Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  12  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4201150--4201184
16
2.2
16
89
0
52
37
2
0
60
1.12
4215575--4215646
28
2.6
28
77
4
83
47
0
1
51
1.09
4215636--4215671
17
2.2
16
90
5
54
47
0
0
52
1.00
4217514--4217604
47
1.9
47
100
0
182
45
16
13
25
1.83
4222413--4222442
15
2.0
15
100
0
60
40
26
6
26
1.81
4227298--4227325
1
28.0
1
100
0
56
0
0
0
100
0.00
4235727--4235759
5
6.6
5
100
0
66
0
18
0
81
0.68
4239210--4239245
18
2.0
18
100
0
72
55
27
0
16
1.42
4241842--4241869
13
2.2
13
100
0
56
57
7
0
35
1.26
4247249--4247280
16
1.9
17
93
6
57
59
0
0
40
0.97
4258380--4258448
31
2.2
31
97
0
129
30
13
14
42
1.84
4265661--4266204
270
2.0
270
96
0
1009
32
13
19
34
1.91
4268495--4268524
14
2.1
14
93
0
51
10
10
6
73
1.25
4270603--4270641
20
2.1
19
86
13
55
30
0
0
69
0.89
4271923--4272037
44
2.6
44
85
2
149
35
13
22
27
1.92
4271923--4272056
46
3.0
45
82
4
153
35
14
23
26
1.93
4281153--4281319
35
4.6
35
85
7
201
33
24
10
31
1.90
4281148--4281319
75
2.4
73
84
8
226
33
23
11
31
1.90
4288643--4288809
35
4.6
35
85
7
201
33
24
10
31
1.90
4288638--4288809
75
2.4
73
84
8
226
33
23
11
31
1.90
4290600--4290714
44
2.6
44
85
2
149
35
13
22
27
1.92
4290600--4290733
46
3.0
45
82
4
153
35
14
23
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4291972--4292024
27
2.0
27
96
0
97
16
33
32
16
1.92
4294274--4294341
3
22.3
3
87
3
91
0
35
0
64
0.94
4297478--4297529
26
2.0
25
85
3
68
65
3
3
26
1.27
4306016--4306066
21
2.4
21
87
6
59
58
0
0
41
0.98
4306022--4306076
21
2.7
21
88
8
78
54
0
0
45
0.99
4306023--4306093
27
2.7
27
79
14
85
53
1
0
45
1.09
4306231--4306271
7
5.9
7
82
0
55
82
4
9
2
0.89
4306230--4306276
14
3.5
13
77
8
51
82
6
8
2
0.90
4317925--4317972
4
11.0
4
86
10
60
50
0
2
47
1.12
4317925--4317972
9
5.4
9
87
9
64
50
0
2
47
1.12
4320738--4320776
15
2.4
16
87
8
53
35
0
0
64
0.94
4324919--4324958
17
2.3
18
86
4
55
7
32
0
60
1.25
4333614--4333674
31
2.0
31
87
6
88
54
11
13
21
1.70
4341087--4341112
2
13.0
2
100
0
52
50
0
0
50
1.00
4345794--4345819
2
13.0
2
100
0
52
50
0
0
50
1.00
4350217--4350249
16
2.1
16
94
0
57
18
30
24
27
1.98
4360712--4360744
3
11.0
3
100
0
66
66
0
0
33
0.92
4364141--4364169
2
14.5
2
100
0
58
0
48
0
51
1.00
4373464--4373537
32
2.3
32
81
6
87
67
1
2
28
1.12
4373464--4373512
22
2.1
24
85
7
66
69
2
2
26
1.10
4374059--4374179
55
2.2
55
81
8
142
38
9
5
46
1.61
4375469--4375524
28
2.0
28
82
3
67
28
8
10
51
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4377558--4377582
9
2.8
9
100
0
50
20
0
0
80
0.72
4384929--4384971
6
7.0
6
81
2
50
76
0
20
2
0.89
4386014--4386082
27
2.4
29
79
15
81
18
5
36
39
1.75
4390086--4390418
50
6.5
50
91
4
522
35
15
22
26
1.94
4390086--4390418
106
3.3
100
90
5
522
35
15
22
26
1.94
4390398--4390456
31
1.9
31
96
0
109
30
20
23
25
1.98
4390411--4390502
46
2.0
46
89
0
139
26
22
23
27
2.00
4390458--4390526
31
2.2
31
84
0
84
26
20
26
27
1.99
4407889--4407941
25
2.1
25
96
0
97
47
16
9
26
1.77
4407998--4408022
13
1.9
13
100
0
50
0
8
0
92
0.40
4417152--4417339
94
2.0
94
96
0
349
41
12
17
28
1.86
4421852--4421916
27
2.3
28
81
10
78
38
32
7
21
1.82
4422888--4422918
12
2.6
12
94
0
53
0
25
0
74
0.82
4423288--4423318
15
2.1
14
94
5
53
54
6
3
35
1.42
4423305--4423373
21
3.4
20
71
16
70
55
7
1
36
1.37
4427228--4427408
46
3.9
46
80
9
224
28
29
20
20
1.98
