genome.fa.s5.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  138  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40600374--40600398	13	1.9	13	100	0	50	48	8	4	40	1.51
40600577--40600627	20	2.5	20	81	6	68	47	0	0	52	1.00
40608846--40608900	22	2.5	23	77	14	62	60	0	5	34	1.20
40608974--40609031	17	3.2	17	76	16	55	50	0	25	24	1.50
40612427--40612552	63	2.0	63	90	0	198	31	13	25	29	1.94
40613780--40613840	19	3.1	20	85	4	88	34	18	24	22	1.96
40621633--40621669	19	1.9	19	100	0	74	32	21	10	35	1.88
40624150--40624495	124	2.8	124	88	0	487	23	18	23	34	1.96
40624403--40624608	110	1.9	110	86	6	301	26	19	21	32	1.97
40628996--40629071	29	2.6	29	85	0	98	40	19	14	25	1.89
40633710--40633989	94	3.1	94	62	22	234	31	8	23	36	1.84
40633653--40634009	178	2.0	179	98	0	689	31	8	22	37	1.84
40634005--40634067	28	2.3	28	91	2	101	34	20	7	36	1.82
40637783--40637815	2	16.5	2	100	0	66	51	0	0	48	1.00
40639187--40639222	2	18.0	2	100	0	72	50	0	0	50	1.00
40647623--40647654	2	16.0	2	100	0	64	50	0	0	50	1.00
40652571--40652599	2	14.5	2	100	0	58	48	0	0	51	1.00
40653192--40653251	30	2.0	30	100	0	120	50	6	10	33	1.62
40653790--40654173	48	8.0	48	93	1	619	35	6	26	31	1.81
40653790--40654173	190	2.0	191	92	1	635	35	6	26	31	1.81
40654314--40654416	37	2.8	37	95	0	179	24	20	31	24	1.98
40658858--40658941	43	1.9	44	90	2	134	22	21	32	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40659222--40659302	38	2.1	40	86	4	112	22	23	24	29	1.99
40659299--40659413	45	2.6	45	83	6	146	23	22	26	26	2.00
40664769--40664837	30	2.3	30	92	0	111	14	27	40	17	1.88
40667404--40667457	26	2.1	26	96	0	99	35	18	18	27	1.94
40670916--40670972	25	2.3	23	77	16	60	31	14	14	40	1.85
40673963--40674007	23	2.0	23	82	8	56	37	8	13	40	1.76
40674750--40674829	34	2.4	34	89	0	115	33	23	17	25	1.96
40675399--40675432	12	2.8	12	86	0	50	32	47	17	2	1.63
40679671--40679736	19	3.2	21	87	6	64	36	19	9	34	1.84
40679688--40679785	19	5.2	19	92	7	164	35	16	10	37	1.82
40679688--40679785	36	2.6	37	90	9	153	35	16	10	37	1.82
40679902--40679940	21	1.9	20	84	5	51	7	2	17	71	1.21
40679974--40680058	28	3.0	28	89	1	116	27	14	34	24	1.94
40689315--40689339	11	2.3	11	100	0	50	72	0	0	28	0.86
40697111--40697153	16	2.7	16	88	0	68	55	20	16	6	1.64
40697347--40697449	28	3.7	28	85	0	143	24	14	33	28	1.94
40697347--40697466	56	2.1	57	85	1	161	28	14	31	25	1.94
40698698--40698731	17	1.9	17	88	5	50	44	11	14	29	1.81
40700172--40700206	16	2.2	16	100	0	70	45	31	0	22	1.53
40701522--40701941	224	1.9	224	92	2	718	37	17	13	31	1.89
40703531--40703584	26	2.1	26	96	0	99	31	12	11	44	1.78
40713489--40713518	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40722009--40722159	75	2.0	75	94	0	266	35	19	17	27	1.94
40726869--40726922	24	2.2	25	74	9	58	31	16	3	48	1.64
40727003--40727097	34	2.8	34	86	0	118	44	31	6	17	1.74
40727077--40727179	54	1.9	54	85	0	143	38	28	15	17	1.90
40730237--40730272	11	3.1	11	85	14	54	38	2	0	58	1.13
40730237--40730275	13	3.2	12	86	13	53	41	2	0	56	1.13
40733404--40733611	48	4.3	48	86	4	260	30	20	25	24	1.98
40733441--40733811	48	7.7	49	77	7	187	28	19	26	24	1.99
40737350--40737442	39	2.3	40	81	5	118	38	18	17	25	1.92
40737486--40737589	40	2.6	40	81	4	120	29	22	17	30	1.96
40738077--40738113	7	5.3	7	93	0	56	16	0	48	35	1.46
40738053--40738158	7	15.0	7	72	8	54	17	1	39	40	1.61
40738343--40738390	15	3.3	15	76	5	53	25	0	29	45	1.53
40738338--40738387	22	2.3	21	82	3	55	28	0	26	46	1.53
40739160--40739261	8	12.9	8	82	15	99	60	2	0	36	1.12
40739187--40739273	7	12.0	7	86	6	102	57	1	0	41	1.06
