genome.fa.s5.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  147  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43253797--43254042	43	5.7	43	93	2	386	23	18	34	22	1.96
43261521--43261561	2	20.5	2	100	0	82	51	0	0	48	1.00
43261654--43261726	29	2.5	29	93	0	101	26	31	16	26	1.96
43265651--43265840	9	20.6	9	72	11	107	37	1	13	47	1.52
43265651--43265813	71	2.3	69	84	4	202	38	1	12	47	1.50
43265687--43265871	96	2.0	90	86	9	259	38	2	11	47	1.53
43265627--43265840	114	1.9	114	84	5	290	38	1	13	47	1.51
43265687--43265871	87	2.1	87	84	7	234	38	2	11	47	1.53
43265945--43265974	15	2.0	15	100	0	60	53	0	0	46	1.00
43266128--43266945	273	3.0	275	97	0	1570	39	12	13	35	1.81
43267421--43267972	183	3.0	183	97	0	1032	42	15	15	27	1.86
43270894--43270941	15	3.5	15	68	26	52	29	0	52	18	1.46
43270889--43270944	25	2.1	27	90	9	98	33	0	44	21	1.52
43271222--43271279	28	2.1	28	83	6	73	36	29	1	32	1.68
43271256--43271299	21	2.1	21	91	0	70	34	34	2	29	1.70
43271521--43271554	7	4.9	7	96	0	59	29	52	0	17	1.45
43271543--43271586	21	2.0	22	91	4	72	43	38	0	18	1.50
43271679--43271878	41	4.9	41	89	5	298	21	22	21	35	1.96
43271679--43271878	82	2.5	82	93	0	330	21	22	21	35	1.96
43273364--43273411	22	2.2	22	88	0	69	20	33	20	25	1.97
43276281--43276421	26	5.4	26	93	0	228	36	24	7	31	1.82
43276281--43276421	52	2.7	52	96	0	255	36	24	7	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43280032--43280073	19	2.2	19	100	0	84	33	28	9	28	1.88
43285436--43285642	53	3.8	53	75	3	189	20	23	17	38	1.93
43286922--43287089	86	2.0	86	98	0	327	35	11	10	42	1.77
43288574--43288688	60	1.9	60	82	3	142	42	12	4	40	1.62
43295822--43295851	11	2.6	12	89	10	53	36	16	0	46	1.47
43296202--43296236	11	3.3	11	92	4	54	62	0	0	37	0.95
43300049--43300106	28	2.1	28	100	0	116	39	3	34	22	1.71
43300139--43300163	13	1.9	13	100	0	50	56	0	8	36	1.29
43300375--43300415	20	2.2	19	91	8	66	9	0	31	58	1.31
43303567--43303644	38	2.1	38	97	0	147	34	2	23	39	1.68
43304598--43304636	10	3.9	10	80	12	53	69	2	7	20	1.26
43305301--43305501	99	2.0	98	87	0	285	33	24	12	29	1.93
43306324--43306373	26	2.0	26	96	4	93	16	18	12	54	1.72
43309934--43310062	50	2.5	50	86	5	170	34	17	23	24	1.95
43310038--43310186	31	4.8	31	87	0	199	28	18	25	27	1.98
43310204--43310391	47	3.9	48	85	6	204	29	14	26	30	1.95
43312172--43312217	24	2.0	23	86	4	65	73	0	2	23	0.94
43312171--43312239	6	11.7	6	77	10	54	76	1	2	18	0.98
43318585--43318625	2	21.0	2	95	5	75	51	0	0	48	1.00
43323268--43323338	3	23.7	3	100	0	142	32	0	0	67	0.91
43326111--43326166	22	2.5	22	88	0	76	51	35	8	3	1.51
43326092--43326166	11	6.8	11	75	6	53	53	29	10	6	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43331369--43331400	15	2.1	15	94	0	55	15	6	9	68	1.36
43333016--43333065	20	2.7	19	80	20	61	42	2	2	54	1.23
43332975--43333172	68	3.0	66	73	9	206	41	3	4	50	1.38
43332977--43333087	36	3.2	34	69	18	95	41	4	4	49	1.43
43334705--43334932	127	1.8	125	82	9	295	37	17	13	31	1.88
43335387--43335846	26	17.9	25	66	15	100	60	4	7	26	1.43
43335387--43335494	50	2.2	51	80	6	123	64	2	7	25	1.33
43335543--43335603	27	2.3	26	83	8	79	60	4	3	31	1.34
43335663--43335813	24	6.2	23	75	17	137	62	1	7	27	1.32
43335387--43336022	312	2.0	313	99	0	1247	60	4	7	27	1.45
43335678--43335818	76	1.9	72	82	7	176	63	2	7	26	1.31
43335855--43335915	27	2.3	26	83	8	79	60	6	3	29	1.38
43335968--43336031	25	2.6	26	80	14	82	62	3	6	28	1.34
43336021--43336058	12	3.2	12	100	0	76	68	15	0	15	1.22
43336224--43336277	24	2.2	26	83	6	67	61	1	3	33	1.25
43338116--43338755	44	14.2	44	68	12	255	28	22	17	31	1.97
