genome.fa.s5.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  188  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56563807--56563991	40	4.7	40	84	7	227	23	22	28	25	1.99
56563807--56563989	79	2.3	81	85	7	241	24	22	27	25	2.00
56563808--56564024	79	2.7	78	79	12	237	25	21	27	25	1.99
56569737--56569868	40	3.3	40	84	5	151	25	26	21	26	1.99
56569798--56569907	39	2.8	39	78	9	125	26	25	19	29	1.98
56575049--56575233	40	4.7	40	79	7	191	24	21	27	25	1.99
56575105--56575266	79	2.1	79	80	6	177	26	19	27	26	1.99
56577115--56577142	2	14.0	2	100	0	56	50	0	0	50	1.00
56577590--56577796	24	8.6	24	95	0	324	21	19	25	34	1.96
56584861--56584886	2	13.0	2	100	0	52	50	0	0	50	1.00
56585336--56585518	24	7.6	24	94	0	285	21	19	25	34	1.96
56585336--56585540	48	4.3	48	89	2	270	22	19	24	33	1.97
56585336--56585540	72	2.8	72	81	5	245	22	19	24	33	1.97
56588378--56588565	40	4.7	40	89	1	252	24	21	29	24	1.99
56588374--56588585	80	2.7	80	82	3	275	24	20	28	26	1.99
56588788--56588840	24	2.2	24	89	3	79	35	0	26	37	1.57
56588799--56588848	24	2.1	24	100	0	100	38	0	20	42	1.52
56592433--56592640	40	5.2	40	85	2	258	25	21	26	26	1.99
56599183--56599252	27	2.6	27	97	2	131	31	27	12	28	1.93
56607231--56607300	27	2.6	27	97	2	131	31	27	12	28	1.93
56607769--56607807	2	19.5	2	94	0	69	48	0	2	48	1.15
56610012--56610081	35	2.0	35	85	0	95	31	25	4	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56611186--56611290	27	3.9	27	78	2	86	40	16	14	29	1.87
56611283--56611335	27	2.0	27	88	0	79	22	20	22	33	1.97
56613511--56613546	17	2.1	18	89	5	56	41	5	5	47	1.50
56617316--56617391	27	2.9	26	82	5	82	38	18	13	30	1.89
56617421--56617522	27	3.8	27	75	2	98	34	19	19	26	1.96
56621242--56621373	27	5.0	26	75	6	113	32	16	22	28	1.96
56632435--56633187	49	15.4	49	92	0	1182	32	9	28	29	1.89
56632435--56633187	98	7.7	98	96	0	1308	32	9	28	29	1.89
56633256--56633342	37	2.3	37	88	5	131	21	18	32	27	1.97
56635205--56635504	40	7.6	40	84	5	288	23	21	28	26	1.99
56635322--56635504	79	2.3	79	91	3	305	24	21	28	25	1.99
56639344--56639932	49	12.4	49	88	6	845	32	9	29	29	1.88
56640001--56640087	37	2.3	36	94	5	147	20	19	33	26	1.97
56641958--56641982	13	1.9	13	100	0	50	44	8	8	40	1.63
56642738--56642904	40	4.2	40	80	5	196	24	22	27	25	2.00
56642738--56642904	79	2.1	80	84	4	214	24	22	27	25	2.00
56650807--56650973	40	4.2	41	80	5	182	25	22	27	25	2.00
56650807--56650973	80	2.1	80	83	5	205	25	22	27	25	2.00
56652559--56652726	40	4.2	40	82	1	185	24	26	22	26	2.00
56657961--56658040	27	3.0	27	78	5	90	21	21	17	40	1.92
56660174--56660271	46	2.1	45	83	3	115	25	17	28	28	1.97
56661591--56661745	43	3.6	43	78	5	161	27	17	22	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56677398--56677468	29	2.5	29	90	6	110	29	28	14	28	1.95
56685207--56685277	29	2.5	28	88	8	101	29	26	14	29	1.95
56689067--56689098	8	4.0	8	91	0	55	46	25	25	3	1.67
56689343--56689410	28	2.4	28	92	0	109	33	27	7	30	1.84
56689516--56689605	28	3.2	27	84	7	110	21	24	22	32	1.98
56696274--56696349	40	1.9	40	91	0	125	19	15	31	32	1.94
56696362--56696434	28	2.6	28	82	0	83	24	10	34	30	1.90
56698978--56699106	37	3.5	37	86	6	192	27	17	29	26	1.97
56699094--56699318	42	5.2	42	71	8	148	28	17	26	28	1.97
56703080--56703155	40	1.9	40	91	0	125	19	15	31	32	1.94
56703166--56703240	28	2.7	28	87	0	96	25	10	32	32	1.90
56703787--56703821	18	1.9	18	100	0	70	54	11	0	34	1.37
56716948--56717306	27	13.3	27	84	5	295	29	8	20	41	1.83
56716948--56717313	81	4.5	81	79	6	341	29	8	20	41	1.82
56717303--56717405	27	3.9	27	87	1	145	29	22	15	33	1.95
56717303--56717404	54	1.9	53	91	2	168	29	22	14	33	1.94
