genome.fa.s5.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  140  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41035392--41035508	20	5.8	20	78	0	90	17	18	22	41	1.91
41038166--41038200	10	3.4	10	92	4	52	74	0	5	20	1.02
41039417--41039469	26	2.0	26	92	0	88	35	9	9	45	1.69
41043523--41043563	21	2.0	21	95	0	73	19	26	21	31	1.97
41046359--41046389	16	1.9	16	93	0	53	29	16	12	41	1.85
41049417--41049482	31	2.1	31	88	0	96	45	13	9	31	1.75
41049574--41049612	16	2.3	17	86	8	53	25	0	2	71	0.98
41050714--41050744	6	5.3	6	96	3	55	48	0	12	38	1.42
41051551--41051580	12	2.5	12	94	0	51	70	6	3	20	1.25
41052360--41052392	16	2.1	16	88	5	50	33	0	3	63	1.10
41057035--41057072	19	2.0	19	89	0	58	10	23	39	26	1.87
41059539--41059779	46	5.1	46	75	12	204	23	27	19	29	1.98
41059598--41059769	94	1.8	92	85	7	240	22	27	19	29	1.98
41064877--41064915	19	2.1	19	95	0	69	33	12	5	48	1.63
41065985--41066246	46	5.6	46	81	10	266	23	30	18	27	1.97
41065962--41066232	94	2.9	91	81	10	318	24	30	18	26	1.97
41086131--41086256	46	2.7	46	96	0	225	29	27	22	20	1.98
41090055--41090122	27	2.5	28	92	2	111	30	13	25	30	1.93
41090055--41090136	27	3.0	27	85	5	76	30	14	23	31	1.94
41094649--41094714	24	2.6	26	85	4	91	24	22	16	36	1.94
41095715--41095761	13	3.5	13	77	16	51	17	19	31	31	1.94
41103156--41103550	109	3.7	107	79	7	464	23	23	17	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41103142--41103558	55	7.9	54	74	11	333	23	23	16	36	1.94
41103165--41103611	209	2.1	209	94	0	779	23	23	16	36	1.94
41105211--41105318	21	5.3	21	78	6	89	12	19	16	50	1.77
41107943--41108033	28	3.2	28	90	4	139	31	23	24	20	1.98
41108142--41108198	27	2.1	27	90	6	89	29	8	28	33	1.87
41109470--41109516	24	2.0	24	95	0	85	21	38	4	36	1.73
41110413--41110444	15	2.1	15	100	0	64	18	34	6	40	1.76
41115777--41115866	27	3.2	28	87	7	130	32	23	23	21	1.98
41115973--41116033	28	2.2	27	91	2	95	31	8	26	34	1.86
41123045--41123135	28	3.2	28	90	4	139	31	23	24	20	1.98
41123241--41123305	28	2.3	28	89	5	96	30	7	27	33	1.85
41123553--41123616	16	4.1	16	93	2	112	4	20	26	48	1.69
41123552--41123615	8	8.0	8	83	13	87	4	21	25	48	1.69
41124606--41124652	24	2.0	24	95	0	85	21	38	4	36	1.73
41131216--41131269	20	2.7	20	94	2	90	14	16	18	50	1.79
41133030--41133076	23	2.0	23	83	4	58	31	4	4	59	1.36
41137108--41137204	49	2.0	49	93	0	167	29	15	9	45	1.77
41141201--41141241	20	2.0	20	100	0	82	39	19	4	36	1.73
41142088--41142238	43	3.6	43	80	8	166	33	24	17	23	1.96
41147768--41147827	29	2.1	29	96	0	111	20	25	18	36	1.94
41148919--41149054	67	2.0	67	98	0	263	29	22	8	39	1.84
41149571--41149615	13	3.3	14	77	22	51	60	0	4	35	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41149666--41149708	20	2.4	19	82	17	56	72	0	27	0	0.85
41151473--41151513	20	2.0	20	95	0	73	21	41	26	9	1.84
41154801--41154877	38	2.0	38	92	0	127	22	12	24	40	1.89
41159821--41159910	28	3.2	27	78	13	94	34	22	23	20	1.97
41159821--41159910	27	3.2	28	77	16	98	34	22	23	20	1.97
41160019--41160080	28	2.2	28	94	0	106	30	8	27	33	1.86
41164200--41164338	60	2.3	60	82	6	165	30	18	24	26	1.98
41173389--41173417	14	2.1	14	100	0	58	58	13	0	27	1.36
41175631--41175664	17	2.0	17	94	0	59	47	11	2	38	1.55
41183790--41183892	29	3.6	28	86	5	134	29	16	26	28	1.97
41195159--41195185	6	4.5	6	100	0	54	14	0	0	85	0.61
41196979--41197019	22	1.9	22	85	5	57	24	4	19	51	1.66
