genome.fa.s5.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  149  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43745253--43745300	15	3.1	15	77	14	53	20	0	4	75	0.97
43745234--43745294	31	1.9	32	86	3	88	21	1	4	72	1.13
43746078--43746110	16	2.1	17	88	11	52	81	0	0	18	0.68
43751618--43751656	19	2.1	19	95	0	69	33	12	15	38	1.85
43759874--43759943	33	2.1	33	97	0	131	32	2	7	57	1.41
43762122--43762159	19	2.0	20	89	5	60	36	0	13	50	1.42
43766586--43766737	27	5.7	27	88	2	209	42	20	6	30	1.78
43766586--43766809	81	2.8	80	77	6	227	38	20	8	33	1.82
43766586--43766781	54	3.6	54	81	7	211	40	19	7	31	1.80
43766586--43766781	27	7.3	27	81	6	186	40	19	7	31	1.80
43766760--43767134	27	13.9	27	86	3	461	27	23	8	39	1.84
43767113--43767210	27	3.6	27	79	6	83	39	22	7	30	1.81
43767204--43767259	27	2.1	26	83	9	69	37	10	12	39	1.78
43767313--43767377	27	2.4	27	84	5	87	35	20	24	20	1.96
43768534--43768581	25	1.9	25	86	0	69	33	25	16	25	1.96
43768625--43768683	20	3.0	20	92	0	100	35	11	20	32	1.89
43768734--43768899	24	7.0	24	91	4	248	28	22	21	26	1.99
43768734--43768880	70	2.1	71	92	2	242	29	22	21	26	1.99
43769091--43769185	31	3.1	31	95	0	163	38	14	21	25	1.91
43773940--43773987	23	2.1	23	84	7	62	18	4	4	72	1.17
43778423--43778494	27	2.7	28	80	8	87	37	15	23	23	1.93
43778422--43778503	27	3.0	27	80	3	85	35	14	24	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43778647--43778739	35	2.7	35	75	6	98	29	22	19	29	1.98
43782949--43782973	9	2.8	9	100	0	50	56	0	0	44	0.99
43784622--43784658	3	12.3	3	100	0	74	0	35	0	64	0.94
43794483--43794511	15	2.0	15	93	6	51	0	17	0	82	0.66
43820808--43820891	20	4.2	20	75	6	89	14	27	16	41	1.87
43820817--43820902	20	4.3	20	72	8	77	13	31	16	38	1.88
43820828--43820908	40	2.0	40	90	0	126	18	29	16	35	1.92
43824834--43824974	70	2.0	70	95	0	255	36	7	12	43	1.72
43828965--43829015	18	2.9	18	75	13	61	17	0	21	60	1.36
43830665--43830707	19	2.3	18	88	4	59	37	2	39	20	1.66
43837970--43838006	18	2.0	19	89	5	58	10	37	0	51	1.37
43840930--43841271	47	7.3	47	91	0	558	27	30	8	33	1.87
43841122--43841199	25	3.2	25	62	17	65	30	30	5	33	1.79
43848985--43849040	29	1.9	29	100	0	112	37	14	17	30	1.90
43850551--43850641	44	2.1	44	97	0	173	28	3	25	42	1.70
43851711--43851748	2	19.0	2	100	0	76	50	0	0	50	1.00
43852055--43852169	46	2.5	47	81	4	128	24	18	20	36	1.95
43871398--43871519	55	2.2	55	83	2	156	25	34	27	13	1.93
43871414--43871539	55	2.3	55	80	9	141	28	32	24	14	1.94
43871935--43871979	16	2.8	16	76	10	56	22	2	2	73	1.05
43875022--43875094	37	2.0	37	97	0	137	24	32	10	31	1.90
43878341--43878454	44	2.7	43	82	6	119	23	14	28	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43878361--43878454	44	2.2	43	85	7	122	22	14	28	34	1.94
43878603--43878681	40	2.0	40	94	0	140	40	6	18	34	1.76
43878615--43878685	19	3.7	19	71	15	65	39	5	19	35	1.76
43882466--43882531	32	2.1	32	97	0	123	31	21	24	22	1.98
43886261--43886295	17	2.1	17	100	0	70	37	5	11	45	1.64
43887812--43887867	28	2.0	28	100	0	112	39	17	7	35	1.78
43887820--43887882	28	2.4	27	84	12	78	39	19	4	36	1.72
43897463--43897500	19	2.0	20	85	15	53	39	23	0	36	1.55
43897724--43897848	46	2.7	46	92	1	207	30	27	20	21	1.98
43897726--43897867	46	3.1	45	84	7	137	29	28	20	21	1.98
43902135--43902231	28	3.5	28	97	1	178	18	10	26	44	1.82
43904046--43904089	19	2.4	18	85	7	54	40	9	0	50	1.34
43906485--43906532	21	2.4	19	87	12	78	16	8	25	50	1.73
43906490--43906532	21	2.0	21	100	0	86	13	9	23	53	1.69
43908369--43908412	19	2.4	18	85	7	54	40	9	0	50	1.34
43912596--43912633	19	2.0	20	85	15	53	39	23	0	36	1.55
