Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  152  of  335  ( 40112 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44666902--44667077
97
1.8
96
85
3
246
26
30
15
27
1.96
44666899--44667223
147
2.2
142
83
6
375
23
29
18
28
1.98
44669241--44669282
20
2.0
21
90
4
68
50
0
19
30
1.48
44669963--44670078
33
3.5
33
80
6
110
34
11
21
32
1.89
44671022--44671051
13
2.3
13
94
0
51
20
40
33
6
1.78
44677356--44677674
49
6.6
48
71
16
164
24
28
18
28
1.98
44678407--44678765
180
2.0
178
96
1
655
29
16
15
38
1.90
44683805--44683925
9
13.4
9
69
17
74
62
2
0
34
1.08
44683810--44683899
20
4.7
20
76
15
68
63
3
0
33
1.11
44683805--44683925
32
3.3
35
76
16
97
62
2
0
34
1.08
44683867--44683928
17
3.6
18
80
8
76
64
0
0
35
0.94
44684365--44684406
10
4.1
10
80
17
50
40
2
2
54
1.26
44684353--44684404
21
2.5
21
80
17
56
38
1
3
55
1.29
44684443--44684496
22
2.4
23
78
6
58
61
7
1
29
1.34
44690620--44690667
22
2.2
22
92
0
78
37
29
29
4
1.76
44695131--44695174
17
2.6
17
100
0
88
20
18
36
25
1.95
44697334--44697414
40
2.0
40
82
0
99
41
16
14
27
1.87
44701111--44701151
3
13.7
3
94
0
64
34
4
0
60
1.18
44702539--44702681
35
4.1
35
81
6
164
40
16
20
22
1.91
44702539--44702670
69
1.9
71
85
3
187
40
15
21
22
1.91
44703997--44704031
7
5.3
7
93
6
56
14
71
0
14
1.15
44703997--44704030
6
5.3
6
89
10
50
14
70
0
14
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44703997--44704031
13
2.6
14
86
13
56
14
71
0
14
1.15
44705877--44705922
8
5.6
8
87
5
56
45
0
0
54
0.99
44705883--44705919
2
19.0
2
88
5
58
45
0
0
54
1.00
44706184--44706242
22
2.7
22
89
0
82
38
16
20
23
1.92
44707798--44708044
3
83.0
3
65
15
68
28
7
2
61
1.37
44707953--44707996
17
2.6
17
82
7
54
29
4
4
61
1.36
44707953--44708002
20
2.5
20
83
6
57
28
4
4
64
1.30
44708237--44708261
8
3.1
8
100
0
50
12
0
12
76
1.04
44718520--44718545
3
8.7
3
100
0
52
69
0
0
30
0.89
44722669--44722708
2
20.0
2
100
0
80
50
0
0
50
1.00
44724114--44724215
33
3.1
32
81
4
96
32
10
22
34
1.89
44724121--44724227
32
3.2
32
80
10
117
32
10
23
33
1.88
44730517--44730564
16
3.1
16
80
14
57
45
0
0
54
0.99
44730816--44730858
20
2.1
20
86
4
59
46
2
4
46
1.36
44740418--44740479
32
1.9
32
96
0
115
24
29
27
19
1.98
44752064--44752145
41
2.0
41
95
0
146
39
7
9
43
1.65
44752212--44752261
23
2.2
23
96
0
91
40
4
16
40
1.67
44761102--44761131
1
30.0
1
100
0
60
100
0
0
0
0.00
44763343--44763367
2
12.5
2
100
0
50
48
0
52
0
1.00
44763683--44763714
6
5.3
6
100
0
64
0
0
15
84
0.63
44766127--44766164
18
2.1
19
85
5
51
31
26
7
34
1.85
44767956--44768008
19
2.8
19
85
5
63
73
1
9
15
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44782431--44782465
16
2.2
17
90
10
56
80
0
11
8
0.92
44783811--44783836
2
13.0
2
100
0
52
50
0
0
50
1.00
44784494--44784591
42
2.3
42
94
0
169
20
28
32
18
1.96
44786784--44786822
18
2.2
18
86
9
53
61
0
7
30
1.24
44787532--44787571
2
20.0
2
94
0
71
50
47
0
2
1.14
44787628--44787661
7
4.9
7
100
0
68
58
0
14
26
1.36
44789992--44790160
40
4.2
40
80
4
173
23
26
21
28
1.99
44797191--44797359
40
4.2
40
80
4
173
23
26
21
28
1.99
44800357--44800387
2
15.5
2
100
0
62
51
0
0
48
1.00
44801048--44801084
2
18.5
2
100
0
74
51
0
0
48
1.00
44801915--44802134
43
5.1
42
78
8
187
29
28
16
25
1.97
44801915--44802134
86
2.6
86
87
1
289
29
28
16
25
1.97
44802887--44802917
15
2.1
15
93
0
53
54
25
0
19
1.44
44807372--44807640
48
5.7
47
76
9
192
23
31
18
26
1.98
44807473--44807777
46
6.5
46
74
13
209
22
31
19
26
1.97
44807462--44807778
92
3.4
91
77
11
270
22
31
19
25
