genome.fa.s5.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  143  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42133396--42133490	31	3.1	31	98	0	181	23	22	15	38	1.92
42133682--42133824	24	6.0	24	91	4	209	26	22	22	28	1.99
42133682--42133823	47	3.0	48	90	5	207	26	22	22	28	1.99
42133681--42133824	71	2.0	72	89	4	220	26	22	22	29	1.99
42133875--42133934	20	3.0	20	90	0	102	33	20	11	35	1.88
42133977--42134024	25	1.9	25	86	0	69	25	16	25	33	1.96
42135179--42135242	26	2.4	27	84	2	85	18	23	20	37	1.94
42135179--42135252	27	2.8	26	81	4	85	17	20	22	39	1.92
42135296--42135351	27	2.1	26	83	9	69	39	12	10	37	1.78
42135304--42135442	27	5.0	27	71	14	95	30	8	20	40	1.83
42135421--42135741	27	11.9	27	88	3	414	39	9	23	27	1.86
42135692--42135943	27	9.4	26	82	8	186	31	8	21	38	1.84
42135737--42135948	81	2.6	82	83	5	236	30	8	21	39	1.83
42135791--42135948	27	5.9	27	90	2	230	31	7	20	40	1.80
42139283--42139352	35	2.0	35	97	0	131	47	14	2	35	1.59
42140144--42140280	68	2.0	68	92	0	229	18	35	21	24	1.95
42145399--42145463	29	2.2	30	86	8	89	18	24	12	44	1.84
42150961--42150994	18	1.9	18	88	5	52	64	5	2	26	1.30
42150964--42151005	20	2.1	20	82	8	50	69	9	4	16	1.33
42155585--42155648	21	3.1	21	81	2	67	39	20	12	28	1.89
42157411--42157540	40	3.2	40	82	4	165	23	24	28	23	2.00
42165253--42165382	40	3.2	40	82	4	165	23	24	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42170635--42170664	15	2.0	15	93	0	51	36	0	6	56	1.26
42175555--42175594	20	2.2	19	86	13	57	25	0	5	70	1.08
42180526--42180585	17	3.5	17	74	21	63	65	0	1	33	1.03
42184630--42184817	35	5.3	35	92	1	295	35	13	12	38	1.83
42185168--42185854	205	3.4	205	91	0	1104	30	20	18	31	1.96
42185847--42185930	44	1.9	44	92	0	141	25	28	17	28	1.98
42185845--42185939	44	2.2	44	86	0	136	23	28	17	30	1.97
42185870--42186458	44	13.4	44	72	10	400	27	24	17	30	1.97
42185883--42186458	132	4.4	132	91	0	886	26	24	17	30	1.97
42187348--42187418	18	3.7	19	83	9	74	8	7	0	84	0.78
42187358--42187418	12	5.4	12	78	21	62	8	6	0	85	0.75
42187351--42187418	20	3.6	18	80	7	64	7	7	0	85	0.75
42189412--42189494	28	2.9	28	94	1	139	31	20	26	21	1.98
42189599--42189661	28	2.2	28	94	0	108	30	6	28	34	1.82
42197296--42197386	28	3.2	28	87	10	132	32	23	23	20	1.98
42197491--42197555	28	2.3	28	97	0	121	30	7	27	33	1.85
42203911--42203962	23	2.3	22	81	12	61	38	7	15	38	1.76
42203919--42203964	23	2.0	23	88	12	69	39	6	10	43	1.66
42208979--42209044	21	3.1	21	69	4	53	43	18	10	27	1.82
42209739--42209765	14	1.9	14	100	0	54	85	0	0	14	0.61
42212952--42213083	48	2.8	48	85	2	167	33	28	17	21	1.96
42216013--42216064	26	2.0	26	100	0	104	42	15	23	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42224248--42224300	25	2.1	25	100	0	106	43	7	16	32	1.76
42225193--42225236	21	2.1	21	91	0	70	0	52	20	27	1.47
42229320--42229425	53	2.1	49	84	7	131	44	2	7	45	1.46
42230012--42230042	7	4.4	7	100	0	62	61	0	0	38	0.96
42231160--42231197	7	5.4	7	100	0	76	60	0	0	39	0.97
42232026--42232090	20	3.2	20	69	16	62	52	1	13	32	1.50
42234876--42234907	15	2.1	15	94	0	55	31	9	0	59	1.29
42235929--42236106	41	4.4	41	91	0	286	19	20	23	36	1.95
42238822--42238871	21	2.4	21	96	0	91	44	16	16	24	1.86
42252034--42252060	12	2.2	12	100	0	54	14	0	0	85	0.61
42252259--42252484	44	5.1	44	93	0	362	29	26	13	30	1.94
42252438--42252552	54	2.1	54	87	3	160	28	24	12	34	1.91
42252572--42252714	44	3.2	44	85	3	187	27	27	16	28	1.97
42255564--42256159	44	13.6	44	69	13	349	28	23	15	32	1.95
42255564--42256159	175	3.4	175	93	0	985	28	23	15	32	1.95