43916551--43916734	46	3.9	49	75	9	150	23	30	18	26	1.98
43922983--43923025	22	1.9	23	86	13	63	27	9	11	51	1.69
43923662--43923719	30	2.0	29	83	10	73	48	12	8	31	1.70
43923673--43923750	31	2.6	30	83	6	86	43	14	10	32	1.78
43925926--43925958	12	2.8	12	100	0	66	9	24	42	24	1.83
43926979--43927037	19	3.1	19	74	13	66	37	20	28	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43926962--43927022	19	3.2	20	71	15	56	29	18	36	16	1.92
43926939--43927071	39	3.4	39	86	1	187	34	19	29	16	1.94
43932920--43933086	40	4.2	40	82	2	185	24	26	22	26	2.00
43940914--43941080	40	4.2	40	82	2	185	24	26	22	26	2.00
43946348--43946388	20	2.0	20	100	0	82	39	9	4	46	1.58
43952233--43952415	37	4.9	37	92	0	294	26	30	19	24	1.98
43952561--43952651	46	2.0	46	84	0	119	27	31	7	32	1.85
43952625--43953060	47	9.1	47	88	5	611	26	30	12	31	1.92
43952648--43953038	98	4.0	99	91	3	596	26	29	12	31	1.93
43952982--43953059	25	3.2	25	65	23	67	29	34	10	25	1.89
43958480--43958518	18	2.2	18	95	0	69	58	10	2	28	1.44
43958552--43958615	29	2.2	29	88	5	94	28	21	4	45	1.72
43964717--43964779	21	3.0	21	80	0	72	23	33	30	12	1.92
43965977--43966146	43	4.0	43	77	6	184	27	15	24	32	1.95
43966934--43967026	47	2.0	47	85	4	125	17	31	23	27	1.97
43968227--43968292	19	3.6	18	77	16	64	69	7	0	22	1.13
43971361--43971399	20	2.0	20	94	0	69	20	30	35	12	1.90
43977583--43977750	40	4.2	40	80	7	171	24	27	22	25	2.00
43977583--43977750	80	2.1	80	83	6	207	24	27	22	25	2.00
43985152--43985222	35	2.0	35	91	0	115	18	18	19	43	1.88
43985741--43985769	15	1.9	15	100	0	58	44	27	6	20	1.77
43988600--43988656	22	2.7	21	84	12	73	36	7	8	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43989454--43989492	18	2.2	18	85	0	51	56	7	5	30	1.49
43989526--43989589	29	2.2	29	86	5	85	28	26	3	42	1.70
43990358--43990433	26	2.9	25	75	7	71	23	10	23	42	1.85
43996200--43996230	16	1.9	16	93	0	53	9	9	6	74	1.23
43997811--43997880	35	2.0	35	94	0	122	24	15	21	38	1.92
44001028--44001182	68	2.4	64	76	12	152	27	25	15	31	1.96
44003775--44003805	14	2.2	14	94	0	53	12	51	16	19	1.76
44012465--44012574	31	3.5	31	86	0	148	31	25	14	28	1.95
44012795--44012864	25	2.8	25	91	0	104	25	21	25	27	1.99
44013677--44013755	27	2.9	27	92	3	124	20	27	22	29	1.98
44013794--44014180	27	14.3	27	78	4	206	32	9	20	37	1.84
44013879--44014102	81	2.8	79	83	5	252	28	8	21	40	1.84
44013905--44014105	80	2.5	81	86	4	255	28	8	22	39	1.84
44013794--44014126	54	6.1	54	73	6	251	30	9	21	39	1.85
44014078--44014315	54	4.4	54	85	1	199	39	7	21	30	1.82
44014114--44014315	27	7.5	27	88	2	253	42	8	21	28	1.82
44014103--44014315	54	3.9	54	87	1	293	40	7	21	29	1.82
44014112--44014315	81	2.5	81	87	0	309	41	8	21	28	1.82
44016588--44016702	31	3.8	31	88	2	171	30	23	16	29	1.96
44016922--44017016	25	3.8	25	95	0	163	24	23	26	26	2.00
44018127--44018200	27	2.7	27	83	4	87	22	25	18	32	1.97
44018244--44018576	27	12.3	27	79	5	172	29	9	21	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44018357--44018535	54	3.4	51	82	7	196	27	8	22	41	1.83
44018350--44018552	80	2.5	79	82	7	221	28	9	22	39	1.85
44018564--44018765	27	7.5	27	89	0	278	40	8	22	28	1.83
44021200--44021363	71	2.3	71	100	0	328	18	28	17	35	1.94
44021200--44021397	71	2.8	70	91	3	258	20	28	17	33	1.95
44028770--44028933	71	2.3	71	100	0	328	18	28	17	35	1.94
44028770--44028967	71	2.8	70	91	3	258	20	28	17	33	1.95
44030432--44030492	30	2.1	30	90	3	97	37	21	14	26	1.92
44040119--44040160	6	7.3	6	83	5	52	78	2	0	19	0.86
44041721--44041759	16	2.4	16	87	8	53	79	0	0	20	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335