genome.fa.s5.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  108  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33638823--33638898	34	2.2	34	95	0	134	30	19	22	27	1.98
33638920--33638962	22	1.9	23	90	4	70	23	55	2	18	1.54
33652830--33652882	26	2.0	27	85	7	74	24	15	22	37	1.92
33654361--33654453	32	2.9	32	93	0	168	37	20	6	35	1.78
33660953--33661005	26	2.0	27	85	7	74	24	15	22	37	1.92
33662485--33662581	32	3.0	32	90	0	158	38	20	6	35	1.78
33669014--33669038	2	12.5	2	100	0	50	48	0	0	52	1.00
33669582--33669611	14	2.1	14	100	0	60	70	0	0	30	0.88
33669824--33669884	27	2.3	27	79	0	68	21	29	22	26	1.99
33670307--33670363	19	3.2	19	72	23	68	24	0	12	63	1.29
33672786--33672875	37	2.4	37	96	0	171	26	22	28	22	1.99
33673965--33674000	16	2.2	17	95	5	65	66	5	0	27	1.13
33673977--33674448	102	4.6	102	87	5	655	56	13	0	29	1.43
33673977--33674434	207	2.2	207	87	5	676	56	13	0	29	1.43
33675534--33675580	2	23.5	2	95	0	85	48	2	0	48	1.13
33676708--33676823	44	2.7	43	86	2	178	25	20	28	25	1.99
33682062--33682189	9	13.6	9	76	9	121	31	0	21	46	1.57
33682062--33682189	57	2.2	57	85	0	175	31	0	21	46	1.57
33682309--33682774	241	1.9	241	95	0	844	34	14	18	32	1.91
33686912--33686948	13	2.7	14	91	8	67	51	5	0	43	1.24
33687189--33687256	15	4.6	14	73	14	57	50	30	0	19	1.48
33687189--33687292	7	14.7	7	78	6	66	48	31	0	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33687189--33687326	7	19.4	7	74	12	52	44	32	0	21	1.58
33687388--33687433	21	2.2	21	84	0	56	47	23	2	26	1.63
33687538--33687587	21	2.4	21	83	6	57	46	30	2	22	1.63
33688249--33688279	12	2.6	12	94	0	53	51	29	9	9	1.66
33692307--33692411	54	1.9	54	80	0	120	23	28	28	19	1.98
33694940--33695167	40	5.7	39	84	6	239	25	21	27	26	1.99
33694936--33695167	80	2.9	80	82	5	283	25	21	27	26	1.99
33694940--33695167	119	1.9	120	83	6	302	25	21	27	26	1.99
33697920--33697965	23	2.0	23	100	0	92	52	21	0	26	1.47
33701536--33701568	16	2.1	16	94	0	57	48	24	0	27	1.51
33703659--33703728	29	2.4	29	88	4	97	45	8	12	32	1.73
33703995--33704021	4	6.8	4	100	0	54	77	0	0	22	0.76
33709906--33709973	33	2.1	33	97	0	127	35	11	19	33	1.88
33712927--33713102	46	3.8	46	79	12	216	20	21	29	28	1.98
33712924--33713095	93	1.8	93	96	0	317	20	21	29	27	1.98
33720451--33720625	45	3.8	46	79	13	216	20	20	29	29	1.98
33722224--33722259	13	2.8	13	100	0	72	58	22	8	11	1.59
33723303--33723358	27	2.2	25	78	18	62	44	19	10	25	1.83
33726468--33726641	87	2.0	87	96	0	321	23	20	13	42	1.87
33728656--33728814	43	3.7	43	71	9	128	26	16	25	31	1.96
33730535--33730706	90	1.9	91	84	4	233	22	18	12	47	1.81
33735639--33735739	50	2.0	50	94	0	175	30	21	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33739215--33739300	42	2.0	42	93	4	147	29	22	22	26	1.99
33741227--33741296	28	2.5	28	85	0	95	34	10	27	28	1.89
33741706--33741746	21	1.9	22	85	5	57	39	4	24	31	1.76
33745763--33745797	18	1.9	18	88	0	52	80	8	0	11	0.92
33750711--33750812	25	3.9	24	70	20	80	22	12	6	57	1.59
33750760--33750810	23	2.2	24	82	3	59	17	13	9	58	1.61
33757036--33757100	29	2.2	29	97	0	121	29	16	27	26	1.97
33763727--33763777	19	2.9	17	71	23	52	78	1	15	3	0.99
33764938--33765002	29	2.2	29	91	2	103	32	16	27	23	1.96
33766409--33766487	39	2.0	40	97	2	151	25	15	32	26	1.95
33770493--33770623	34	3.9	34	78	6	131	30	12	13	42	1.82
33770492--33770623	68	1.9	68	84	6	178	30	12	13	43	1.82
33772072--33772115	19	2.4	19	85	7	56	50	0	9	40	1.34
33773753--33773792	21	2.0	21	85	5	55	30	22	32	15	1.94
33773908--33773962	28	2.0	28	96	0	101	49	20	10	20	1.78
33778969--33779006	16	2.2	18	86	9	53	26	21	2	50	1.62
