Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  29  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10574500--10574525
12
2.2
12
100
0
52
50
7
23
19
1.73
10577252--10577626
190
2.0
189
95
0
669
29
12
15
42
1.84
10578642--10578673
6
5.3
6
96
0
55
81
3
15
0
0.82
10578566--10578776
115
1.8
115
92
2
361
48
12
17
21
1.79
10592708--10592913
105
2.0
105
89
0
313
16
17
16
49
1.81
10598125--10598156
17
1.9
16
93
6
55
21
0
9
68
1.17
10600509--10600569
32
1.9
32
93
0
104
21
22
14
40
1.90
10608640--10608669
2
15.0
2
100
0
60
50
0
0
50
1.00
10609763--10609803
2
20.5
2
100
0
82
51
48
0
0
1.00
10609806--10609838
2
16.5
2
100
0
66
0
51
0
48
1.00
10611043--10611067
11
2.3
11
100
0
50
0
8
0
92
0.40
10623511--10623574
29
2.2
28
83
8
92
46
3
9
40
1.52
10623716--10623919
102
2.0
102
98
0
390
40
6
8
43
1.62
10624149--10624191
22
1.9
23
85
4
61
20
0
9
69
1.15
10628181--10628306
65
1.9
65
91
0
207
36
3
11
47
1.59
10638563--10638686
33
3.8
33
95
0
221
18
9
41
29
1.82
10643024--10643145
50
2.5
50
95
1
219
40
19
17
22
1.91
10652725--10652781
30
1.9
30
92
0
96
29
21
5
43
1.74
10653378--10653470
46
2.0
46
100
0
186
29
15
21
34
1.94
10662547--10662688
45
3.1
45
90
1
203
19
19
16
44
1.87
10662558--10662629
22
3.2
22
63
18
58
20
18
16
44
1.87
10662615--10662980
46
8.0
46
91
0
536
24
23
14
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10665642--10665779
46
2.9
49
80
13
182
28
28
20
22
1.98
10665655--10665798
46
3.1
44
76
15
141
29
28
20
22
1.98
10669457--10669517
15
3.6
18
75
22
60
68
0
0
31
0.89
10669470--10669520
14
3.7
14
78
16
54
72
0
0
27
0.85
10669472--10669521
19
2.6
19
81
12
59
74
0
0
26
0.83
10679105--10679133
14
2.1
14
100
0
58
51
20
13
13
1.75
10682418--10682450
16
2.0
17
88
5
50
45
3
0
51
1.16
10682416--10682462
14
3.1
15
76
11
51
44
4
0
51
1.21
10683889--10683917
3
9.7
3
100
0
58
31
0
0
68
0.89
10688932--10689003
34
2.1
34
100
0
144
34
27
15
22
1.94
10689297--10689332
4
9.0
4
87
0
54
47
27
0
25
1.52
10689652--10689681
2
15.0
2
100
0
60
50
0
0
50
1.00
10692515--10692548
13
2.7
12
86
13
50
79
0
17
2
0.86
10692515--10692548
6
5.3
6
89
10
50
79
0
17
2
0.86
10692520--10692548
13
2.3
13
94
5
51
82
0
17
0
0.66
10693855--10693887
3
11.0
3
93
0
57
36
0
30
33
1.58
10704555--10704579
12
2.1
12
100
0
50
24
0
56
20
1.43
10705306--10705371
17
3.9
18
73
15
59
34
0
1
63
1.04
10709931--10709965
18
1.9
18
88
0
52
25
5
0
68
1.11
10711517--10711552
16
2.2
16
90
0
54
30
8
11
50
1.67
10724318--10724362
22
2.0
22
91
0
72
33
2
15
48
1.57
10728840--10728884
22
2.0
22
91
0
72
33
2
15
48
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10736355--10736383
14
2.0
15
93
6
51
68
0
6
24
1.13
10744076--10744120
16
2.8
16
81
15
56
31
11
0
57
1.33
10747100--10747218
63
2.0
61
81
9
145
49
9
1
39
1.45
10760394--10760570
50
3.5
50
87
0
255
36
16
20
27
1.94
10760548--10760749
31
6.5
31
87
0
269
29
18
25
27
1.98
10760773--10760898
47
2.7
48
85
4
159
29
15
25
30
1.95
10768996--10769037
18
2.3
19
83
4
59
19
0
9
71
1.13
10771465--10771507
21
2.0
21
100
0
86
39
18
9
32
1.83
10772567--10772602
16
2.4
16
90
9
58
63
0
0
36
0.94
10775408--10775462
27
2.0
27
100
0
110
38
18
25
18
1.93
10775838--10775957
55
2.2
55
81
3
143
51
8
7
32
1.60
10794699--10794723
13
1.9
13
100
0
50
72
4
0
24
1.02
10794778--10794832
28
2.0
27
92
3
92
43
0
7
49
1.30
10794955--10795015
21
2.9
21
80
14
63
40
0
3
55
1.16
10795668--10795703
18
2.1
18
89
5
56
41
0
25
33
1.55
10796008--10796040
12
2.8
12
90
0
