92
55241889--55242022	46	3.0	45	82	4	153	35	14	23	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55248827--55249128	55	5.7	53	72	11	201	23	24	17	35	1.95
55248828--55249136	54	5.9	54	75	9	242	23	24	17	34	1.95
55249014--55249183	47	3.5	47	72	10	169	27	23	14	35	1.93
55248851--55249184	101	3.2	101	85	5	413	24	24	16	34	1.95
55250555--55250776	67	3.4	63	75	10	205	23	28	15	31	1.96
55252346--55252478	45	2.9	47	79	6	146	23	25	18	32	1.97
55252481--55252565	44	1.9	44	85	4	118	24	24	14	36	1.93
55256357--55256573	40	5.5	40	91	2	332	25	27	22	23	2.00
55256357--55256573	79	2.7	80	90	2	332	25	27	22	23	2.00
55264332--55264509	40	4.5	40	94	2	297	23	28	24	23	1.99
55270079--55270125	24	2.0	24	87	4	69	46	36	6	10	1.64
55270613--55270868	46	5.6	46	91	0	377	21	23	13	42	1.88
55270843--55270958	45	2.6	45	84	2	153	20	25	16	37	1.93
55273620--55273679	23	2.7	23	71	16	56	63	3	0	33	1.11
55273614--55273689	31	2.4	31	80	6	82	59	6	1	32	1.32
55275139--55275327	55	3.5	53	84	5	236	20	24	19	34	1.96
55275323--55275403	37	2.2	37	93	0	135	29	24	12	33	1.92
55275565--55275648	44	1.9	44	85	4	116	25	23	13	38	1.91
55278313--55278485	46	3.7	46	76	10	190	22	20	27	30	1.98
55278310--55278480	93	1.8	93	91	0	279	22	20	28	29	1.98
55278710--55278747	19	2.0	20	85	15	53	36	0	23	39	1.55
55283768--55283989	40	5.6	40	92	1	358	27	26	22	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55292099--55292320	40	5.6	40	94	1	376	27	26	22	23	2.00
55296683--55296991	54	5.9	54	75	12	264	23	23	16	35	1.94
55296869--55297091	47	4.6	47	75	9	205	27	23	13	35	1.92
55296706--55297044	101	3.3	101	85	6	423	24	23	15	35	1.94
55310314--55310579	46	5.7	49	77	12	206	22	29	20	27	1.98
55310316--55310579	94	2.8	90	81	10	266	22	29	20	28	1.98
55314719--55314832	40	2.8	39	83	6	131	23	27	24	24	2.00
55314719--55314870	40	3.8	40	79	6	130	22	25	24	27	2.00
55318484--55318509	13	2.0	13	100	0	52	38	30	0	30	1.58
55330827--55331009	39	4.6	39	87	0	240	22	30	22	24	1.99
55338259--55338441	39	4.6	39	87	0	240	22	30	22	24	1.99
55342330--55342461	29	4.6	29	84	1	149	25	16	32	25	1.96
55350178--55350309	29	4.6	29	82	1	140	24	16	33	25	1.96
55355174--55355375	95	2.1	95	85	0	287	24	13	20	41	1.88
55359043--55359137	49	2.0	48	89	6	147	32	28	11	27	1.91
55359053--55359219	47	3.5	46	83	4	154	31	28	14	26	1.95
55359241--55359385	31	4.7	31	91	0	218	26	26	17	28	1.98
55359361--55359489	50	2.5	51	88	2	197	26	23	15	34	1.94
55366044--55366077	12	2.8	12	81	0	50	67	0	0	32	0.91
55367721--55367750	13	2.3	13	100	0	60	63	6	0	30	1.20
55368231--55368441	116	1.8	115	91	1	350	30	21	9	38	1.85
55368990--55369015	9	2.9	9	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55372212--55372398	96	1.9	96	92	2	313	25	27	18	28	1.98
55372215--55372398	48	3.8	48	84	5	246	25	27	18	29	1.98
55373433--55373560	32	4.0	32	91	0	211	45	9	10	35	1.70
55379111--55379286	46	3.8	46	79	12	207	29	29	20	20	1.98
55379119--55379289	93	1.8	93	93	0	297	28	29	21	20	1.98
55379706--55379765	30	2.0	30	83	0	75	28	23	8	40	1.83
55381774--55381813	20	2.1	19	95	4	71	22	12	5	60	1.52
55381890--55381933	5	8.8	5	89	0	70	45	0	15	38	1.47
55387469--55387557	29	2.8	31	80	19	112	41	21	14	22	1.89
55387727--55387798	35	2.1	35	91	0	117	23	23	18	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335