genome.fa.s5.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  213  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63600599--63600735	23	5.8	23	76	10	102	24	20	21	33	1.97
63600598--63600711	46	2.5	45	81	5	122	23	20	21	35	1.96
63600665--63600733	24	2.8	25	84	4	86	27	20	17	34	1.95
63605564--63605774	27	7.8	27	89	0	287	30	22	7	39	1.82
63605726--63605818	27	3.4	27	81	0	96	37	20	5	36	1.76
63605539--63605812	81	3.4	81	80	0	278	32	22	7	37	1.82
63605753--63605836	27	3.1	27	84	0	87	40	17	7	34	1.77
63605855--63606205	27	13.0	27	87	0	488	35	19	20	25	1.96
63606408--63606477	25	2.8	25	93	0	113	27	25	22	24	2.00
63606407--63606502	25	3.9	24	81	9	95	28	23	22	25	2.00
63606408--63606502	50	1.9	50	80	8	113	28	24	23	24	2.00
63611888--63612044	28	5.5	28	73	6	127	29	28	19	22	1.98
63611888--63612048	57	2.8	57	89	0	223	29	28	19	22	1.98
63612076--63612330	40	6.4	40	96	0	456	26	25	21	26	2.00
63613814--63613996	46	4.0	46	94	0	294	24	31	9	34	1.87
63613970--63614345	47	8.1	47	92	2	571	26	29	10	33	1.90
63613970--63614345	187	2.0	186	90	1	583	26	29	10	33	1.90
63618183--63618256	29	2.6	29	86	0	94	27	32	16	24	1.96
63618315--63618604	39	7.4	40	96	2	527	25	27	21	25	1.99
63618315--63618604	79	3.7	80	95	3	527	25	27	21	25	1.99
63620086--63620266	45	4.0	45	92	1	272	24	32	8	34	1.85
63620240--63620617	47	8.1	47	92	2	555	25	29	10	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63620283--63620403	22	5.3	21	67	20	73	26	28	10	33	1.90
63624979--63625031	27	2.0	26	85	3	70	32	24	26	16	1.97
63626734--63626803	25	2.8	25	86	0	95	28	24	21	25	1.99
63626734--63626816	25	3.4	25	79	11	75	31	21	21	25	1.98
63628270--63628513	40	6.1	40	86	2	294	27	26	20	24	1.99
63628482--63628820	123	2.8	123	95	0	597	33	25	11	30	1.91
63634881--63635087	40	5.2	40	87	2	265	29	26	19	24	1.99
63634881--63635121	119	2.0	120	80	4	272	28	25	20	25	1.99
63634881--63635121	40	6.1	39	83	3	232	28	25	20	25	1.99
63635090--63635428	123	2.8	123	95	0	588	33	25	11	30	1.90
63637179--63637204	2	13.0	2	100	0	52	50	0	0	50	1.00
63637237--63637345	54	2.0	54	96	0	200	33	18	13	34	1.90
63639271--63639388	58	2.0	58	98	0	227	25	17	16	40	1.90
63646112--63646249	55	2.5	54	77	3	143	38	19	21	20	1.94
63653075--63653183	37	2.9	37	93	0	173	26	29	19	24	1.98
63653330--63653878	48	11.1	48	89	5	724	31	24	6	37	1.81
63653333--63653871	50	10.9	50	90	4	783	30	25	6	37	1.81
63657298--63657576	40	7.0	40	86	0	369	28	29	20	22	1.98
63657294--63657576	80	3.5	80	89	0	422	28	28	19	22	1.98
63658832--63658912	37	2.2	37	88	0	117	30	29	16	23	1.96
63658782--63659043	131	2.0	131	97	0	497	27	27	17	27	1.98
63658963--63659069	37	2.9	37	94	0	178	27	30	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63659218--63659765	48	11.1	48	88	6	794	31	25	6	36	1.80
63659221--63659765	98	5.5	98	90	5	823	31	25	6	36	1.80
63659218--63659765	202	2.8	194	89	5	832	31	25	6	36	1.80
63663252--63663451	53	3.7	53	77	3	193	38	19	22	20	1.93
63668311--63668435	43	2.9	43	87	0	187	15	24	29	31	1.95
63674737--63674839	38	2.7	38	86	0	125	25	21	23	30	1.99
63674837--63675034	43	4.6	43	96	0	360	10	25	33	30	1.89
63676790--63677014	40	5.7	40	93	1	335	23	28	25	22	1.99
63676757--63677050	80	3.7	80	83	5	346	23	28	24	23	2.00
63679038--63679089	27	1.9	27	84	0	68	34	21	23	21	1.97
63679337--63679386	26	1.9	26	87	0	73	28	22	24	26	1.99
63679589--63679658	25	2.8	25	93	0	113	27	25	22	24	2.00
63679588--63679683	25	3.9	24	81	9	95	28	23	22	25	2.00
63679589--63679683	50	1.9	50	80	8	113	28	24	23	24	2.00
63680919--63681027	54	2.0	54	98	0	209	33	17	13	35	1.89
