genome.fa.s5.2.7.7.80.10.50.1000.245.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  245  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74464971--74465042	24	3.0	24	81	6	83	29	20	23	26	1.99
74465234--74465297	31	2.1	31	93	0	110	39	14	23	23	1.91
74466758--74466810	26	2.0	26	92	0	88	41	16	13	28	1.86
74468929--74469040	40	2.8	40	89	2	163	27	21	24	26	1.99
74468945--74469097	40	3.8	40	87	5	175	25	19	26	28	1.99
74470461--74470627	40	4.2	41	80	5	164	24	26	22	26	2.00
74471446--74471491	17	2.5	19	74	22	53	34	23	17	23	1.96
74476507--74476673	40	4.2	40	82	2	185	24	26	22	26	2.00
74477496--74477541	17	2.5	19	74	22	53	34	23	17	23	1.96
74481467--74481666	55	3.7	54	83	3	233	23	24	17	35	1.95
74481632--74481814	47	4.0	46	84	6	244	25	24	13	36	1.92
74481819--74481903	44	1.9	44	83	4	109	24	21	14	40	1.90
74484219--74484383	56	2.9	56	89	0	249	28	12	24	34	1.92
74489717--74489970	47	5.5	45	76	9	183	24	27	18	28	1.98
74489764--74489970	94	2.2	92	80	4	209	23	28	19	28	1.99
74491542--74491583	22	2.0	21	86	13	59	28	4	7	59	1.44
74498319--74498354	15	2.4	15	95	0	63	22	25	19	33	1.97
74499913--74499947	16	2.1	16	89	5	52	31	5	5	57	1.46
74502808--74502841	10	3.1	11	87	12	52	26	5	8	58	1.51
74510970--74511017	25	1.9	25	86	0	69	33	25	16	25	1.96
74511061--74511119	20	3.0	20	92	0	100	37	11	20	30	1.89
74511170--74511241	24	3.0	24	83	6	92	27	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74511433--74511526	38	2.4	38	94	1	161	37	17	23	22	1.94
74519236--74519283	25	1.9	25	86	0	69	33	25	16	25	1.96
74519327--74519385	20	3.0	20	92	0	100	37	11	20	30	1.89
74519436--74519530	24	4.0	24	85	10	124	28	21	24	26	1.99
74519437--74519530	47	2.0	49	85	12	133	27	21	24	26	1.99
74524242--74524336	14	7.2	13	70	17	63	41	0	4	54	1.20
74524243--74524336	19	4.9	18	71	15	73	41	0	4	54	1.20
74524242--74524356	39	2.9	39	90	1	176	41	0	3	54	1.17
74524261--74524356	20	4.9	19	70	11	77	42	0	2	55	1.11
74524302--74524362	29	2.1	29	87	6	88	49	0	0	50	1.00
74524561--74524750	9	21.7	9	82	6	212	45	20	0	33	1.55
74527210--74527274	32	2.0	32	100	0	130	30	6	24	38	1.80
74528742--74528794	26	2.0	26	82	7	63	39	20	15	24	1.91
74530367--74530397	12	2.6	12	100	0	62	9	25	51	12	1.70
74535229--74535293	32	2.0	32	100	0	130	30	6	24	38	1.80
74536762--74536814	26	2.0	26	85	7	72	37	22	15	24	1.92
74541853--74542008	43	3.6	42	85	5	197	28	30	17	23	1.97
74541868--74542032	43	3.8	43	84	1	179	27	31	15	24	1.96
74541852--74542033	86	2.1	86	81	4	215	28	30	16	24	1.96
74549440--74549508	28	2.5	28	93	4	115	30	27	14	27	1.95
74557970--74558079	39	2.8	40	81	12	136	22	25	29	22	1.99
74559605--74559671	28	2.6	27	83	13	95	31	26	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74561281--74561457	48	3.9	48	74	15	185	28	25	19	25	1.99
74569719--74569762	22	2.0	22	82	8	54	38	9	18	34	1.82
74569986--74570204	40	5.6	40	86	5	297	25	29	23	22	1.99
74569986--74570204	79	2.8	79	88	4	320	25	29	23	22	1.99
74578397--74578617	40	5.6	40	83	4	270	26	28	22	23	1.99
74592200--74592346	43	3.4	43	79	9	156	25	19	24	30	1.98
74592201--74592326	42	2.9	44	82	10	145	25	19	24	30	1.98
74592245--74592359	43	2.7	42	74	11	108	24	17	27	30	1.97
74594060--74594285	40	5.7	41	86	4	243	27	25	20	26	1.99
74594081--74594278	80	2.5	80	87	1	281	27	24	19	28	1.99
74600624--74600766	24	6.0	24	87	4	200	27	20	20	30	1.98
74600816--74600882	20	3.3	20	89	0	98	32	23	11	31	1.91
74604749--74604800	27	2.0	26	84	3	68	17	26	21	34	1.95
74611826--74611975	67	2.2	67	81	8	171	32	17	28	21	1.96
74611850--74612033	67	2.8	64	77	8	194	29	17	29	22	1.97
