genome.fa.s5.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  98  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31292339--31292380	15	2.9	15	92	3	68	0	47	0	52	1.00
31292980--31293060	21	3.8	22	71	21	64	33	2	3	60	1.27
31292980--31293105	13	9.8	12	68	25	64	33	3	2	61	1.25
31293042--31293104	15	4.5	15	75	15	71	34	4	0	60	1.18
31292939--31293145	97	2.2	96	80	14	220	33	4	3	58	1.34
31293141--31293190	20	2.3	22	80	19	61	28	10	6	56	1.56
31293345--31293407	29	2.1	30	85	8	85	39	6	3	50	1.44
31305707--31306232	74	7.0	72	75	16	414	27	17	22	32	1.96
31305918--31306469	161	3.3	160	85	6	624	28	16	20	34	1.94
31306154--31306469	87	3.6	88	84	3	379	29	16	18	35	1.93
31306404--31306439	14	2.7	13	83	8	54	30	13	8	47	1.73
31306154--31306469	175	1.8	175	85	6	453	29	16	18	35	1.93
31307669--31307693	8	3.1	8	100	0	50	84	0	0	16	0.63
31308346--31308415	32	2.2	32	78	17	74	38	4	2	54	1.35
31308343--31308405	25	2.7	22	77	15	63	39	3	1	55	1.25
31308391--31308463	21	3.5	21	74	22	66	31	1	4	63	1.22
31308411--31308478	24	2.9	25	80	12	74	32	1	2	63	1.18
31308400--31308498	24	4.0	24	75	16	71	32	4	4	59	1.35
31308545--31308601	23	2.5	24	83	13	75	29	8	5	56	1.52
31308758--31308819	28	2.2	28	83	11	74	38	4	3	53	1.39
31312250--31312278	2	14.5	2	100	0	58	51	0	0	48	1.00
31315341--31315382	21	2.0	20	86	4	57	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31320810--31320865	24	2.3	24	93	0	94	35	12	8	42	1.74
31320849--31320931	34	2.4	34	84	7	89	28	15	16	38	1.90
31321136--31321164	2	14.5	2	100	0	58	51	0	0	48	1.00
31321322--31321384	31	2.0	31	93	0	108	25	12	1	60	1.42
31325385--31325409	6	4.2	6	100	0	50	0	36	32	32	1.58
31325952--31325990	17	2.3	17	86	0	60	43	0	0	56	0.99
31329229--31329267	21	1.9	20	89	5	60	48	2	10	38	1.51
31329577--31329603	6	4.5	6	100	0	54	14	14	0	70	1.17
31334936--31334996	31	2.0	31	100	0	122	26	13	14	45	1.81
31335778--31335810	17	1.9	17	88	11	50	27	3	3	66	1.21
31335903--31335941	3	13.0	3	100	0	78	33	0	0	66	0.92
31336626--31336679	20	2.7	19	80	8	63	40	0	0	59	0.98
31339820--31339853	17	1.9	18	88	5	52	38	0	5	55	1.24
31345241--31345266	12	2.2	12	100	0	52	42	0	7	50	1.31
31345386--31345417	2	16.0	2	100	0	64	50	0	0	50	1.00
31345575--31345612	17	2.3	16	86	13	51	57	2	7	31	1.41
31345998--31346037	18	2.2	18	86	0	53	52	15	7	25	1.68
31346016--31346089	26	2.8	26	73	15	71	55	6	2	35	1.41
31346063--31346122	3	20.0	3	78	13	61	61	3	5	30	1.33
31349518--31349563	17	2.7	19	78	21	57	21	0	4	73	1.00
31353033--31353102	26	2.7	26	88	2	106	22	32	20	24	1.97
31357364--31357424	32	1.9	32	86	3	88	22	22	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31357618--31357737	24	5.0	24	92	3	188	27	21	21	29	1.99
31357787--31357842	11	5.5	11	71	16	57	32	19	12	35	1.89
31357788--31357853	20	3.3	20	95	0	114	30	21	13	34	1.92
31357890--31357939	25	2.0	25	88	0	73	26	16	24	34	1.95
31361798--31361836	20	2.0	20	90	10	62	30	2	0	66	1.05
31362196--31362256	23	2.6	25	76	10	65	54	4	1	39	1.32
31362259--31362300	19	2.2	19	83	8	50	69	2	2	26	1.13
31367047--31367171	46	2.7	46	95	2	216	22	16	25	36	1.94
31369533--31369606	25	3.0	25	77	0	85	36	9	25	28	1.87
31372871--31372951	41	2.0	40	92	2	119	39	3	12	44	1.60
31384064--31384115	15	3.5	15	86	5	79	34	0	13	51	1.41
31384064--31384118	14	3.8	14	88	7	83	36	0	12	50	1.41
31384486--31384572	21	4.0	23	80	10	92	14	21	25	37	1.92
31386372--31386403	2	16.0	2	100	0	64	50	0	0	50	1.00
31390067--31390123	15	3.9	15	90	2	89	36	0	12	50	1.40
31390496--31390582	21	4.0	23	80	10	92	14	21	25	37	1.92
