genome.fa.s5.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  109  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33844677--33844786	17	6.0	17	70	24	73	66	0	15	18	1.26
33844667--33844812	38	3.9	38	95	0	249	64	0	15	19	1.29
33844689--33845018	21	15.8	20	69	21	157	61	0	14	23	1.36
33844655--33845014	18	19.6	18	69	24	127	61	0	14	24	1.35
33844808--33845013	28	7.2	29	72	16	119	58	0	13	27	1.39
33844902--33844991	5	17.2	5	75	19	69	56	1	15	26	1.46
33844925--33844979	17	3.6	16	72	27	57	54	0	18	27	1.44
33844925--33844992	23	3.0	22	81	14	68	52	1	17	27	1.53
33845237--33845306	23	3.1	22	80	12	72	65	0	10	24	1.23
33845258--33845325	21	3.0	22	78	10	75	69	0	7	23	1.14
33845338--33845568	17	14.0	17	68	21	75	59	2	13	24	1.47
33845346--33845420	28	2.6	28	82	2	96	57	0	14	28	1.38
33845377--33845420	23	1.9	23	86	9	63	59	0	13	27	1.35
33845506--33845568	18	3.6	17	81	14	83	55	3	15	25	1.55
33845542--33845607	28	2.3	28	81	5	78	59	0	12	28	1.33
33845534--33845910	23	17.5	22	70	18	138	59	3	13	23	1.49
33845506--33845584	35	2.3	35	80	14	92	54	2	15	27	1.54
33845553--33845590	17	2.2	17	86	9	51	57	0	13	28	1.36
33845670--33845721	27	2.0	26	88	7	79	61	1	15	21	1.43
33845685--33845788	5	19.2	5	70	20	59	53	0	19	25	1.51
33845679--33845788	11	9.4	12	65	23	56	53	0	19	26	1.51
33845662--33845726	27	2.4	29	78	19	77	60	1	16	21	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33845779--33845900	38	3.2	36	76	16	120	63	4	10	21	1.42
33845831--33845892	21	2.9	21	85	7	81	67	3	9	19	1.33
33845655--33845936	17	15.9	17	67	24	60	58	2	14	24	1.48
33845402--33845893	23	23.2	20	67	20	129	60	3	13	22	1.46
33845896--33846062	5	29.6	5	68	20	64	56	1	16	25	1.49
33845902--33846062	28	5.6	28	76	13	79	57	1	16	25	1.47
33845870--33846062	17	12.2	17	68	19	91	58	1	15	25	1.46
33850270--33850308	18	2.2	17	86	13	53	15	2	5	76	1.06
33852432--33852717	136	2.1	137	96	0	520	32	25	17	24	1.97
33854501--33854610	26	4.2	26	91	0	175	36	23	5	34	1.78
33854501--33854610	52	2.1	52	98	0	211	36	23	5	34	1.78
33855112--33855180	27	2.6	27	97	0	129	27	23	17	31	1.97
33862130--33862196	29	2.3	30	76	10	75	50	5	10	32	1.61
33867042--33867147	48	2.2	49	96	3	196	29	21	6	42	1.78
33868497--33868765	147	1.8	148	88	4	411	42	5	9	42	1.60
33885757--33885803	3	15.3	3	78	12	51	63	0	6	29	1.19
33885752--33885803	18	2.7	19	82	14	63	65	0	5	28	1.16
33885861--33885906	12	4.0	11	83	8	56	69	0	2	28	1.00
33887249--33887349	44	2.3	44	82	3	123	24	23	20	30	1.99
33887526--33887728	44	4.6	43	73	9	158	28	21	20	30	1.98
33887475--33887635	45	3.6	45	74	8	148	27	23	18	29	1.98
33887470--33887635	89	1.9	89	81	0	206	27	23	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33887475--33887731	133	1.9	134	83	0	336	28	22	19	29	1.98
33898371--33898421	24	2.1	24	81	0	57	41	1	39	17	1.61
33901327--33901376	18	2.8	18	81	0	64	30	18	10	42	1.82
33902275--33902624	46	8.0	46	84	10	446	22	24	15	38	1.93
33902275--33902624	84	4.0	88	90	4	455	22	24	15	38	1.93
33902454--33902613	38	4.0	38	85	12	230	23	25	17	34	1.96
33907648--33907997	46	8.0	46	83	10	428	22	24	15	37	1.93
33907648--33907997	84	4.0	88	89	4	437	22	24	15	37	1.93
33907827--33907986	38	4.0	38	84	12	221	23	25	16	34	1.96
33910911--33910956	3	15.3	3	100	0	92	67	0	0	32	0.91
33911615--33911655	22	1.9	21	85	5	55	2	19	7	70	1.22
33916677--33916727	18	2.8	18	78	0	66	29	13	9	47	1.75
33917287--33917321	3	11.7	3	93	0	61	65	2	0	31	1.07
33917980--33918020	22	1.9	21	85	5	55	2	19	7	70	1.22
33918063--33918114	22	2.3	22	83	9	61	32	7	5	53	1.53
33922831--33922980	41	3.7	41	84	1	203	20	23	27	28	1.99