74613116--74613144	2	14.5	2	100	0	58	48	0	0	51	1.00
74616282--74616431	67	2.2	67	81	8	171	32	17	28	21	1.96
74616306--74616489	67	2.8	64	77	8	194	29	17	29	22	1.97
74619519--74619583	27	2.4	27	86	0	85	30	20	24	24	1.98
74624328--74624403	40	1.9	40	94	0	134	27	25	21	26	1.99
74624325--74624461	40	3.4	39	80	7	132	27	24	21	27	1.99
74624371--74624477	40	2.7	40	83	2	135	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74625978--74626003	13	2.0	13	100	0	52	61	7	0	30	1.24
74631865--74632032	40	4.2	40	82	1	185	24	26	22	26	2.00
74639858--74640025	40	4.2	40	82	1	185	24	26	22	26	2.00
74643809--74643908	40	2.5	40	81	3	130	28	25	20	27	1.99
74643890--74643965	40	1.9	40	89	5	118	26	25	19	28	1.99
74645468--74645493	13	2.0	13	100	0	52	61	7	0	30	1.24
74651037--74651117	37	2.2	38	88	2	119	22	17	12	48	1.80
74655232--74655307	39	1.9	39	100	0	152	48	10	21	19	1.78
74658329--74658526	39	5.1	39	91	0	308	20	22	30	27	1.98
74659993--74660038	18	2.6	18	96	0	83	30	17	15	36	1.91
74661855--74661880	7	3.7	7	100	0	52	30	0	53	15	1.42
74665729--74665817	32	2.8	32	84	1	99	31	25	14	28	1.95
74666284--74666343	27	2.2	27	96	0	111	20	35	31	13	1.91
74670239--74670356	36	3.1	36	63	19	87	40	3	22	33	1.70
74674692--74674751	23	2.6	23	78	7	68	43	28	1	26	1.65
74682135--74682314	40	4.6	40	82	7	208	24	21	27	26	1.99
74682183--74682337	79	2.0	79	83	7	199	25	21	27	25	1.99
74684943--74685066	39	3.2	39	82	0	149	29	29	19	21	1.98
74694793--74694898	48	2.2	48	93	0	176	33	5	27	33	1.80
74695028--74695105	37	2.1	37	90	2	122	23	20	29	26	1.99
74697202--74697295	39	2.4	39	83	0	116	28	28	18	24	1.98
74697227--74697315	39	2.3	39	90	0	133	31	28	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74704480--74704549	27	2.5	28	95	2	124	28	14	27	30	1.95
74704480--74704561	27	3.0	27	85	8	78	29	15	24	30	1.96
74707649--74707679	16	1.9	16	100	0	62	25	3	25	45	1.69
74712465--74712534	27	2.5	28	90	2	115	28	14	25	31	1.95
74712465--74712546	27	3.0	27	82	8	69	29	15	23	31	1.95
74714318--74714470	39	3.9	39	92	0	234	22	30	21	24	1.99
74724171--74724348	45	4.0	44	87	4	239	34	26	15	23	1.94
74724730--74724760	15	2.1	15	93	0	53	54	25	0	19	1.44
74725275--74725303	14	2.0	15	93	6	51	51	27	0	20	1.47
74725717--74725770	27	2.0	27	100	0	108	11	11	33	44	1.75
74737038--74737085	24	2.0	24	91	0	78	27	14	22	35	1.93
74739541--74739596	27	2.0	28	89	3	87	39	12	12	35	1.81
74741541--74741719	56	3.2	55	91	1	268	27	10	23	37	1.88
74741539--74741762	112	2.0	112	81	3	263	28	12	23	35	1.92
74745218--74745308	37	2.4	37	96	1	164	23	18	32	25	1.97
74761152--74761378	50	4.6	49	78	11	219	30	25	18	25	1.98
74776469--74776658	29	6.6	29	84	3	89	25	31	15	26	1.96
74776528--74776658	58	2.3	58	97	0	244	26	29	14	29	1.95
74776499--74776658	87	1.8	87	87	2	241	26	31	15	27	1.95
74784396--74784554	29	5.5	29	95	0	291	27	28	13	29	1.95
74784374--74784554	87	2.1	87	89	2	274	27	29	14	28	1.95
74791855--74791919	29	2.2	29	94	0	112	30	16	27	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74797369--74797594	122	1.9	122	85	4	314	40	11	19	28	1.86
74798999--74799037	20	2.0	20	89	0	60	38	0	15	46	1.46
74800892--74800958	5	13.2	5	73	9	55	37	8	19	34	1.83
74800900--74800958	10	5.7	10	82	6	73	37	10	20	32	1.86
74800892--74800958	21	3.3	21	87	4	93	37	8	19	34	1.83
74806971--74807009	20	2.0	20	89	0	60	41	2	12	43	1.56
74807512--74807563	26	2.0	26	100	0	104	23	19	15	42	1.89
74808807--74808857	25	2.0	26	81	7	61	35	17	21	25	1.95
74808887--74808932	10	4.6	10	94	5	76	39	10	17	32	1.84
74808887--74808955	21	3.4	20	84	13	88	37	13	17	31	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335