56729068--56729191	40	3.1	40	80	0	149	25	21	27	25	2.00
56730938--56730982	23	1.9	23	86	4	63	15	6	2	75	1.11
56734126--56734211	26	3.3	26	95	0	145	38	12	29	19	1.89
56735292--56735328	19	1.9	19	88	0	56	35	2	40	21	1.68
56735305--56735363	28	2.1	28	93	3	102	52	1	30	15	1.52
56735313--56735371	28	2.1	27	87	3	82	47	1	35	15	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56735279--56735434	80	2.0	77	86	5	213	45	1	32	21	1.60
56735500--56735561	28	2.2	28	91	0	97	54	1	27	16	1.51
56735935--56735993	16	3.7	16	86	0	73	40	6	27	25	1.80
56741428--56741452	11	2.3	11	100	0	50	28	0	0	72	0.86
56743897--56743924	12	2.3	12	100	0	56	25	42	25	7	1.80
56749632--56749656	12	2.1	12	100	0	50	16	8	16	60	1.58
56752339--56752395	25	2.3	26	79	11	66	59	19	19	1	1.46
56756527--56756583	25	2.3	26	79	11	66	59	19	19	1	1.46
56759237--56759339	33	3.1	33	95	0	188	30	16	10	42	1.82
56761679--56761757	31	2.5	31	95	0	140	27	27	16	27	1.97
56761781--56761872	42	2.2	42	92	0	148	34	21	14	29	1.93
56762020--56762089	25	2.8	25	89	4	97	22	24	27	25	2.00
56766664--56766841	40	4.5	39	88	4	216	25	21	28	24	1.99
56766664--56766841	80	2.2	80	87	4	243	25	21	28	24	1.99
56767078--56767127	24	2.1	24	100	0	100	38	0	20	42	1.52
56774936--56775143	40	5.2	40	86	4	260	23	21	28	25	1.99
56775346--56775398	24	2.2	24	89	3	79	35	0	26	37	1.57
56775357--56775406	24	2.1	24	100	0	100	38	0	20	42	1.52
56780063--56780170	37	2.9	37	87	0	162	26	31	17	24	1.97
56780303--56781132	48	17.2	48	93	1	1273	31	23	6	37	1.82
56784008--56784037	13	2.3	13	100	0	60	46	13	10	30	1.75
56786296--56786427	43	3.1	42	78	8	126	25	15	25	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56791654--56791721	28	2.4	28	95	0	118	33	26	7	32	1.84
56791827--56791927	28	3.6	27	81	7	114	20	25	22	30	1.98
56791827--56791927	27	3.6	28	81	6	116	20	25	22	30	1.98
56791827--56791941	55	2.1	56	82	8	137	19	24	22	33	1.97
56792380--56792418	19	2.1	19	85	0	51	15	5	7	71	1.26
56798540--56798671	29	4.6	29	92	0	210	25	31	15	27	1.95
56798511--56798671	58	2.8	58	86	0	178	25	32	15	26	1.95
56811825--56812040	40	5.4	40	89	1	281	26	22	26	24	2.00
56811825--56812040	80	2.7	80	87	0	315	26	22	26	24	2.00
56814290--56814360	28	2.5	28	79	4	90	32	26	11	29	1.91
56831017--56831190	42	4.1	42	79	5	185	29	28	16	25	1.96
56831036--56831191	84	1.9	84	85	5	217	29	28	16	25	1.97
56833019--56833109	37	2.4	38	87	3	114	24	28	23	24	1.99
56833029--56833109	37	2.2	37	90	0	126	25	30	22	20	1.98
56833268--56833384	48	2.4	48	88	0	180	29	26	8	35	1.86
56835801--56835921	48	2.5	48	89	2	181	30	23	15	30	1.95
56837315--56837481	52	3.2	52	78	10	169	26	16	25	31	1.96
56852166--56852366	52	4.0	52	77	12	186	23	16	28	30	1.97
56852173--56852376	46	4.1	47	76	13	178	23	16	29	30	1.96
56854187--56854336	40	3.8	40	74	14	123	26	24	27	22	1.99
56854231--56854377	79	1.9	79	81	2	179	22	23	30	23	1.99
56862299--56862482	40	4.6	39	75	6	138	26	23	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56862339--56862527	80	2.4	81	77	4	186	23	24	29	22	1.99
56866118--56866290	46	3.7	46	76	13	192	21	20	27	30	1.98
56866115--56866285	93	1.8	93	93	0	297	21	20	28	29	1.98
56871532--56871610	25	3.3	24	69	16	74	32	29	5	32	1.79
56871482--56871753	49	5.7	49	89	3	360	29	29	7	33	1.85
56876390--56876463	31	2.4	29	95	0	85	52	16	1	29	1.52
56876399--56876458	17	3.7	17	82	13	90	56	16	0	26	1.40
56876416--56876463	14	3.2	14	78	16	60	52	16	0	31	1.45
56876398--56876463	31	2.1	31	100	0	132	53	16	0	30	1.44
56887883--56887939	28	2.0	28	82	0	69	29	31	10	28	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335