Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  135  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39888076--39888123
11
4.5
11
82
17
66
20
0
0
79
0.74
39888076--39888123
21
2.3
21
92
7
80
20
0
0
79
0.74
39888078--39888125
15
3.3
15
78
21
50
20
0
0
79
0.74
39890095--39890138
10
4.5
10
82
2
54
25
2
2
70
1.10
39890101--39890143
20
2.2
20
86
0
59
20
6
2
69
1.23
39890278--39890313
17
2.1
17
100
0
72
50
11
0
38
1.38
39892056--39892098
20
2.0
20
82
8
50
41
16
2
39
1.61
39893149--39893186
18
2.1
18
90
0
58
31
2
0
65
1.06
39898552--39898584
13
2.5
13
90
9
50
51
0
0
48
1.00
39899240--39899300
30
2.0
30
90
0
95
55
11
6
26
1.59
39901423--39901465
15
2.9
15
80
13
52
60
0
9
30
1.28
39901423--39901463
14
2.8
14
82
10
55
60
0
9
29
1.28
39915526--39915555
14
2.1
15
93
6
53
0
53
0
46
1.00
39915513--39915565
22
2.4
22
78
12
63
0
54
0
45
0.99
39916116--39916146
13
2.3
14
94
5
55
38
0
9
51
1.35
39921979--39922086
44
2.4
44
87
3
144
29
23
13
33
1.93
39927924--39928031
44
2.4
44
87
3
144
29
23
13
33
1.93
39937374--39937652
71
3.9
71
84
2
387
29
16
22
31
1.96
39937283--39937941
160
4.2
152
91
6
981
29
16
21
32
1.95
39937679--39937812
71
1.9
71
90
0
214
30
16
23
29
1.96
39937839--39938139
140
2.3
130
86
8
405
28
16
19
34
1.94
39939427--39939479
22
2.4
24
78
18
69
0
52
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39940031--39940061
13
2.3
14
94
5
55
38
0
9
51
1.35
39947089--39947135
15
3.1
16
79
11
55
59
10
2
27
1.42
39947333--39947357
3
8.3
3
100
0
50
64
0
0
36
0.94
39948785--39948840
28
1.9
29
85
7
78
26
3
7
62
1.38
39948773--39948849
30
2.6
30
77
10
86
31
3
5
59
1.37
39948828--39948888
23
2.7
22
80
7
68
39
4
1
54
1.32
39948838--39948899
23
2.7
23
80
9
65
38
6
0
54
1.26
39949276--39949300
13
1.9
13
100
0
50
24
8
0
68
1.16
39953174--39953232
9
6.7
9
90
1
93
22
25
11
40
1.88
39953176--39953232
18
3.2
18
97
2
107
22
26
12
38
1.89
39961263--39961644
43
8.8
43
72
11
217
35
22
19
21
1.96
39961324--39961713
87
4.5
87
83
5
475
36
21
21
21
1.96
39961367--39961688
44
7.4
45
68
10
186
36
20
22
20
1.95
39963412--39963482
11
7.1
11
76
15
57
32
1
5
60
1.29
39963424--39963479
27
2.0
28
89
6
87
26
1
7
64
1.29
39963427--39963475
16
3.2
16
69
16
50
28
2
6
63
1.30
39963467--39963517
23
2.3
22
83
6
66
37
3
1
56
1.29
39963822--39963859
2
18.5
2
94
5
67
50
2
0
47
1.15
39963939--39963963
13
1.9
13
100
0
50
24
8
0
68
1.16
39965035--39965085
3
17.0
3
100
0
102
66
0
0
33
0.92
39970767--39970832
25
2.7
25
73
2
62
51
7
0
40
1.30
39971865--39971923
22
2.7
23
73
17
63
67
0
1
30
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39977851--39977891
20
2.0
22
90
9
68
73
0
0
26
0.84
39979281--39979513
116
2.0
116
96
0
430
24
12
10
51
1.71
39979923--39980055
43
3.1
42
84
3
167
29
30
17
22
1.96
39979923--39980104
43
4.3
40
80
7
150
30
29
16
24
1.96
39979921--39980104
86
2.2
85
81
5
212
30
28
16
23
1.96
39980106--39980187
42
2.0
42
85
4
112
25
13
24
36
1.92
39980461--39980594
66
2.0
65
83
8
164
12
24
18
44
1.85
39982607--39982659
28
1.9
27
84
3
70
26
26
18
28
1.98
39982621--39982755
60
2.2
59
83
8
157
25
25
20
27
1.99
39982748--39982803
20
2.8
20
83
2
69
33
23
16
26
1.95
39986033--39986156
5
24.0
5
95
4
180
37
0
0
62
0.96
39986765--39986869
45
2.3
45
88
0
156
21
18
18
41
1.90
39986849--39986890
6
6.8
6
86
2
57
19
21
16
42
1.89
39990043--39990270
46
5.0
46
91
1
323
22
24
14
38
1.92
39994693--39994868
46
3.8
46
78
12
207
22
21
27
28
1.99
39994690--39994860
93
1.8
93
94
0
306
22
21
28
28
1.99