63683418--63683547	40	3.2	40	77	13	142	24	26	24	23	2.00
63683434--63683585	40	3.8	40	80	5	155	22	26	24	26	2.00
63683434--63683585	80	1.9	80	83	5	200	22	26	24	26	2.00
63684886--63684912	10	2.7	10	100	0	54	7	0	0	92	0.38
63684888--63684927	20	2.1	18	86	9	53	12	2	2	82	0.87
63701349--63701555	53	3.8	53	74	4	191	38	17	23	20	1.93
63706414--63706530	43	2.7	42	81	2	144	14	25	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63709035--63709150	27	4.3	27	85	0	79	35	21	8	34	1.84
63709074--63709338	27	9.8	27	86	0	350	29	20	9	40	1.84
63709290--63709428	27	5.2	27	76	4	93	35	21	10	32	1.87
63709128--63709375	81	3.1	81	83	3	187	31	20	9	38	1.84
63709420--63709576	27	5.8	27	86	1	224	35	16	20	27	1.94
63709420--63709576	55	2.9	54	86	1	224	35	16	20	27	1.94
63709419--63709576	82	1.9	81	93	1	271	35	17	20	27	1.94
63713356--63713461	54	2.0	54	98	0	203	34	16	11	36	1.85
63721338--63721520	41	4.5	41	85	6	223	24	22	27	25	2.00
63721322--63721521	81	2.5	81	83	6	244	23	22	27	26	2.00
63721322--63721547	81	2.8	76	79	12	229	23	21	27	26	1.99
63729697--63729736	19	2.1	19	100	0	80	25	32	15	27	1.95
63734143--63734200	29	2.0	29	100	0	116	31	13	27	27	1.94
63734145--63734207	29	2.2	29	94	0	108	31	17	25	25	1.97
63735701--63735754	24	2.2	24	90	0	81	27	37	3	31	1.75
63738286--63738326	20	2.1	19	86	4	55	21	24	12	41	1.87
63742418--63742624	55	3.9	54	82	7	251	23	24	17	34	1.96
63742603--63742724	47	2.6	47	92	0	208	27	22	13	36	1.91
63745522--63745595	29	2.6	29	93	0	130	25	14	31	28	1.95
63745578--63745692	24	4.8	24	96	0	203	20	17	27	34	1.95
63745578--63745714	48	2.9	48	90	2	150	22	17	26	33	1.96
63745578--63745714	72	1.9	72	86	3	195	22	17	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63748607--63748646	19	2.1	19	86	13	55	77	5	17	0	0.94
63748667--63748709	18	2.4	18	96	0	77	30	18	34	16	1.93
63749495--63749713	46	4.8	46	85	1	296	31	18	23	26	1.97
63749495--63749720	91	2.5	92	85	0	301	33	18	23	25	1.97
63749495--63749753	46	5.6	45	81	5	252	32	18	22	25	1.97
63749495--63749753	91	2.8	92	81	5	258	32	18	22	25	1.97
63750480--63750601	44	2.7	46	81	5	142	31	21	20	27	1.98
63750666--63750859	88	2.2	87	90	2	307	30	25	15	27	1.96
63750666--63750862	44	4.5	43	72	8	155	30	25	15	27	1.96
63754521--63754590	27	2.6	27	93	2	113	30	28	14	27	1.95
63761219--63761284	13	5.1	13	81	7	89	37	22	9	30	1.85
63762963--63762993	4	7.5	4	92	7	53	48	0	0	51	1.00
63762960--63762993	17	2.0	17	94	0	59	50	0	0	50	1.00
63765116--63765179	10	6.5	10	80	10	69	54	0	0	45	0.99
63765068--63765179	49	2.4	48	84	13	144	54	1	0	43	1.10
63766472--63766546	39	1.9	39	86	5	107	32	1	4	62	1.22
63767272--63767297	6	4.3	6	100	0	52	53	0	0	46	1.00
63772645--63772674	16	1.9	15	93	6	51	13	0	0	86	0.57
63774417--63774472	23	2.4	23	93	0	94	25	19	19	35	1.95
63776534--63776584	17	2.8	20	77	20	65	56	0	0	43	0.99
63782833--63782952	45	2.6	46	88	1	170	45	13	20	20	1.85
63784739--63784990	68	3.8	65	77	10	221	30	17	27	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63784784--63784968	66	2.8	65	77	11	164	32	16	27	22	1.96
63787464--63787502	16	2.4	17	83	8	55	17	23	12	46	1.83
63787880--63787923	21	2.1	21	91	0	70	31	9	6	52	1.59
63790569--63790690	44	2.8	44	78	7	142	30	28	16	24	1.96
63792625--63792668	12	3.7	13	80	17	51	59	0	11	29	1.32
63801645--63801706	31	2.0	31	100	0	124	45	22	6	25	1.76
63802186--63802454	46	5.7	46	75	11	201	23	28	18	29	1.97
63802325--63802498	94	1.9	92	84	4	233	22	29	20	28	1.98
63808077--63808114	18	2.1	18	85	9	51	21	0	13	65	1.26
63809752--63810037	141	2.0	141	100	0	572	31	17	13	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335