genome.fa.s5.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  145  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42676712--42676767	29	2.0	29	82	6	71	48	1	0	50	1.11
42676753--42676792	12	3.4	11	86	13	53	57	0	0	42	0.98
42676863--42676900	13	3.0	13	88	7	60	44	0	0	55	0.99
42676996--42677044	21	2.5	20	87	9	73	57	0	0	42	0.99
42677096--42677204	13	8.2	13	70	18	55	77	2	5	14	1.07
42677096--42677161	22	3.0	21	80	14	62	78	3	3	15	0.99
42677147--42677202	19	2.8	20	78	5	69	78	1	8	10	1.03
42677977--42678024	23	2.0	24	84	4	62	31	41	10	16	1.82
42681597--42681812	39	5.5	39	94	1	369	27	28	23	20	1.99
42681805--42681936	39	3.4	39	91	2	194	25	25	18	30	1.98
42681599--42681929	78	4.2	79	84	6	347	27	26	22	23	1.99
42681601--42681936	117	2.9	117	82	7	353	27	27	21	24	1.99
42682600--42682626	2	13.5	2	100	0	54	48	0	0	51	1.00
42684418--42684601	40	4.6	39	75	6	138	26	23	27	22	2.00
42684458--42684646	80	2.4	81	77	4	186	23	24	29	22	1.99
42688538--42688647	42	2.6	42	79	0	121	28	27	12	31	1.93
42702034--42702096	24	2.6	24	94	0	108	34	26	17	20	1.95
42704723--42704853	30	4.5	30	86	8	171	32	13	25	28	1.94
42704723--42704853	58	2.2	58	86	4	174	32	13	25	28	1.94
42708732--42708782	25	2.0	25	100	0	102	45	27	7	19	1.78
42711851--42711918	34	2.0	34	85	5	93	30	22	25	22	1.99
42716395--42716601	71	2.9	71	96	0	369	22	22	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42722358--42722496	21	6.6	21	80	0	170	46	16	21	15	1.84
42722358--42722492	42	3.2	42	89	0	198	45	17	21	16	1.86
42726445--42726479	3	11.7	3	93	0	61	65	2	0	31	1.07
42729501--42729556	27	2.2	25	87	6	76	32	1	0	66	1.03
42729587--42729633	23	2.0	24	84	12	62	31	4	0	63	1.13
42729645--42729716	3	24.0	3	76	20	71	30	1	0	68	0.99
42729645--42729716	21	3.5	20	81	18	85	30	1	0	68	0.99
42729608--42729713	28	3.9	27	77	13	103	31	2	0	65	1.14
42729655--42729713	13	4.1	15	82	12	70	30	0	0	69	0.89
42729645--42729714	7	10.0	7	80	14	74	30	1	0	68	0.98
42729636--42729716	28	2.9	29	83	10	105	32	1	0	66	0.99
42730160--42730206	14	3.1	15	79	17	53	46	0	2	51	1.13
42730581--42730628	20	2.3	21	89	3	71	47	0	4	47	1.21
42730775--42730808	2	17.0	2	100	0	68	50	0	0	50	1.00
42731151--42731194	15	2.8	16	86	6	72	36	0	11	52	1.38
42731652--42731698	23	2.0	22	88	8	67	8	6	38	46	1.60
42732843--42732940	35	2.7	37	87	12	150	37	10	16	35	1.82
42732843--42732933	19	4.9	19	92	8	161	37	10	15	36	1.83
42732843--42732956	19	5.8	22	87	10	96	36	9	15	37	1.81
42735161--42735250	28	3.2	28	90	4	137	32	23	23	21	1.98
42735357--42735421	28	2.3	28	91	0	103	32	7	27	32	1.85
42739930--42739994	29	2.2	29	97	0	121	29	16	27	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42740095--42740119	2	12.5	2	100	0	50	48	0	0	52	1.00
42747414--42747580	40	4.2	40	82	2	185	25	27	21	25	1.99
42747414--42747580	80	2.1	79	83	7	205	25	27	21	25	1.99
42748406--42748451	17	2.5	19	74	22	53	34	23	17	23	1.96
42751115--42751179	29	2.2	29	97	0	121	29	16	27	26	1.97
42751280--42751304	2	12.5	2	100	0	50	48	0	0	52	1.00
42755785--42755848	21	3.3	18	83	14	83	82	0	12	4	0.81
42755795--42755849	25	2.2	25	84	9	69	81	0	10	7	0.86
42756849--42757591	44	16.9	44	76	11	585	29	15	27	28	1.96
42756849--42757372	220	2.4	220	91	0	823	29	15	27	27	1.96
42757069--42757547	176	2.7	175	91	1	780	29	15	27	27	1.96
42756849--42757591	220	3.4	218	84	6	733	29	15	27	28	1.96
42757738--42757922	44	4.2	45	73	9	164	29	16	24	29	1.96
42757643--42757992	134	2.6	133	86	4	470	30	16	23	29	1.96
42757986--42758184	45	4.5	45	83	2	213	33	13	27	26	1.94
42758557--42758594	17	2.5	15	80	19	51	39	10	15	34	1.82