39999437--39999484
5
9.6
5
100
0
96
39
0
0
60
0.97
40000111--40000137
6
4.5
6
100
0
54
18
18
14
48
1.82
40000117--40000223
45
2.4
45
87
3
153
21
17
18
42
1.90
40000111--40000235
45
2.6
50
75
16
136
21
17
18
42
1.89
40010498--40010593
49
2.0
49
100
0
192
45
9
10
34
1.71
40013427--40013456
10
2.8
11
90
10
53
23
0
0
76
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40013421--40013467
23
2.1
22
84
11
60
23
0
0
76
0.78
40014720--40014769
22
2.3
22
96
0
91
42
10
10
38
1.72
40017410--40017439
15
2.0
15
100
0
60
13
6
13
66
1.43
40017413--40017447
15
2.3
15
90
5
52
14
5
17
62
1.49
40017613--40017790
52
3.5
50
78
8
175
28
25
14
30
1.95
40017653--40017790
52
2.7
51
85
3
181
28
26
13
31
1.93
40023570--40023695
49
2.5
51
85
5
159
29
30
13
26
1.94
40028200--40028301
23
4.5
23
81
8
102
32
21
23
22
1.98
40028224--40028300
23
3.3
23
87
0
109
35
22
23
19
1.96
40031330--40031382
26
2.1
25
82
10
63
52
5
16
24
1.65
40031365--40031462
29
3.3
30
70
12
76
53
7
10
29
1.61
40031925--40031995
10
7.4
10
73
9
58
71
1
1
25
1.02
40034686--40034717
15
2.1
15
100
0
64
68
12
0
18
1.20
40034683--40034720
18
2.1
18
95
0
67
68
13
0
18
1.21
40034689--40034725
12
3.1
12
88
0
56
67
8
0
24
1.17
40034692--40034725
3
11.3
3
93
0
50
67
5
0
26
1.13
40034854--40034886
10
3.4
10
95
4
59
72
0
0
27
0.85
40037120--40037261
40
3.5
40
83
1
124
27
23
26
22
1.99
40037159--40037287
40
3.2
39
84
6
152
24
22
27
25
2.00
40042884--40042919
15
2.4
15
100
0
72
47
16
13
22
1.82
40047391--40047474
26
3.2
26
94
0
141
35
22
5
35
1.79
40048524--40048595
36
2.0
36
89
7
112
36
22
8
33
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40049020--40049059
22
1.9
22
90
10
66
7
17
5
70
1.30
40049212--40049257
14
3.1
15
78
18
51
50
2
0
47
1.13
40054843--40055006
71
2.3
71
100
0
328
18
28
17
35
1.94
40054843--40055040
71
2.8
70
91
3
258
20
28
17
33
1.95
40061945--40062108
71
2.3
71
100
0
328
18
28
17
35
1.94
40061945--40062142
71
2.8
70
91
3
258
20
28
17
33
1.95
40064701--40065228
27
19.6
27
87
2
722
27
22
9
40
1.85
40066552--40066608
9
5.9
9
73
15
51
35
8
21
35
1.84
40066550--40066620
20
3.5
20
94
0
124
35
11
21
32
1.89
40066561--40066615
11
5.4
11
70
16
55
36
12
20
30
1.90
40066665--40066831
24
7.0
24
90
4
241
28
22
21
27
1.99
40066665--40066831
47
3.5
47
88
6
239
28
22
21
27
1.99
40066665--40066831
71
2.3
71
92
3
273
28
22
21
27
1.99
40068460--40068517
22
2.7
22
84
10
68
3
17
8
70
1.26
40069314--40069364
2
25.5
2
87
0
75
45
1
3
49
1.32
40070179--40070524
179
1.9
179
91
2
570
33
16
8
41
1.77
40072105--40072135
16
1.9
16
93
0
53
19
0
9
70
1.14
40077584--40077625
23
1.9
23
85
9
61
54
2
14
28
1.52
40080296--40080335
21
1.9
21
89
0
62
52
25
7
15
1.68
40080988--40081020
2
16.5
2
93
0
57
51
3
0
45
1.16
40085131--40085223
23
4.0
23
83
8
109
36
2
20
40
1.65
40085131--40085241
46
2.4
46
84
3
152
36
4
19
38
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40085143--40085241
23
4.3
22
79
7
81
38
3
19
39
1.67
40090618--40090670
25
2.2
25
86
10
74
77
3
13
5
1.09
40091031--40091089
28
2.1
28
87
0
82
54
5
15
25
1.61
40091138--40091194
29
2.0
27
86
6
78
56
8
14
21
1.65
40093487--40093565
28
2.7
28
80
5
86
49
7
13
29
1.70
40093519--40093610
44
2.1
43
87
2
130
50
4
13
32
1.61
40093568--40093645
28
2.6
28
72
8
66
61
2
11
24
1.42
40093927--40094124
98
2.0
98
91
1
317
32
9
16
40
1.81
40094272--40094313
20
2.2
19
87
12
59
52
0
0
47
1.00
40094272--40094313
19
2.2
20
87
12
61
52
0
0
47
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335