1.98
44815297--44815457
46
3.5
46
81
11
156
24
29
18
27
1.98
44815328--44815499
46
3.7
45
79
11
168
23
28
19
29
1.98
44817952--44818029
5
15.6
5
84
5
95
41
24
1
33
1.63
44818558--44818595
20
1.9
19
89
5
58
63
5
28
2
1.30
44825087--44825260
77
2.3
77
91
0
285
33
28
17
21
1.96
44831775--44831808
17
2.0
17
100
0
68
29
29
17
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44844536--44844669
72
1.9
72
87
0
196
25
17
25
32
1.97
44846296--44846346
18
2.7
20
76
17
54
33
0
1
64
1.05
44847841--44847876
18
2.0
18
94
0
63
19
27
11
41
1.85
44847842--44847884
18
2.4
18
88
0
59
18
27
6
46
1.75
44850343--44850411
35
2.0
35
91
0
111
39
27
4
28
1.76
44851648--44851702
28
2.0
28
82
7
67
36
14
3
45
1.63
44851565--44851867
126
2.4
126
91
2
484
29
18
13
37
1.90
44854569--44854593
13
1.9
13
100
0
50
32
4
24
40
1.73
44855536--44855569
2
17.0
2
100
0
68
50
0
0
50
1.00
44855723--44855877
43
3.6
43
79
12
167
24
17
25
32
1.97
44855718--44855877
85
1.9
86
85
8
229
23
17
26
32
1.97
44869230--44869505
18
15.3
18
67
15
88
37
14
11
36
1.83
44869221--44869505
36
7.9
36
66
16
115
37
14
11
36
1.82
44869623--44869712
47
1.9
47
93
0
153
36
22
22
18
1.95
44869630--44869728
47
2.1
47
88
0
144
39
22
20
18
1.92
44869616--44869730
47
2.3
51
72
16
121
40
21
20
17
1.91
44869720--44869830
45
2.5
45
86
2
161
43
18
18
19
1.89
44871354--44871398
19
2.4
18
86
13
65
0
33
0
66
0.92
44878681--44878709
7
4.3
7
91
8
51
72
0
0
27
0.85
44879042--44879094
20
2.7
19
83
13
63
24
5
0
69
1.09
44880170--44880228
19
3.2
18
76
9
57
62
0
1
35
1.05
44880170--44880222
20
2.8
20
77
13
58
60
0
1
37
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44880195--44880231
9
3.8
10
86
13
51
62
0
0
37
0.96
44880189--44880385
19
10.3
18
67
17
64
62
3
5
29
1.32
44880149--44880364
68
3.2
66
77
14
167
63
2
4
29
1.27
44880221--44880281
32
2.0
30
84
12
79
60
6
1
31
1.32
44880189--44880385
10
20.6
9
70
16
64
62
3
5
29
1.32
44880226--44880365
67
2.1
69
81
7
171
62
3
5
27
1.34
44880235--44880383
67
2.2
68
80
7
169
61
3
6
28
1.37
44880576--44880635
19
3.2
19
72
9
59
33
5
5
56
1.42
44880658--44880710
21
2.5
22
78
9
65
28
0
0
71
0.86
44880629--44880689
29
2.1
30
84
9
81
34
1
1
62
1.15
44880813--44881086
91
3.1
87
76
10
275
34
10
16
38
1.83
44880813--44881086
89
3.1
87
75
11
275
34
10
16
38
1.83
44887028--44887140
58
1.9
58
89
0
172
30
17
23
29
1.97
44895229--44895265
18
2.2
18
90
9
60
37
16
0
45
1.47
44895263--44895340
36
2.2
36
88
0
120
37
17
10
34
1.84
44895265--44895329
18
3.6
18
87
0
103
41
15
9
33
1.79
44895497--44895588
44
2.1
44
85
4
123
33
23
20
21
1.97
44896220--44896260
13
3.2
12
86
10
55
0
21
0
78
0.76
44896309--44896361
2
26.5
2
100
0
106
49
0
0
50
1.00
44896309--44896409
16
7.4
13
81
14
59
50
0
1
47
1.12
44896951--44897014
9
7.3
9
78
16
64
54
1
1
42
1.19
44900397--44900451
19
2.9
19
86
0
74
23
18
21
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44906583--44906925
174
2.0
172
90
2
544
30
22
4
42
1.74
44909042--44909075
8
4.2
8
92
0
50
55
11
2
29
1.50
44909042--44909081
16
2.6
16
84
4
55
55
10
2
32
1.47
44913202--44913243
13
2.9
14
80
13
50
47
0
0
52
1.00
44913259--44913308
18
2.6
19
77
22
52
52
2
0
46
1.12
44914283--44914326
16
2.7
16
86
13
63
2
34
0
63
1.07
44915311--44915557
43
5.9
42
81
4
250
29
24
14
31
1.94
44918411--44918541
65
2.0
65
98
0
253
26
19
20
32
1.97
44926362--44926399
18
2.1
18
100
0
76
36
15
5
42
1.70
44933953--44933998
25
1.9
23
86
8
65
56
2
0
41
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335