genome.fa.s5.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  222  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66659703--66659798	47	2.0	47	95	0	174	32	11	11	44	1.76
66659993--66660022	14	2.1	15	93	6	53	60	0	3	36	1.14
66662914--66662989	22	3.7	21	76	15	68	40	17	6	35	1.75
66662950--66663040	19	4.9	19	90	8	152	36	14	10	38	1.81
66663391--66663589	44	4.5	45	78	5	199	26	28	13	32	1.93
66663391--66663589	89	2.2	89	82	4	240	26	28	13	32	1.93
66663603--66663897	78	3.8	78	87	1	421	26	23	18	31	1.98
66663839--66664427	220	2.7	219	90	2	950	26	21	18	33	1.96
66670562--66670786	40	5.6	40	80	7	242	26	23	26	23	2.00
66670562--66670822	80	3.3	80	81	3	285	26	23	26	24	2.00
66670562--66670823	120	2.2	120	82	6	309	26	23	25	24	2.00
66673693--66673736	19	2.4	19	85	7	56	50	0	9	40	1.34
66675522--66675590	28	2.5	28	90	2	113	43	26	10	20	1.83
66677956--66677999	19	2.4	19	85	7	56	50	0	9	40	1.34
66679786--66679854	28	2.5	28	90	2	113	43	26	10	20	1.83
66686145--66686369	40	5.6	40	82	5	249	25	24	26	23	2.00
66686145--66686405	80	3.3	80	82	3	294	26	24	26	23	2.00
66686145--66686406	120	2.2	120	82	6	318	26	24	25	23	2.00
66708619--66708719	28	3.5	28	86	6	114	29	13	26	29	1.94
66716582--66716682	28	3.5	28	86	6	114	29	13	26	29	1.94
66724353--66724377	13	1.9	13	100	0	50	0	44	0	56	0.99
66728983--66729197	39	5.5	39	87	4	292	20	21	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66735251--66735437	71	2.7	68	91	5	254	19	28	17	35	1.94
66735274--66735437	71	2.3	71	98	0	319	18	28	17	35	1.93
66735274--66735471	71	2.8	70	90	3	249	20	28	16	34	1.95
66738828--66738978	40	3.8	40	77	13	134	27	23	26	22	2.00
66738864--66738994	40	3.3	40	79	2	156	25	23	27	23	2.00
66750081--66750122	14	2.9	14	82	3	57	2	16	0	80	0.81
66750073--66750120	20	2.6	19	84	12	64	2	16	0	81	0.79
66751600--66751748	80	1.9	80	81	2	183	22	30	24	22	1.99
66751641--66751748	40	2.7	38	85	8	128	21	29	25	23	1.99
66755068--66755182	39	2.9	39	86	2	158	26	20	28	24	1.99
66755082--66755220	40	3.5	40	88	2	183	23	21	30	24	1.99
66755066--66755246	79	2.3	77	77	11	186	25	20	28	25	1.99
66760474--66760543	27	2.6	27	93	2	113	30	28	14	27	1.95
66768410--66768479	27	2.6	27	93	2	113	30	28	14	27	1.95
66770286--66770470	63	2.9	64	78	9	198	29	16	30	24	1.96
66773064--66773133	27	2.6	27	93	2	113	30	28	14	27	1.95
66775275--66775446	93	1.8	93	96	0	317	27	29	21	20	1.98
66775268--66775443	46	3.8	46	79	12	216	28	29	21	20	1.98
66782845--66783016	93	1.8	93	96	0	317	27	29	21	20	1.98
66782838--66783013	46	3.8	46	79	12	216	28	29	21	20	1.98
66784726--66784765	17	2.4	17	100	0	80	35	0	25	40	1.56
66787530--66787564	17	2.1	17	94	0	61	37	0	20	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66787998--66788026	9	3.0	10	90	10	51	31	0	0	68	0.89
66787998--66788038	20	2.1	20	86	13	59	29	0	2	68	1.03
66797021--66797056	2	18.0	2	100	0	72	50	0	0	50	1.00
66797363--66797432	31	2.3	31	82	5	88	11	32	32	22	1.90
66807243--66807344	29	3.5	29	90	0	150	23	33	15	27	1.95
66815103--66815204	29	3.5	29	90	0	150	23	33	15	27	1.95
66822551--66822575	11	2.3	11	100	0	50	24	0	12	64	1.27
66823505--66823767	30	8.8	30	86	1	321	31	16	18	33	1.93
66827146--66827216	33	2.1	34	84	2	90	28	23	22	25	2.00
66827146--66827239	28	3.2	28	72	16	82	26	25	23	24	2.00
66829256--66829453	39	5.1	39	84	2	272	27	20	23	27	1.99
66842862--66842905	21	2.1	21	82	0	52	29	6	29	34	1.83
66844985--66845149	46	3.6	44	76	10	152	29	21	29	20	1.98
66845213--66845343	47	2.7	47	81	5	156	27	19	27	25	1.99
66848104--66848362	46	5.6	46	69	12	179	21	17	28	32	1.96
