Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  308  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91328125--91328163
20
2.0
20
100
0
78
35
15
15
33
1.89
91334940--91335063
34
3.6
34
84
2
142
43
16
8
32
1.77
91336913--91337185
141
1.9
142
80
6
322
32
18
19
29
1.96
91338841--91338885
23
2.0
23
82
8
56
37
8
13
40
1.76
91344711--91344755
18
2.5
18
77
0
54
80
4
4
11
1.01
91351455--91351502
21
2.3
21
88
0
69
41
18
8
31
1.80
91351654--91351700
21
2.2
21
77
7
51
17
6
34
42
1.74
91351778--91351820
21
2.0
21
82
8
52
20
13
25
39
1.90
91351987--91352015
15
1.9
15
100
0
58
44
0
6
48
1.29
91352941--91352981
15
2.7
16
77
11
50
48
0
19
31
1.49
91364313--91364524
46
4.9
39
79
15
183
36
16
24
23
1.94
91364353--91364568
46
4.7
46
89
0
288
38
15
23
22
1.92
91364303--91364568
138
2.0
130
85
5
352
38
15
23
22
1.92
91375968--91376089
39
3.1
39
89
2
181
28
23
4
43
1.72
91376691--91376747
22
2.5
23
88
2
80
35
29
3
31
1.75
91383124--91383172
18
2.7
19
81
12
59
44
4
36
14
1.64
91383589--91383759
85
2.0
85
82
4
211
26
14
17
42
1.87
91386774--91386880
51
2.1
51
82
0
124
27
7
20
44
1.78
91388126--91388195
35
2.0
35
88
5
106
38
11
22
27
1.89
91395136--91395183
23
2.0
23
84
11
62
29
4
4
62
1.32
91399643--91399681
18
2.1
19
85
4
53
56
2
0
41
1.13
91399660--91399698
20
2.0
19
85
5
51
56
5
0
38
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91410037--91410159
50
2.4
51
85
5
169
34
13
22
29
1.93
91410141--91410281
31
4.5
31
89
0
210
29
19
28
23
1.98
91410408--91410505
42
2.3
42
86
6
128
28
12
28
30
1.93
91410427--91410522
42
2.3
42
82
8
115
31
14
23
30
1.95
91411243--91411274
4
8.2
4
93
6
57
21
0
0
78
0.76
91428234--91428267
17
1.9
18
94
5
61
32
11
0
55
1.36
91428280--91428326
24
2.0
24
83
8
60
27
8
2
61
1.36
91431247--91431295
10
5.0
10
79
16
50
30
2
0
67
1.02
91431242--91431293
15
3.6
15
79
7
63
30
1
0
67
1.02
91432911--91432960
10
5.0
10
86
13
68
20
8
2
70
1.23
91437176--91437205
15
2.0
15
93
0
51
60
30
0
10
1.30
91439897--91439922
9
2.9
9
100
0
52
23
0
0
76
0.78
91441098--91441136
12
3.2
12
80
20
53
64
0
0
35
0.94
91441074--91441136
25
2.5
25
89
0
90
66
3
0
30
1.07
91443683--91443707
12
2.1
12
100
0
50
32
8
8
52
1.60
91448118--91448174
21
2.7
21
81
7
71
14
35
29
21
1.92
91452863--91452901
2
19.0
2
94
5
69
48
2
0
48
1.15
91455313--91455368
26
2.2
26
100
0
112
42
14
16
26
1.86
91455478--91455507
6
4.8
6
95
4
51
63
3
0
33
1.11
91463728--91463766
21
1.9
21
89
5
62
69
0
0
30
0.89
91465381--91465444
31
2.1
31
100
0
128
29
21
9
39
1.85
91466102--91466126
8
3.1
8
100
0
50
48
0
12
40
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91466843--91466917
39
1.9
39
94
0
132
53
26
1
18
1.53
91473641--91473703
30
2.1
30
93
0
108
25
3
14
57
1.52
91474195--91474235
15
2.7
15
96
0
73
31
26
0
41
1.56
91478132--91478156
12
2.1
12
100
0
50
44
40
8
8
1.63
91479135--91479337
101
2.0
101
97
0
379
24
19
9
45
1.80
91480232--91480279
25
1.9
25
100
0
96
47
16
8
27
1.75
91490521--91490629
53
2.1
53
100
0
218
25
11
16
46
1.80
91490694--91490820
64
2.0
64
80
9
143
38
7
7
46
1.60
91490868--91490924
20
2.8
21
71
7
55
61
3
0
35
1.13
91494482--91494548
21
3.3
21
69
12
59
13
25
20
40
1.89
91494464--91494564
39
2.6
39
88
0
157
13
25
22
37
1.92
91495892--91495972
35
2.3
35
86
0
117
35
25
18
19
1.95
91498490--91498554
18
3.6
18
68
25
55
21
12
6
60
1.54
91501358--91501385
6
4.7
6
100
0
56
46
0
0
53
1.00
91501968--91502002
18
1.9
18
94
0
61
28
28
17
25
1.97
91502553--91502616
26
2.5
26
89
