Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  163  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48008841--48008914
31
2.4
31
93
0
121
28
29
14
27
1.95
48008938--48009029
42
2.2
42
92
0
148
34
19
14
31
1.91
48009162--48009297
26
5.3
26
84
3
172
26
22
22
28
1.99
48009162--48009297
52
2.7
50
88
7
204
26
22
22
28
1.99
48009347--48009433
20
4.3
20
92
2
140
31
18
10
40
1.84
48010143--48010217
27
2.8
27
76
15
75
21
18
21
38
1.93
48010258--48010487
27
8.4
27
80
5
158
31
7
20
40
1.81
48010348--48010487
54
2.6
54
82
3
174
30
6
22
41
1.78
48010466--48010622
27
5.8
27
86
0
215
39
6
22
31
1.79
48010440--48010613
54
3.2
54
85
1
170
39
5
20
33
1.77
48010413--48010613
81
2.5
81
83
0
195
38
5
20
34
1.77
48010495--48010642
54
2.7
54
86
0
152
38
8
20
32
1.82
48010476--48010649
81
2.1
81
86
2
206
39
8
22
29
1.83
48017953--48018025
28
2.6
28
77
14
78
30
17
31
20
1.96
48021225--48021313
37
2.4
37
96
1
160
25
33
17
22
1.96
48021353--48021552
48
4.2
48
94
0
346
32
28
6
33
1.83
48021544--48021881
47
7.1
47
94
1
595
28
28
7
34
1.85
48026053--48026220
40
4.2
40
81
6
196
25
21
27
25
1.99
48033992--48034157
39
4.2
40
79
7
178
25
21
27
25
1.99
48033992--48034157
79
2.1
79
82
2
199
25
21
27
25
1.99
48035856--48035883
2
14.0
2
100
0
56
50
0
0
50
1.00
48035928--48036016
44
2.0
44
95
0
160
46
22
4
26
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48043022--48043200
40
4.5
39
80
5
110
23
26
24
25
2.00
48043057--48043200
40
3.6
40
85
5
193
22
26
25
25
2.00
48047591--48047748
27
5.9
27
81
11
173
34
20
24
20
1.97
48047609--48047748
54
2.6
54
93
2
237
34
22
24
19
1.96
48049916--48050090
46
3.8
46
73
17
173
29
28
19
22
1.98
48051865--48051969
27
3.9
27
82
9
124
37
20
24
18
1.94
48054490--48054514
3
8.3
3
100
0
50
0
36
0
64
0.94
48056730--48056855
27
4.7
27
87
2
164
30
19
7
42
1.80
48056697--48056855
54
2.9
54
82
3
133
31
22
8
38
1.83
48056832--48057067
27
8.8
27
74
9
160
39
21
8
30
1.83
48056758--48056882
54
2.3
54
80
2
144
35
18
7
39
1.78
48056846--48057051
80
2.5
82
80
3
213
40
21
8
28
1.83
48056805--48057141
27
12.4
27
75
7
139
38
19
8
33
1.82
48057182--48057259
27
2.9
27
77
11
88
35
21
20
21
1.96
48058065--48058158
25
3.8
25
88
1
136
26
23
24
25
2.00
48058065--48058171
25
4.4
24
84
5
126
28
21
24
25
1.99
48058378--48058455
31
2.5
31
95
0
138
26
19
25
28
1.99
48061033--48061143
42
2.6
42
80
2
134
33
24
11
30
1.91
48062204--48062229
13
2.0
13
100
0
52
46
15
0
38
1.46
48067369--48067463
43
2.2
43
81
9
104
30
20
22
27
1.98
48071948--48071977
15
2.1
15
93
6
53
30
6
26
36
1.82
48073705--48073752
24
2.0
24
83
0
60
22
20
29
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48078630--48078753
40
3.1
40
79
6
119
27
24
27
20
1.99
48088632--48088749
41
3.1
41
60
28
98
32
17
28
21
1.96
48088600--48088763
71
2.3
71
100
0
328
35
17
28
18
1.94
48096207--48096324
41
3.1
41
60
28
98
32
17
28
21
1.96
48096175--48096338
71
2.3
71
100
0
328
35
17
28
18
1.94
48108820--48108934
44
2.7
43
76
14
128
26
19
27
26
1.99
48117828--48117877
24
2.1
24
96
0
91
40
12
18
30
1.86
48121563--48121596
17
2.0
17
100
0
68
47
23
0
29
1.52
48122535--48122584
15
3.4
15
80
5
57
40
0
12
48
1.40
48122542--48122588
15
3.2
15
81
6
60
36
0
8
55
1.31
48123596--48123622
9
3.0
9
100
0
54
55
22
0
22
1.44
48127660--48127692
16
2.0
17
88
5
50
39
15
6
39
1.72
48130322--48130494
93
1.9
93
96
0
319
27
30
21
20
1.98
48130315--48130490
46
3.8
46
79
12
216
28
29
21
20
1.98
48138214--48138283
27
2.5
28
95
2
124
28
14
27
30
1.95
48138214--48138295
27
3.0
27
85
8