33780285--33780411	62	2.0	62	84	3	166	26	25	22	25	2.00
33782522--33782688	67	2.5	66	81	7	169	31	16	29	22	1.96
33782546--33782729	67	2.8	64	77	8	194	28	16	30	23	1.96
33784862--33784940	35	2.3	35	77	4	88	7	25	15	51	1.69
33787053--33787090	8	4.8	8	81	12	51	84	0	2	13	0.73
33798514--33798583	17	4.0	18	78	12	83	15	0	34	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33798516--33798588	9	8.3	9	72	17	55	13	0	31	54	1.39
33798556--33798856	137	2.2	133	88	5	428	33	2	21	41	1.67
33798838--33798888	8	6.6	8	80	17	54	15	0	33	50	1.44
33798698--33799119	164	2.6	161	85	9	572	34	3	23	39	1.71
33799006--33799045	17	2.6	15	88	11	55	15	0	37	47	1.45
33798683--33799140	160	2.8	160	85	8	624	34	3	23	38	1.72
33798870--33799372	273	1.9	262	84	7	663	36	3	21	38	1.70
33799023--33799269	113	2.2	114	89	2	381	39	4	19	36	1.72
33799249--33799304	17	3.2	17	77	5	67	16	1	28	53	1.53
33799443--33799746	129	2.4	126	93	2	520	36	17	19	26	1.94
33801004--33801220	64	3.3	64	62	16	152	31	26	16	25	1.96
33800970--33801254	136	2.1	136	96	0	525	31	25	17	24	1.97
33801261--33801308	21	2.3	21	85	7	62	33	52	2	12	1.51
33801501--33801553	26	2.0	26	85	7	72	26	13	22	37	1.91
33803033--33803116	26	3.2	26	96	0	150	36	25	4	33	1.77
33804462--33804683	3	71.3	3	65	25	65	59	3	4	32	1.32
33804511--33804608	50	1.9	51	80	13	114	62	2	0	35	1.07
33804518--33804608	32	2.8	33	80	11	98	62	2	0	35	1.07
33804516--33804609	33	2.7	36	77	12	99	61	2	0	36	1.08
33804470--33804699	10	23.6	10	64	24	84	59	3	3	33	1.30
33804511--33804708	27	7.1	27	69	20	108	60	2	3	34	1.26
33806500--33807495	210	4.7	210	91	0	1582	29	21	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33806500--33807487	419	2.4	418	91	1	1575	29	21	18	30	1.97
33819531--33819752	3	71.3	3	65	25	65	59	3	4	32	1.32
33819580--33819677	50	1.9	51	80	13	114	62	2	0	35	1.07
33819587--33819677	32	2.8	33	80	11	98	62	2	0	35	1.07
33819585--33819678	33	2.7	36	77	12	99	61	2	0	36	1.08
33819723--33819772	12	4.2	12	75	17	50	62	0	0	38	0.96
33819539--33819768	10	23.6	10	64	24	84	59	3	3	33	1.30
33822588--33822621	18	1.9	17	88	5	50	52	11	11	23	1.70
33822635--33822696	19	3.6	19	68	28	66	46	12	20	19	1.83
33822630--33822699	31	2.3	31	97	0	131	48	12	20	18	1.80
33822609--33822677	6	11.3	6	72	9	59	50	11	17	20	1.76
33822845--33822952	54	2.0	52	84	8	137	37	22	22	17	1.94
33822845--33822952	27	4.0	27	80	8	114	37	22	22	17	1.94
33823111--33823175	22	3.0	22	75	8	69	30	21	27	20	1.98
33823520--33823583	27	2.4	28	76	12	71	39	25	18	17	1.92
33823567--33823886	27	11.9	27	85	0	426	25	21	17	35	1.95
33823878--33824295	27	15.6	27	79	5	357	31	9	19	39	1.83
33823945--33824295	53	6.6	53	84	6	352	31	9	18	40	1.82
33823945--33824295	80	4.4	79	80	4	316	31	9	18	40	1.82
33827492--33827534	18	2.4	18	88	0	59	44	9	27	18	1.80
33829322--33829368	22	2.2	21	85	14	62	46	8	17	27	1.76
33830233--33830278	23	2.0	24	82	4	58	39	2	23	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33838420--33838458	15	2.5	15	84	16	53	69	2	0	28	1.02
33838408--33838459	25	2.1	25	82	7	61	69	1	0	28	0.99
33839865--33839905	2	20.5	2	100	0	82	51	0	0	48	1.00
33841857--33841895	10	3.9	10	83	12	53	69	2	10	17	1.28
33844244--33844300	23	2.5	23	82	5	62	59	0	15	24	1.36
33844364--33844417	22	2.5	21	84	6	72	55	1	12	29	1.48
33844351--33844419	17	4.1	17	73	14	54	53	1	14	30	1.50
33844353--33844422	33	2.1	33	81	5	79	54	1	15	28	1.50
33844613--33844671	28	2.1	28	84	9	75	57	0	15	27	1.38
33844662--33844927	21	12.9	21	68	24	104	62	0	13	23	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335