0
110
35
25
7
31
1.84
91502553--91502618
13
5.1
13
79
0
78
36
24
7
31
1.83
91504663--91504708
23
2.0
23
100
0
92
34
13
4
47
1.62
91504668--91504717
23
2.2
23
82
7
57
36
18
6
40
1.75
91506436--91506468
17
2.1
16
88
11
50
30
0
0
69
0.88
91506515--91506573
21
2.8
22
80
7
61
22
0
8
69
1.15
91506544--91506593
26
2.0
24
84
7
64
32
0
6
62
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91506972--91507017
20
2.3
20
81
7
58
60
17
17
4
1.51
91507729--91507859
42
3.1
42
74
2
120
19
31
20
28
1.97
91508408--91508434
14
1.9
14
100
0
54
59
14
18
7
1.58
91509044--91509095
26
2.0
26
88
0
77
42
1
21
34
1.64
91510018--91510157
45
3.1
43
84
6
154
42
8
22
27
1.82
91511507--91511559
27
2.0
27
82
14
65
75
3
1
18
1.05
91514399--91514467
34
2.0
34
97
0
129
46
14
13
26
1.81
91517771--91517856
36
2.4
36
80
0
100
19
30
22
27
1.98
91519190--91519232
16
2.6
16
96
3
77
18
11
18
51
1.76
91520274--91520299
3
8.7
3
100
0
52
65
0
0
34
0.93
91520298--91520333
3
12.0
3
100
0
72
33
0
0
66
0.92
91520802--91520872
37
1.9
37
88
2
108
40
7
12
39
1.70
91521356--91521482
60
2.1
60
85
4
168
40
14
7
37
1.74
91526236--91526280
13
3.6
13
76
11
58
57
0
4
37
1.19
91526239--91526279
12
3.4
12
80
12
57
58
0
4
36
1.20
91526231--91526279
24
2.0
25
96
4
91
55
0
4
40
1.19
91526229--91526296
28
2.6
27
86
13
97
54
1
2
41
1.24
91531278--91531486
41
5.1
39
82
8
186
39
22
20
17
1.92
91531309--91531486
82
2.2
81
86
7
236
39
23
20
16
1.92
91531527--91531596
23
3.1
23
82
11
74
48
27
1
22
1.59
91532523--91532647
41
3.0
40
81
2
151
40
12
20
26
1.88
91536207--91536390
43
4.3
43
92
0
278
20
21
34
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91536484--91536523
21
2.0
20
85
5
53
40
27
20
12
1.88
91542028--91542060
9
3.8
9
88
8
50
24
0
0
75
0.80
91542255--91542285
15
2.1
15
100
0
62
54
12
0
32
1.38
91549312--91549401
23
3.8
23
79
2
90
27
17
22
32
1.97
91549361--91549454
26
3.7
26
87
4
131
27
15
24
31
1.96
91550773--91550843
21
3.3
21
69
11
72
40
14
18
26
1.88
91551666--91551748
3
27.3
3
73
20
59
30
3
1
65
1.17
91551670--91551752
18
4.4
18
81
13
87
31
3
1
63
1.19
91551954--91552012
12
5.3
11
76
15
50
37
0
5
57
1.21
91551984--91552013
2
15.0
2
92
0
51
46
0
0
53
1.00
91552109--91552146
2
19.0
2
88
0
58
47
2
0
50
1.15
91555063--91555107
24
1.9
24
90
4
74
28
6
0
64
1.19
91556384--91556412
5
5.8
5
100
0
58
58
0
0
41
0.98
91560219--91560253
11
3.1
11
84
8
52
31
0
0
68
0.90
91561202--91561240
19
2.1
19
85
9
53
66
5
5
23
1.32
91561439--91561486
3
16.7
3
78
8
55
66
2
2
29
1.14
91561439--91561482
17
2.6
17
92
0
70
68
2
2
27
1.14
91561578--91561611
4
8.5
4
86
0
50
70
0
5
23
1.09
91562333--91562360
12
2.3
12
100
0
56
78
0
14
7
0.95
91562377--91562426
3
16.7
3
100
0
100
32
0
0
68
0.90
91564145--91564251
42
2.5
42
98
0
205
29
14
33
22
1.93
91564260--91564329
27
2.5
28
86
2
97
27
14
25
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91572273--91572379
42
2.5
42
98
0
205
29
14
33
22
1.93
91572388--91572457
27
2.5
28
86
2
97
27
14
25
32
1.94
91573883--91573927
3
15.0
3
100
0
90
33
0
0
66
0.92
91573936--91573987
21
2.6
21
87
6
81
75
7
11
5
1.19
91577412--91577448
5
7.4
5
91
8
58
81
0
2
16
0.81
91578362--91578578
104
2.0
107
84
12
286
33
4
6
55
1.46
91579769--91579796
14
2.0
14
100
0
56
35
21
7
35
1.81
91580600--91580824
99
2.3
99
82
3
247
20
39
16
24
1.91
91580592--91580819
33
6.9
33
78
5
201
19
38
17
25
1.93
91581187--91581216
14
2.1
14
93
0
51
36
0
6
56
1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335