31399206--31399243	20	1.9	20	88	0	58	26	28	34	10	1.90
31399215--31399261	22	2.2	20	85	7	58	23	21	40	14	1.90
31399970--31400003	16	2.0	18	88	11	54	88	5	5	0	0.64
31404624--31404677	24	2.2	24	84	9	74	40	18	3	37	1.69
31406411--31406435	12	2.1	12	100	0	50	0	0	8	92	0.40
31415257--31415437	40	4.6	40	78	8	165	24	24	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31415256--31415407	78	1.9	79	84	5	200	25	23	26	24	2.00
31424203--31424249	24	2.0	24	83	8	60	46	4	19	29	1.68
31425239--31425418	54	3.2	54	67	23	154	37	20	3	38	1.71
31425214--31425445	115	2.0	116	99	0	457	38	18	4	38	1.71
31425800--31426285	93	5.3	92	92	2	676	20	24	14	39	1.91
31425800--31426293	46	10.8	46	90	3	656	21	24	14	39	1.91
31429744--31429789	23	2.0	23	95	0	83	28	17	23	30	1.97
31430345--31430500	73	2.1	75	90	4	246	32	23	18	26	1.97
31430421--31430835	83	4.8	84	85	7	514	35	19	18	26	1.95
31430421--31430835	173	2.4	171	85	5	570	35	19	18	26	1.95
31430421--31430835	172	2.4	172	85	5	572	35	19	18	26	1.95
31444299--31444380	21	3.7	21	67	15	58	56	3	4	35	1.39
31444288--31444386	44	2.4	39	75	17	92	57	5	4	33	1.39
31446727--31446777	24	2.2	22	86	6	66	74	3	21	0	0.98
31453478--31453530	3	17.7	3	100	0	106	67	0	0	32	0.91
31468680--31468704	5	5.0	5	100	0	50	40	20	0	40	1.52
31475116--31475145	15	2.0	15	100	0	60	0	46	0	53	1.00
31475469--31475502	16	2.0	18	88	11	54	32	14	0	52	1.42
31476901--31476937	18	2.1	18	89	0	56	59	2	5	32	1.34
31477559--31477617	31	1.9	31	82	6	75	52	3	1	42	1.28
31477707--31477737	15	2.1	15	93	0	53	38	0	6	54	1.26
31477877--31477924	10	4.8	10	77	10	53	22	4	2	70	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31477880--31477942	21	3.1	21	82	13	78	19	6	1	73	1.13
31481844--31481883	20	2.0	20	85	0	53	45	27	0	27	1.54
31487958--31487996	16	2.4	16	86	0	51	43	28	5	23	1.75
31488162--31488250	30	3.0	30	93	0	151	21	6	46	25	1.76
31489511--31490266	74	9.9	73	76	10	606	32	22	16	27	1.96
31489044--31490266	75	15.9	77	71	13	595	32	21	17	28	1.96
31489511--31490266	152	5.0	150	74	9	595	32	22	16	27	1.96
31489625--31490358	228	3.2	231	82	8	793	33	22	16	27	1.96
31490090--31490266	71	2.5	71	86	5	232	27	27	17	27	1.98
31505759--31506425	73	8.7	74	75	9	416	26	17	23	32	1.96
31505660--31506173	232	2.2	232	90	0	794	26	16	21	34	1.95
31505763--31506894	148	7.4	151	74	12	735	28	17	21	32	1.96
31505763--31506862	305	3.6	296	77	11	849	28	17	21	32	1.96
31506453--31506894	75	5.9	75	82	7	488	31	17	19	31	1.95
31508665--31508719	25	2.3	23	78	12	58	43	3	16	36	1.65
31508775--31508849	22	3.3	22	75	10	69	60	5	5	29	1.41
31508781--31508989	25	8.4	25	70	12	117	56	4	6	32	1.45
31508745--31508916	76	2.2	81	80	7	192	58	4	6	31	1.42
31508944--31508995	24	2.2	23	83	10	61	59	0	3	36	1.16
31509277--31509315	16	2.4	16	86	0	51	43	28	5	23	1.75
31509477--31509560	18	5.3	18	64	30	57	22	7	46	23	1.76
31509472--31509566	30	3.2	30	87	0	154	20	6	47	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31510164--31510225	30	2.1	30	96	0	115	33	14	14	37	1.87
31512684--31512720	19	1.9	19	100	0	74	37	21	16	24	1.93
31517154--31517194	21	2.0	21	90	0	64	29	21	29	19	1.98
31524902--31524932	12	2.6	12	94	0	53	12	48	29	9	1.73
31526465--31526497	9	3.7	9	95	0	57	39	12	18	30	1.87
31526465--31526510	9	5.0	9	89	2	56	39	15	15	30	1.88
31526869--31526914	24	2.0	23	87	8	67	28	43	4	23	1.73
31532466--31532562	32	3.0	32	95	0	176	39	22	6	31	1.79
31532479--31532583	32	3.3	30	80	12	113	41	19	5	33	1.75
31534451--31534513	24	2.4	25	77	20	67	38	3	34	23	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335