78
29
15
24
30
1.96
48139752--48139836
27
3.1
27
91
0
125
30
23
7
38
1.81
48139761--48140003
27
8.9
27
82
4
148
34
20
8
35
1.84
48139829--48139929
28
3.6
28
93
4
161
40
20
7
30
1.81
48139829--48139957
28
4.6
28
86
7
138
41
20
7
31
1.80
48139815--48140250
27
16.2
28
73
11
182
36
20
9
32
1.85
48141122--48141270
52
2.9
52
95
2
266
26
23
22
26
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48141122--48141270
26
5.8
26
92
0
239
26
23
22
26
2.00
48141415--48141506
42
2.2
42
88
0
130
29
14
21
34
1.93
48141530--48141608
31
2.5
31
91
0
131
31
17
22
27
1.97
48144848--48145003
43
3.7
41
75
11
129
29
30
16
23
1.96
48150975--48151037
30
2.1
30
82
11
76
31
30
1
36
1.67
48154974--48155081
27
4.0
27
84
7
103
29
14
19
36
1.92
48155006--48155238
54
4.3
54
82
5
267
30
9
20
39
1.85
48155006--48155218
27
7.9
26
81
8
207
30
10
19
38
1.85
48155555--48155615
28
2.2
28
87
0
86
26
37
16
19
1.93
48157952--48157977
11
2.4
11
100
0
52
53
19
0
26
1.45
48158435--48158506
27
2.7
27
84
4
83
25
15
20
38
1.92
48158465--48158526
27
2.3
27
82
0
79
32
9
14
43
1.78
48158517--48158631
27
4.3
27
82
4
133
29
11
20
39
1.87
48158597--48158669
37
2.0
37
89
5
112
31
8
15
45
1.75
48158967--48159101
27
4.9
28
89
2
193
26
36
14
22
1.93
48158967--48159101
55
2.4
56
87
4
193
26
36
14
22
1.93
48164042--48164078
17
2.2
17
90
0
56
18
0
35
45
1.50
48170271--48170314
19
2.4
19
85
7
56
50
0
9
40
1.34
48172099--48172166
27
2.5
28
90
7
113
44
26
10
19
1.82
48174535--48174578
19
2.4
19
85
7
56
50
0
9
40
1.34
48176367--48176435
28
2.5
28
95
2
122
43
27
10
18
1.82
48179696--48179758
30
2.1
31
82
8
76
22
30
17
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48197427--48197464
20
1.9
20
88
0
58
36
31
13
18
1.89
48206557--48206781
119
1.9
120
83
6
296
28
27
20
24
1.99
48206557--48206781
40
5.7
40
88
4
296
28
27
20
24
1.99
48207376--48207465
38
2.4
38
100
0
180
34
28
12
24
1.91
48214749--48214974
40
5.7
40
87
4
287
28
26
19
25
1.99
48215570--48215697
38
3.4
38
98
0
247
34
28
11
25
1.91
48218288--48218350
33
1.9
33
90
0
99
26
26
23
22
2.00
48237875--48237932
27
2.2
26
84
9
73
51
13
5
29
1.63
48239011--48239070
28
2.2
28
82
8
70
30
18
21
30
1.97
48240295--48240347
26
2.0
26
92
0
88
62
0
28
9
1.26
48247584--48247651
30
2.3
30
100
0
136
47
20
13
19
1.82
48248779--48248841
30
2.1
30
93
0
108
25
3
14
57
1.52
48252012--48252049
2
19.5
2
94
5
69
50
0
0
50
1.00
48252640--48252686
23
2.0
23
100
0
94
17
31
0
51
1.46
48257173--48257232
24
2.5
24
83
5
68
28
3
6
61
1.37
48259727--48259774
6
7.7
6
81
9
60
31
10
0
58
1.32
48259726--48259774
12
3.9
12
91
5
71
30
10
0
59
1.31
48259701--48259768
32
2.1
32
84
10
86
33
5
0
60
1.21
48259876--48259910
3
11.7
3
87
0
52
31
2
0
65
1.07
48260068--48260115
24
2.1
22
84
7
60
22
10
10
56
1.63
48262361--48262413
3
17.7
3
80
0
61
30
7
1
60
1.35
48262337--48262413
21
3.7
21
81
10
86
33
6
1
58
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48262361--48262413
15
3.5
15
86
0
70
30
7
1
60
1.35
48262515--48262549
3
11.7
3
87
0
52
31
5
0
62
1.18
48262706--48262753
24
2.1
22
84
7
60
22
10
10
56
1.63
48266540--48266747
40
5.2
40
87
4
278
28
28
19
23
1.98
48276044--48276168
40
3.2
40
89
5
191
28
28
21
21
1.99
48280164--48280312
80
1.9
80
81
2
183
22
30
24
22
1.99
48280205--48280312
40
2.7
38
85
8
128
21
29
25
23
1.99
48282859--48282995
40
3.5
40
86
3
188
26
28
22
22
1.99
48291092--48291210
40
3.0
40
79
10
145
28
26
21
22
1.99
48295502--48295726
40
5.6
40
87
7
314
26
28
22
23
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335