42263636--42263678	20	2.2	20	100	0	86	27	20	18	32	1.96
42266175--42266303	46	2.8	46	96	0	231	28	29	22	19	1.98
42268686--42268773	29	3.0	29	80	8	97	56	15	17	10	1.66
42268686--42268764	15	5.4	15	77	10	83	58	13	17	10	1.63
42268697--42268773	15	5.2	15	75	9	77	55	15	16	11	1.68
42271678--42271849	93	1.8	93	96	0	317	27	30	22	20	1.98
42271670--42271845	46	3.8	46	81	10	232	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42274628--42274695	34	2.0	34	85	5	93	22	25	22	30	1.99
42277761--42277811	25	2.0	25	100	0	102	19	7	27	45	1.78
42281690--42281820	30	4.5	30	86	8	171	28	25	13	32	1.94
42281689--42281820	58	2.3	58	85	4	176	28	26	13	31	1.94
42284306--42284521	21	10.4	21	80	3	177	17	21	14	46	1.83
42284331--42284518	42	4.5	42	89	0	250	18	20	13	47	1.82
42284308--42284518	84	2.5	84	82	2	257	18	21	13	46	1.83
42290549--42290578	9	3.2	9	95	4	51	10	3	0	86	0.67
42293812--42293929	47	2.5	47	81	2	148	37	17	22	22	1.94
42293813--42293929	24	5.0	24	74	3	112	37	17	21	23	1.94
42293813--42293953	47	2.9	47	80	9	115	36	18	21	24	1.95
42300439--42300499	23	2.6	23	80	10	61	37	3	3	55	1.32
42300459--42300543	16	5.1	16	69	23	52	34	4	3	57	1.37
42300459--42300529	28	2.7	26	80	8	74	35	4	4	56	1.38
42303887--42303923	15	2.5	16	87	12	53	21	24	10	43	1.84
42303887--42303936	15	3.5	15	79	15	52	22	24	12	42	1.87
42312783--42312812	12	2.4	13	88	11	53	70	0	6	23	1.11
42314220--42314283	24	2.7	23	81	13	67	37	3	3	56	1.31
42314244--42314313	28	2.4	29	83	4	79	35	4	4	55	1.39
42321962--42322043	6	13.3	6	73	20	55	32	1	2	63	1.15
42321925--42322058	27	5.1	26	71	21	84	35	2	1	59	1.22
42321963--42322045	22	3.8	22	78	13	75	33	1	2	62	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42321958--42322042	18	4.8	17	77	13	66	32	1	2	63	1.15
42321951--42322059	43	2.6	41	83	12	134	33	1	1	62	1.17
42321985--42322059	20	3.7	20	82	5	87	33	2	1	62	1.17
42322406--42322440	16	2.2	16	94	0	61	22	0	5	71	1.07
42324396--42324464	31	2.2	32	82	10	79	37	15	31	14	1.88
42324587--42324651	35	1.9	33	81	12	78	27	3	9	60	1.43
42324661--42324711	26	2.0	26	88	3	77	31	0	1	66	1.03
42325603--42325656	29	1.9	29	85	7	76	57	0	7	35	1.27
42326669--42326698	2	15.5	2	93	6	53	46	0	0	53	1.00
42336350--42336382	2	16.5	2	100	0	66	48	0	0	51	1.00
42355085--42355137	21	2.5	21	84	0	70	49	28	0	22	1.50
42358375--42358441	33	2.0	33	100	0	134	29	20	29	19	1.97
42373500--42373547	25	1.9	25	83	8	62	22	8	8	60	1.52
42380861--42380915	24	2.2	24	93	3	92	27	16	14	41	1.87
42383321--42383828	126	4.0	126	90	1	768	33	18	20	27	1.96
42387312--42387354	18	2.4	18	96	0	77	41	6	27	23	1.80
42389139--42389171	14	2.4	14	94	0	57	66	0	0	33	0.92
42391586--42391649	28	2.2	29	83	5	76	48	21	0	29	1.51
42392495--42392532	19	2.0	20	85	15	53	55	5	5	34	1.45
42392546--42392575	14	2.2	13	94	5	51	66	0	10	23	1.21
42405355--42405409	21	2.6	21	77	13	58	32	5	0	61	1.19
42405388--42405468	27	3.1	26	73	18	71	35	3	2	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42409658--42409787	40	3.3	39	81	2	152	24	26	23	24	2.00
42415762--42415926	40	4.2	39	75	6	147	26	23	27	23	2.00
42415763--42415910	40	3.8	38	77	12	149	26	23	27	22	1.99
42415762--42415926	78	2.1	78	81	7	192	26	23	27	23	2.00
42423724--42423874	40	3.8	40	78	6	155	27	23	27	21	1.99
42423726--42423874	80	1.9	79	84	6	203	26	24	27	21	1.99
42423724--42423890	80	2.1	79	81	7	196	26	23	26	22	2.00
42426422--42426597	48	3.7	48	98	0	334	34	6	27	31	1.83
42426566--42426627	30	2.1	30	96	0	115	35	8	25	30	1.85
42426518--42426675	78	2.0	78	97	0	298	34	6	27	31	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335