40739187--40739261	22	3.4	22	85	10	100	61	1	0	37	1.05
40739483--40739513	1	31.0	1	100	0	62	100	0	0	0	0.00
40739565--40739593	10	2.9	10	100	0	58	17	20	10	51	1.74
40740681--40740757	40	1.9	40	86	5	111	31	15	15	37	1.89
40740802--40740854	28	1.9	27	88	3	79	56	3	3	35	1.35
40745077--40745223	43	3.4	43	84	4	156	24	10	31	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40746932--40746964	12	2.8	12	100	0	66	66	0	9	24	1.20
40747875--40747934	10	6.0	10	83	11	70	68	1	6	23	1.22
40747875--40747932	30	1.9	30	86	13	84	68	1	6	22	1.22
40749930--40750039	53	2.1	53	94	0	193	32	17	13	36	1.89
40758467--40758514	20	2.4	19	86	13	62	45	0	20	33	1.52
40758944--40758991	5	9.6	5	90	0	69	41	0	16	41	1.48
40759347--40759398	22	2.3	23	75	15	56	36	1	21	40	1.64
40764649--40764721	29	2.5	29	90	0	92	24	31	16	27	1.96
40768638--40768676	6	6.5	6	96	0	69	82	0	2	15	0.79
40774991--40775031	16	2.6	15	85	11	55	19	0	2	78	0.87
40775663--40775701	17	2.3	17	100	0	78	25	33	25	15	1.95
40775746--40775817	32	2.2	32	87	0	108	26	20	31	20	1.98
40776611--40776641	13	2.4	13	94	0	53	9	0	16	74	1.07
40778751--40778779	13	2.2	13	100	0	58	20	0	31	48	1.50
40782329--40782426	19	5.2	19	88	7	146	36	10	16	36	1.82
40782335--40782426	36	2.4	37	91	7	125	36	10	16	35	1.84
40786954--40786984	13	2.4	13	94	0	53	9	0	16	74	1.07
40787127--40787189	26	2.5	25	89	5	83	49	12	12	25	1.76
40787137--40787189	26	2.0	26	96	0	97	49	15	13	22	1.79
40789663--40789700	14	2.7	15	84	8	53	44	0	0	55	0.99
40792818--40793003	24	7.9	24	69	12	100	61	4	4	29	1.35
40792857--40792991	46	3.0	44	81	7	148	64	5	2	26	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40792940--40793152	25	8.7	24	68	19	84	64	3	3	28	1.27
40792857--40792991	45	3.0	44	83	3	153	64	5	2	26	1.31
40792982--40793126	18	8.4	18	70	16	78	64	4	2	28	1.26
40793083--40793161	28	2.8	29	84	9	110	62	1	5	31	1.25
40794723--40794842	46	2.7	46	78	8	131	28	23	18	30	1.98
40794718--40795244	44	11.9	43	73	13	236	28	22	17	31	1.97
40794813--40794879	33	2.0	33	94	0	116	29	26	17	25	1.98
40794770--40794919	77	1.9	77	84	5	196	30	24	18	27	1.98
40794691--40795013	167	1.9	168	89	1	506	29	21	18	30	1.97
40795072--40795245	45	3.9	46	86	3	178	27	24	17	31	1.97
40795072--40795198	45	2.8	45	92	0	200	27	22	18	31	1.97
40795640--40795787	46	3.2	46	80	3	156	24	25	15	35	1.94
40796184--40796340	53	3.0	53	93	0	260	52	7	16	23	1.69
40796188--40796330	26	5.4	26	63	24	75	53	7	16	23	1.68
40799817--40799862	13	3.5	13	87	0	65	36	45	0	17	1.49
40803378--40803512	17	7.4	17	64	19	67	31	4	14	49	1.63
40803373--40803518	37	3.9	37	96	0	274	31	4	15	47	1.66
40803395--40803495	20	5.3	20	63	13	70	31	5	15	46	1.70
40803356--40803514	74	2.1	75	93	4	279	31	5	15	48	1.66
40803518--40803559	9	4.7	9	81	0	57	28	7	14	50	1.69
40806744--40806799	26	2.2	26	100	0	112	35	26	7	30	1.83
40807385--40807429	19	2.3	20	88	7	67	42	13	22	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40809579--40809693	27	4.3	26	87	5	149	36	23	23	16	1.94
40809579--40809693	54	2.1	54	88	3	169	36	23	23	16	1.94
40811297--40811405	26	4.2	26	96	1	184	36	24	4	33	1.76
40815315--40815429	27	4.3	26	87	5	149	36	23	23	16	1.94
40815315--40815429	54	2.1	54	88	3	169	36	23	23	16	1.94
40817031--40817138	25	4.2	25	94	3	189	36	25	4	33	1.77
40817031--40817138	51	2.1	51	96	0	198	36	25	4	33	1.77
40818176--40818264	46	2.0	44	86	4	124	64	8	1	25	1.30
40818215--40818264	24	2.1	24	85	7	66	66	6	2	26	1.26
40818321--40818375	28	2.0	28	82	7	67	65	7	1	25	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335