42758536--42758633	35	2.7	37	84	12	132	37	10	15	36	1.81
42758536--42758626	19	4.9	19	88	8	143	37	10	14	37	1.81
42759629--42759689	26	2.3	26	83	13	79	26	3	16	54	1.58
42759639--42759698	26	2.4	25	78	15	70	30	3	15	51	1.59
42771751--42771871	46	2.6	46	96	0	215	22	18	27	32	1.97
42772616--42772675	27	2.3	26	85	2	75	35	21	21	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42772643--42772784	67	2.1	67	86	5	194	30	22	28	19	1.98
42772714--42772765	27	2.0	26	84	3	68	34	21	26	17	1.95
42780044--42780086	21	2.0	21	86	0	59	27	20	27	23	1.99
42780060--42780119	27	2.3	26	94	2	102	35	20	21	23	1.96
42781560--42781626	12	5.6	12	75	7	73	22	34	41	1	1.63
42781744--42781828	33	2.6	33	84	0	116	15	48	11	24	1.78
42782950--42783016	14	4.7	14	85	3	89	37	16	7	38	1.77
42785272--42785324	26	2.0	27	85	7	74	24	15	22	37	1.92
42786804--42786868	32	2.0	32	100	0	130	38	24	6	30	1.80
42791706--42791736	12	2.6	12	100	0	62	12	51	25	9	1.70
42793331--42793380	26	1.9	27	84	8	68	24	16	22	38	1.93
42794843--42794907	32	2.0	32	100	0	130	38	24	6	30	1.80
42799550--42799598	25	2.0	25	91	0	80	22	24	38	14	1.91
42803893--42803931	17	2.3	17	81	0	51	30	12	2	53	1.52
42804355--42804398	21	2.2	20	83	4	52	15	13	9	61	1.56
42808203--42808241	19	2.1	19	85	0	51	33	5	10	51	1.58
42812423--42812453	14	2.2	14	100	0	62	29	6	29	35	1.82
42814028--42814075	25	1.9	25	86	0	69	33	25	16	25	1.96
42814123--42814178	11	5.5	11	71	16	57	35	12	19	32	1.89
42814112--42814178	20	3.3	20	93	0	116	34	11	20	32	1.90
42814228--42814320	45	2.1	45	95	4	170	27	20	21	30	1.98
42814228--42814320	22	4.1	23	95	4	172	27	20	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42822066--42822113	25	1.9	25	86	0	69	33	25	16	25	1.96
42822159--42822214	11	5.5	11	71	16	57	35	12	19	32	1.89
42822148--42822214	20	3.3	20	93	0	116	34	11	20	32	1.90
42822264--42822358	23	4.0	24	84	12	124	29	20	22	28	1.98
42824003--42824339	27	12.5	27	85	1	406	32	21	7	38	1.81
42824305--42824566	27	9.8	27	78	5	115	39	20	13	26	1.90
42824448--42824661	27	8.0	27	88	1	306	35	20	20	23	1.96
42824448--42824662	80	2.7	80	85	4	299	35	20	20	23	1.96
42824449--42824644	107	1.8	107	93	1	338	36	21	19	22	1.95
42825126--42825208	29	2.8	29	80	10	96	28	20	26	24	1.99
42841355--42841417	31	2.0	31	93	0	108	23	23	15	36	1.94
42841630--42841756	25	5.2	24	86	2	157	29	20	18	31	1.96
42841805--42841851	20	2.3	20	96	0	85	34	21	10	34	1.88
42849375--42849437	31	2.0	31	90	0	99	23	22	15	38	1.93
42849621--42849797	25	7.2	25	88	7	222	28	22	18	30	1.97
42849847--42849913	20	3.3	20	91	0	107	31	20	13	34	1.92
42851929--42852023	40	2.4	40	81	0	109	24	17	24	33	1.96
42858970--42859046	28	2.8	28	93	0	136	23	10	33	32	1.89
42861889--42862072	40	4.6	40	78	4	147	22	24	29	23	1.99
42869994--42870177	40	4.6	40	76	4	138	22	23	29	23	1.99
42877450--42877557	25	4.4	25	92	3	157	25	21	25	27	1.99
42877763--42877957	27	7.2	27	89	0	282	26	20	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42877942--42878316	27	13.9	27	79	8	147	32	8	20	38	1.84
42878006--42878310	27	11.2	28	82	6	186	31	9	20	39	1.84
42878023--42878310	54	5.3	54	80	6	296	31	9	20	39	1.83
42877997--42878290	81	3.6	80	84	2	338	31	9	20	39	1.84
42877979--42878310	81	4.1	80	81	5	317	31	9	20	39	1.84
42878697--42878739	21	2.0	21	100	0	86	23	18	16	41	1.89
42879648--42879685	19	2.0	19	100	0	76	31	21	5	42	1.75
42882682--42882739	30	1.9	30	100	0	116	27	32	8	31	1.87
42891432--42891546	20	5.8	20	70	8	81	9	28	22	39	1.86
42894187--42894336	67	2.2	67	81	8	171	32	17	28	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335