57
48
0
24
27
1.51
10795998--10796036
18
2.2
18
85
0
51
51
0
23
25
1.49
10797409--10797449
22
2.0
20
90
9
64
36
4
4
53
1.44
10797652--10797678
2
13.5
2
100
0
54
48
0
0
51
1.00
10801076--10801113
20
1.9
20
94
0
67
31
5
0
63
1.17
10803139--10803323
92
2.0
92
96
0
343
44
10
9
35
1.72
10814990--10815066
26
3.0
26
77
9
77
51
0
1
46
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10821880--10821945
31
2.0
34
91
8
111
40
0
3
56
1.15
10821921--10821965
22
2.1
21
83
4
54
35
0
6
57
1.25
10825589--10825627
15
2.4
16
87
8
53
35
2
0
61
1.10
10828342--10828466
42
3.0
42
84
4
128
40
19
24
16
1.91
10828379--10828466
21
4.2
21
72
5
70
38
18
26
17
1.92
10830035--10830076
15
2.8
15
78
10
50
61
2
0
35
1.09
10831744--10831783
18
2.2
19
86
13
57
50
2
0
47
1.14
10833442--10833487
16
2.8
17
78
12
51
23
13
0
63
1.30
10834811--10835022
107
2.0
106
89
3
329
46
4
12
36
1.63
10839462--10839514
19
2.8
19
76
0
61
49
5
0
45
1.26
10839650--10839714
25
2.6
25
80
9
78
50
1
3
44
1.26
10851393--10851454
32
1.9
31
84
12
81
45
8
0
46
1.32
10858882--10858914
6
5.5
6
100
0
66
0
33
15
51
1.43
10867257--10867367
47
2.4
47
84
6
154
35
23
16
25
1.95
10871235--10871275
9
4.3
9
85
11
55
46
4
0
48
1.23
10871339--10871373
2
17.5
2
93
0
61
45
0
2
51
1.16
10871987--10872028
2
21.0
2
100
0
84
50
0
0
50
1.00
10876430--10876474
23
2.0
23
86
8
65
31
2
4
62
1.27
10881556--10881615
19
3.0
19
76
11
57
53
1
0
45
1.10
10881656--10881695
20
2.0
21
85
14
57
57
0
2
40
1.12
10896097--10896153
22
2.6
22
86
5
71
21
5
7
66
1.36
10896122--10896153
11
2.9
11
95
0
55
21
0
9
68
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10896290--10896351
23
2.7
22
83
13
81
27
0
3
69
1.04
10896730--10896756
5
5.4
5
100
0
54
22
0
0
77
0.76
10896776--10896815
17
2.3
18
86
4
55
37
2
0
60
1.11
10901354--10901508
39
3.9
39
89
3
222
30
18
2
48
1.62
10902104--10902160
22
2.5
23
80
11
64
35
29
3
31
1.75
10902118--10902160
22
2.0
22
90
4
70
34
30
4
30
1.78
10902610--10903040
44
9.8
44
72
10
317
26
24
17
30
1.97
10902610--10903103
88
5.6
88
74
9
384
26
24
18
31
1.97
10902610--10903040
133
3.3
131
93
0
727
26
24
17
30
1.97
10902928--10903103
87
2.0
87
87
4
257
25
25
19
29
1.98
10903139--10903923
205
3.8
203
90
2
1180
30
22
17
29
1.96
10907125--10907210
46
1.9
44
88
4
127
32
13
23
30
1.93
10907127--10907251
44
2.8
45
79
4
126
34
14
22
28
1.93
10914897--10914927
15
2.1
15
100
0
62
6
38
0
54
1.26
10914971--10915020
15
3.5
14
79
15
50
42
8
24
26
1.82
10919393--10919543
39
3.9
39
93
2
243
30
18
3
47
1.65
10920152--10920207
22
2.5
23
85
2
69
35
32
3
28
1.74
10922334--10922366
17
1.9
17
93
0
57
21
0
3
75
0.93
10927396--10927471
27
2.9
26
77
18
77
60
0
1
38
1.05
10927554--10927640
34
2.6
33
77
10
88
58
2
1
37
1.18
10927585--10927651
27
2.6
27
77
17
79
62
2
0
34
1.10
10927603--10927645
20
2.2
20
82
0
50
65
2
0
32
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10927620--10927696
20
4.1
19
76
14
63
63
0
1
35
1.03
10927818--10927851
14
2.4
14
90
9
52
20
0
0
79
0.73
10931877--10931916
14
2.8
15
85
11
57
55
0
0
45
0.99
10932009--10932041
2
17.0
2
87
6
50
51
3
0
45
1.16
10933386--10933425
2
20.0
2
89
0
62
55
0
0
45
0.99
10933386--10933425
12
3.3
12
96
0
71
55
0
0
45
0.99
10940873--10940904
2
16.5
2
93
6
57
50
0
0
50
1.00
10941143--10941190
19
2.6
18
77
9
51
56
0
0
43
0.99
10943872--10943915
2
22.5
2
90
4
72
50
2
0
47
1.13
10949684--10949810
66
1.9
66
93
3
220
47
12
13
26
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335