43338335--43338731	139	2.9	139	85	5	508	28	21	17	32	1.96
43338783--43339213	88	4.9	88	82	2	517	26	22	23	27	1.99
43339241--43339514	131	2.1	131	86	2	372	26	21	21	29	1.99
43339712--43339835	64	1.9	64	93	0	212	34	13	19	32	1.91
43340291--43340474	92	2.0	92	97	0	350	32	21	13	33	1.92
43341040--43341134	49	1.9	49	82	4	120	12	29	11	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43346148--43346378	126	1.8	126	81	9	292	36	16	15	30	1.91
43346852--43346976	25	5.0	25	77	3	99	62	3	8	26	1.38
43346985--43347045	27	2.3	26	81	8	70	60	4	3	31	1.34
43347305--43347378	25	3.0	25	80	4	78	59	4	2	33	1.30
43347326--43347378	24	2.2	24	86	3	70	62	1	1	33	1.17
43348241--43348286	16	2.9	16	81	18	60	71	4	13	10	1.27
43348292--43348335	19	2.3	19	88	4	70	54	13	15	15	1.71
43348808--43348841	2	17.0	2	93	0	59	47	0	2	50	1.16
43350523--43350574	25	2.0	26	85	3	70	25	13	23	38	1.91
43352058--43352165	26	4.2	26	95	2	175	36	24	5	34	1.79
43355143--43355250	38	2.9	37	80	6	112	26	30	19	23	1.98
43356087--43356131	17	2.5	19	79	17	60	35	24	15	24	1.94
43363073--43363239	40	4.2	40	81	2	176	24	27	22	25	2.00
43363089--43363239	80	1.9	79	83	6	198	23	27	22	25	2.00
43364065--43364110	17	2.5	19	74	22	53	34	23	17	23	1.96
43374436--43374476	21	2.0	21	90	0	64	39	19	26	14	1.90
43374444--43374528	21	4.0	21	82	0	98	48	16	20	15	1.81
43376736--43376865	50	2.6	50	81	6	149	26	27	18	27	1.98
43376736--43376895	49	3.3	48	78	11	139	24	28	19	27	1.98
43376783--43376903	50	2.5	50	83	2	156	22	31	19	26	1.98
43378599--43378627	2	14.5	2	100	0	58	51	0	0	48	1.00
43378878--43378916	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43380097--43380138	21	2.0	22	85	4	59	71	4	2	21	1.16
43386568--43386607	21	2.0	21	90	5	64	20	27	40	12	1.88
43387753--43388270	146	3.6	147	83	6	532	24	29	18	27	1.98
43387753--43388315	48	11.8	49	71	12	317	24	29	18	27	1.98
43387908--43388318	147	2.9	135	80	12	379	24	30	18	26	1.98
43387861--43388315	97	4.8	95	74	12	323	24	30	18	27	1.98
43388653--43388709	30	1.9	30	88	0	87	33	28	7	31	1.84
43389310--43389351	20	2.1	20	95	0	75	38	14	16	30	1.89
43392992--43393201	55	3.9	55	79	9	225	24	24	16	34	1.95
43400755--43400941	55	3.5	53	79	15	197	22	25	17	34	1.96
43405009--43405670	332	2.0	332	98	0	1270	35	20	4	40	1.72
43405909--43405978	31	2.2	33	82	17	85	42	0	4	52	1.20
43406039--43406220	97	1.9	97	98	0	355	25	16	5	52	1.65
43409335--43409380	25	1.9	23	86	8	65	28	0	8	63	1.24
43410258--43410291	2	17.0	2	100	0	68	50	0	0	50	1.00
43411770--43411849	42	1.9	42	87	5	117	11	41	26	21	1.86
43412776--43412930	47	3.3	46	75	12	120	24	28	18	29	1.98
43413609--43413665	29	2.0	28	83	12	73	33	5	26	35	1.79
43417113--43417328	46	4.7	46	91	0	315	39	15	23	21	1.91
43417063--43417328	138	2.0	130	87	5	379	39	15	23	21	1.92
43424361--43424417	29	2.0	28	83	12	73	33	5	26	35	1.79
43425900--43425936	9	4.1	9	100	0	74	35	10	21	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43426582--43426640	30	2.0	30	93	0	100	28	27	15	28	1.96
43426959--43426983	12	2.1	12	100	0	50	60	16	8	16	1.58
43434266--43434331	23	2.6	25	79	18	75	34	0	0	65	0.93
43434266--43434325	25	2.3	26	85	8	77	31	0	0	68	0.90
43434889--43434932	19	2.2	20	92	4	72	65	0	29	4	1.12
43438582--43438648	12	5.6	12	75	7	73	1	41	34	22	1.63
43440261--43440288	11	2.5	11	100	0	56	57	7	0	35	1.26
43441346--43441414	3	22.7	3	82	8	77	0	34	0	65	0.93
43441545--43441608	27	2.4	27	100	0	128	12	35	35	15	1.85
43441666--43441723	25	2.2	27	84	9	75	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335