66848146--66848308	47	3.5	47	71	14	156	22	19	28	30	1.97
66848104--66848355	93	2.7	93	88	0	396	21	17	28	31	1.96
66855439--66855799	46	7.7	46	72	15	183	27	18	29	23	1.98
66860045--66860180	45	3.0	45	89	2	191	47	12	18	22	1.82
66860872--66860901	9	3.4	9	95	4	53	10	0	0	90	0.47
66866841--66866909	31	2.2	31	84	0	84	36	39	4	20	1.72
66869869--66869899	15	2.1	15	100	0	62	58	6	0	35	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66872524--66872548	2	12.5	2	100	0	50	52	0	0	48	1.00
66874668--66874715	23	2.1	23	84	7	62	64	4	0	31	1.12
66874910--66874999	45	2.0	45	100	0	180	37	26	2	33	1.69
66876160--66876216	16	3.5	16	81	15	64	33	3	1	61	1.23
66876910--66876977	31	2.2	31	84	5	84	41	10	16	32	1.82
66877482--66877526	25	1.9	24	86	13	67	46	0	0	53	1.00
66877567--66877597	16	2.0	16	93	6	55	29	0	0	70	0.87
66877684--66877729	18	2.7	17	83	6	58	54	8	0	36	1.32
66880295--66880358	27	2.4	27	92	2	103	51	6	3	39	1.43
66880845--66880900	9	5.5	11	71	26	52	42	1	0	55	1.10
66884633--66884678	22	2.1	22	88	4	67	54	15	10	19	1.70
66890438--66890463	2	13.0	2	100	0	52	50	0	0	50	1.00
66891009--66891083	29	2.6	29	89	4	107	26	16	32	25	1.96
66900541--66900603	21	3.0	21	79	9	58	42	17	4	34	1.70
66902974--66902999	13	2.0	13	100	0	52	23	30	23	23	1.99
66916396--66916425	14	2.1	14	100	0	60	33	6	23	36	1.81
66922131--66922163	2	16.5	2	100	0	66	48	0	0	51	1.00
66922490--66922539	3	16.7	3	95	0	91	66	2	0	32	1.03
66923033--66923090	25	2.5	22	83	8	71	55	1	0	43	1.10
66925539--66925571	10	3.4	10	83	8	50	33	0	0	66	0.92
66929380--66929421	16	2.5	17	76	7	50	45	0	0	54	0.99
66930866--66930904	11	3.6	12	77	22	50	23	0	5	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66930862--66930904	20	2.2	20	87	8	61	20	0	4	74	1.00
66932837--66932877	2	20.5	2	100	0	82	48	0	0	51	1.00
66940071--66940117	21	2.3	21	81	3	60	31	0	27	40	1.57
66940692--66940737	24	2.0	23	86	4	65	13	21	26	39	1.90
66946407--66946450	17	2.6	16	86	10	61	34	0	20	45	1.51
66946851--66946899	25	2.0	25	100	0	98	40	8	18	32	1.80
66948250--66948327	38	2.1	38	100	0	156	34	17	17	29	1.94
66949689--66949788	42	2.4	42	81	5	130	28	18	22	32	1.97
66954493--66954676	40	4.6	39	75	6	138	26	23	27	22	2.00
66954533--66954721	80	2.4	81	77	4	186	23	24	29	22	1.99
66962612--66962795	40	4.6	39	75	6	138	26	23	27	22	2.00
66962652--66962840	80	2.4	81	77	4	186	23	24	29	22	1.99
66972402--66972573	93	1.8	93	96	0	317	27	30	22	20	1.98
66972394--66972569	46	3.8	46	81	10	232	28	29	21	20	1.98
66978861--66978910	20	2.5	20	86	0	64	34	10	32	24	1.88
66981261--66981596	50	6.8	50	78	3	310	26	19	30	22	1.98
66984344--66984403	27	2.3	26	85	2	75	35	20	23	21	1.96
66984400--66984435	2	18.0	2	100	0	72	50	0	0	50	1.00
66984776--66984809	8	4.2	8	96	0	59	8	35	26	29	1.87
66991392--66991724	50	6.8	49	85	4	334	27	18	30	24	1.97
67023589--67023709	27	4.5	27	84	4	154	29	18	8	43	1.79
67023605--67023738	54	2.5	54	82	4	164	31	20	7	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67023689--67023936	27	9.2	27	76	11	170	40	21	8	29	1.84
67023589--67023737	81	1.8	81	79	2	174	32	18	7	41	1.78
67023689--67024020	54	6.1	54	74	9	228	39	20	9	30	1.83
67023757--67023936	81	2.2	80	82	5	211	40	20	10	28	1.85
67023913--67023999	27	3.1	27	76	12	86	40	14	8	36	1.76
67024052--67024144	27	3.4	27	86	2	116	35	19	24	20	1.96
67024953--67025021	25	2.8	25	88	2	104	27	26	21	24	1.99
67024953--67025034	24	3.4	24	78	8	76	31	23	20	24	1.98
67025241--67025380	31	4.5	31	90	0	226	27	17	24	30	1.97
67026141--67026233	26	3.6	26	78	5	98	36	33	10	19	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335