4447506--4447549
15
2.9
15
93
0
70
43
18
6
31
1.76
4448426--4448469
18
2.4
18
78
10
54
25
6
0
68
1.14
4464292--4464410
58
2.0
59
95
1
213
47
10
9
32
1.69
4478404--4478491
35
2.4
38
80
14
114
35
11
22
30
1.90
4489827--4489915
35
2.4
38
80
12
114
35
11
22
30
1.89
4498806--4498837
16
2.0
16
100
0
64
25
18
31
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4498952--4499182
95
2.5
93
84
7
292
41
2
16
39
1.61
4500051--4500086
13
2.8
14
84
16
51
27
25
0
47
1.52
4500038--4500078
18
2.2
19
87
12
59
29
24
0
46
1.53
4500201--4500335
39
3.4
38
73
8
101
28
28
20
23
1.99
4500574--4500612
18
2.1
19
90
4
62
48
10
0
41
1.37
4501934--4501986
5
10.0
5
80
11
61
56
1
0
41
1.10
4501933--4501988
12
4.5
12
81
16
69
55
1
0
42
1.10
4506499--4506534
13
2.8
14
84
16
51
27
25
0
47
1.52
4506486--4506526
18
2.2
19
87
12
59
29
24
0
46
1.53
4506648--4506782
39
3.4
38
73
8
101
28
28
20
23
1.99
4507021--4507059
18
2.1
19
90
4
62
48
10
0
41
1.37
4508376--4508420
5
8.4
5
83
11
54
57
2
0
40
1.11
4508375--4508430
12
4.5
12
79
16
60
53
1
1
42
1.21
4508731--4509215
126
3.9
126
90
1
722
33
18
21
26
1.96
4508731--4509204
251
1.9
251
88
1
727
33
18
21
26
1.96
4511451--4511481
15
2.1
15
93
0
53
70
0
6
22
1.09
4511518--4511560
11
4.1
11
82
11
54
46
0
23
30
1.52
4513082--4513141
2
29.5
2
89
3
93
46
48
0
5
1.24
4517701--4517767
34
2.0
34
93
0
116
14
47
19
17
1.82
4518620--4518660
18
2.3
18
84
12
50
14
14
2
68
1.32
4518706--4518763
25
2.3
24
80
13
64
31
3
6
58
1.41
4518781--4518818
19
2.1
19
85
5
51
28
0
7
63
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4521027--4521070
22
2.0
22
82
13
54
34
13
27
25
1.93
4554984--4555445
111
4.1
111
88
3
629
22
27
22
27
1.99
4556681--4556736
1
56.0
1
78
0
58
89
10
0
0
0.49
4561331--4561390
31
2.0
31
83
6
79
58
11
5
25
1.53
4568175--4568207
16
2.1
16
88
11
50
45
6
0
48
1.27
4569634--4569669
14
2.6
14
90
0
54
55
0
2
41
1.14
4576489--4576723
114
2.1
114
94
0
407
29
23
8
38
1.85
4579397--4579433
17
2.2
17
90
0
56
29
13
5
51
1.63
4583194--4583223
14
2.1
14
93
0
51
46
36
0
16
1.47
4584472--4584586
44
2.6
44
85
2
149
35
13
22
27
1.92
4584472--4584605
46
3.0
45
82
4
153
35
14
23
26
1.93
4588593--4588668
31
2.4
31
82
6
91
60
3
0
35
1.15
4588599--4588658
23
2.7
23
71
16
56
63
1
0
35
1.05
4592779--4592939
44
3.5
44
80
11
205
32
13
21
32
1.92
4592786--4592942
51
3.2
49
79
12
189
33
12
21
31
1.91
4594421--4594464
15
3.0
15
83
6
63
54
4
0
40
1.21
4597998--4598032
2
17.5
2
93
0
61
51
2
45
0
1.16
4600035--4600066
12
2.6
13
85
14
50
34
0
0
65
0.93
4601324--4601357
18
1.9
18
88
5
52
47
11
0
41
1.40
4601423--4601470
19
2.5
19
82
0
51
56
4
6
33
1.44
4604404--4604442
8
4.9
8
100
0
78
23
38
12
25
1.90
4605251--4605306
24
2.3
24
84
3
67
25
5
17
51
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4605786--4605820
3
11.7
3
100
0
70
34
0
0
65
0.93
4605914--4605949
3
12.0
3
100
0
72
33
0
0
66
0.92
4606044--4606086
16
2.8
15
86
6
59
30
6
0
62
1.21
4606191--4606222
16
2.0
16
93
0
55
21
21
6
50
1.71
4606234--4606265
13
2.6
13
90
9
50
25
6
3
65
1.31
4606447--4606511
22
3.0
22
79
2
69
20
6
6
67
1.34
4606222--4606466
3
82.3
3
69
13
96
32
8
2
56
1.42
4609214--4609244
16
2.0
16
93
6
55
35
0
0
64
0.94
4616581--4616681
22
4.5
22
77
17
100
11
0
30
56
1.42
4616987--4617069
3
27.3
3
73
20
59
30
3
1
65
1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335