33926158--33926197	22	2.0	21	85	14	57	0	20	12	67	1.22
33929197--33929246	10	5.0	10	79	16	59	58	0	2	40	1.10
33929197--33929246	20	2.5	20	83	6	66	58	0	2	40	1.10
33933922--33934020	50	2.0	50	95	0	180	51	7	10	31	1.62
33935917--33935989	3	24.3	3	100	0	146	67	0	0	32	0.91
33938114--33938154	17	2.4	17	100	0	82	7	9	46	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33939388--33939482	43	2.2	45	84	3	122	31	23	12	32	1.92
33939134--33940237	177	6.2	177	81	3	1098	27	24	17	30	1.97
33940347--33940668	129	2.5	129	94	0	547	38	14	17	29	1.89
33940347--33940668	64	5.0	64	88	1	473	38	14	17	29	1.89
33942374--33942430	28	2.0	28	83	10	71	5	12	5	77	1.11
33946969--33947017	24	2.0	25	88	8	73	63	12	10	14	1.53
33950337--33950821	90	5.4	90	76	7	511	28	21	17	31	1.97
33950337--33951090	44	17.0	43	72	13	281	28	22	17	31	1.97
33950338--33951090	134	5.6	132	74	10	476	28	22	17	31	1.97
33950298--33951090	179	4.4	178	83	4	843	28	22	17	31	1.97
33954748--33954773	13	2.0	13	100	0	52	46	7	23	23	1.78
33955843--33955887	19	2.3	20	88	7	67	42	13	22	22	1.88
33957785--33957849	3	21.3	3	96	3	121	67	0	0	32	0.91
33959459--33959559	9	11.4	9	82	3	98	39	25	8	25	1.85
33959556--33959688	17	7.3	18	64	15	67	48	12	6	33	1.66
33959568--33959702	17	7.4	17	63	14	63	50	12	5	31	1.62
33959558--33959707	37	4.1	37	91	0	246	48	13	5	33	1.65
33977627--33977769	69	2.1	69	100	0	286	39	16	18	25	1.92
33979526--33979565	15	2.7	15	85	11	55	40	5	0	55	1.22
33979526--33979569	16	2.8	16	86	10	56	40	6	0	52	1.28
33983050--33983081	11	2.9	11	90	0	55	40	18	0	40	1.51
33983090--33983121	15	2.1	15	94	0	55	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33983216--33983327	48	2.3	47	83	11	138	36	10	4	48	1.58
33983222--33983349	48	2.7	45	80	14	132	32	11	5	50	1.61
33985313--33985355	16	2.8	16	86	6	54	69	4	0	25	1.07
33985617--33985746	20	7.0	18	67	25	60	56	2	6	34	1.37
33985689--33985728	10	3.8	10	83	9	53	60	0	2	37	1.11
33985658--33985726	25	2.8	25	82	10	88	56	0	5	37	1.23
33991241--33991622	126	3.0	126	91	0	602	28	20	17	34	1.94
33991868--33991936	20	3.5	20	70	20	65	46	23	0	30	1.53
33992048--33992098	23	2.3	22	82	3	66	43	33	0	23	1.54
33996630--33996699	35	2.0	35	100	0	140	34	34	11	20	1.88
33997631--33997678	2	24.0	2	95	0	87	47	0	0	52	1.00
34005221--34005260	18	2.2	19	86	8	57	10	22	47	20	1.79
34005720--34005789	34	2.0	35	86	2	97	32	20	22	24	1.97
34009872--34009923	24	2.2	24	85	0	68	53	9	3	32	1.51
34016834--34016997	71	2.3	71	100	0	328	18	28	17	35	1.94
34016834--34017031	71	2.8	70	91	3	258	20	28	17	33	1.95
34024382--34024545	71	2.3	71	100	0	328	18	28	17	35	1.94
34024382--34024579	71	2.8	70	91	3	258	20	28	17	33	1.95
34027331--34027528	46	4.3	48	75	9	139	24	29	19	25	1.98
34031634--34031685	24	2.2	24	82	0	59	51	9	3	34	1.53
34032136--34032249	20	5.8	19	71	11	68	18	20	8	52	1.71
34032187--34032243	19	3.0	18	78	12	60	17	22	10	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34032252--34032334	20	4.2	19	77	11	78	22	15	1	60	1.42
34032285--34032335	21	2.5	20	75	15	50	23	13	0	62	1.31
34032252--34032334	39	2.1	40	84	6	107	22	15	1	60	1.42
34032984--34033040	10	5.5	10	76	4	51	73	8	5	12	1.23
34032982--34033040	21	2.9	19	76	16	57	71	8	5	15	1.28
34043956--34044159	40	5.1	40	93	2	313	25	28	23	21	1.99
34048435--34048484	2	25.0	2	100	0	100	50	0	0	50	1.00
34050520--34050725	44	4.5	45	74	11	141	26	23	21	28	1.99
34050603--34050749	44	3.3	43	74	1	123	25	25	20	28	1.99
34050744--34051256	88	5.9	87	86	3	658	25	23	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335