41198129--41198157	13	2.2	13	100	0	58	31	0	13	55	1.39
41201838--41201889	27	2.0	26	84	3	68	34	21	26	17	1.95
41206676--41206737	25	2.5	24	76	10	61	17	4	8	69	1.31
41208441--41208492	24	2.2	24	89	0	77	50	9	3	36	1.54
41211803--41211848	23	2.0	23	100	0	92	21	4	26	47	1.69
41212803--41212976	49	3.5	49	84	7	244	31	27	16	25	1.96
41212803--41212984	99	1.8	99	93	0	319	30	27	16	25	1.97
41213209--41213270	29	2.1	30	84	3	81	38	14	8	38	1.76
41215978--41216006	14	2.1	14	100	0	58	62	13	0	24	1.32
41216020--41216071	24	2.2	24	85	0	68	50	7	0	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41217428--41217480	21	2.5	21	84	6	63	16	1	20	60	1.45
41217510--41217548	13	3.0	13	76	0	51	38	0	0	61	0.96
41218836--41218878	22	2.0	22	85	0	59	55	9	11	23	1.64
41220559--41220602	21	2.2	20	83	4	52	18	9	34	38	1.82
41221812--41221872	14	4.3	14	73	8	52	34	1	21	42	1.63
41222455--41222479	12	2.1	12	100	0	50	84	0	8	8	0.79
41223875--41223902	12	2.3	12	100	0	56	32	14	7	46	1.71
41230548--41230642	42	2.3	42	83	0	136	22	24	30	23	1.99
41240261--41240310	26	1.9	26	91	0	82	34	18	20	28	1.95
41240559--41240588	2	15.0	2	100	0	60	50	0	0	50	1.00
41247531--41247583	11	4.9	11	90	2	81	30	0	47	22	1.52
41251625--41251693	18	3.8	18	86	0	102	34	13	21	30	1.91
41266029--41266062	14	2.4	14	100	0	68	20	5	17	55	1.62
41274769--41274931	39	4.2	39	91	0	263	23	33	20	22	1.97
41283196--41283235	2	20.0	2	100	0	80	50	0	0	50	1.00
41283960--41284022	31	2.0	31	81	6	74	63	3	12	20	1.42
41287322--41287395	29	2.5	29	80	8	78	37	1	6	54	1.36
41287852--41287893	2	21.0	2	100	0	84	50	0	0	50	1.00
41287977--41288006	2	15.0	2	100	0	60	50	0	0	50	1.00
41291921--41291963	21	2.0	21	86	0	59	44	0	0	55	0.99
41292436--41292474	16	2.5	15	84	8	51	43	0	2	53	1.14
41297172--41297238	30	2.2	30	84	5	91	23	31	26	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41298278--41298325	20	2.4	20	85	0	60	37	16	29	16	1.91
41298297--41298336	20	2.0	20	85	5	53	37	15	30	17	1.90
41299198--41299265	35	1.9	35	100	0	136	42	19	14	23	1.88
41303435--41303483	25	2.0	25	84	8	64	57	2	2	38	1.22
41303546--41303585	17	2.3	18	87	12	57	35	0	2	62	1.09
41303552--41303603	24	2.2	24	82	0	59	34	0	1	63	1.06
41304049--41304096	15	3.3	15	80	11	55	72	2	0	25	0.95
41304041--41304075	8	4.4	8	89	10	54	65	0	2	31	1.07
41304057--41304101	21	2.2	20	84	15	56	77	2	0	20	0.87
41304062--41304106	23	2.0	23	87	8	67	75	2	2	20	1.01
41304325--41304359	5	7.4	5	96	3	56	0	14	0	85	0.59
41314798--41315155	178	2.0	177	98	0	689	35	27	10	25	1.89
41321147--41321172	13	2.0	13	100	0	52	23	46	7	23	1.78
41325026--41325067	16	2.6	16	85	7	50	45	0	0	54	0.99
41325052--41325113	24	2.7	23	77	5	72	56	1	0	41	1.09
41325036--41325134	12	7.6	13	66	15	53	51	1	0	47	1.07
41328068--41328172	25	4.2	26	92	4	180	37	25	5	31	1.80
41328068--41328172	51	2.1	50	98	1	201	37	25	5	31	1.80
41335097--41335202	25	4.2	26	91	4	180	37	26	5	30	1.79
41340049--41340123	29	2.5	30	84	4	98	45	10	10	33	1.73
41341946--41342065	63	1.9	60	85	9	161	43	0	3	53	1.17
41342008--41342065	18	3.1	19	78	12	57	44	0	3	51	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41342047--41342083	20	1.9	20	88	5	58	29	0	8	62	1.24
41343729--41343876	44	3.4	44	77	3	154	29	17	22	30	1.97
41345718--41345747	15	2.0	15	93	0	51	36	6	0	56	1.26
41347619--41347658	14	2.8	14	84	3	53	25	0	2	72	0.97
41348013--41348354	142	2.5	141	78	9	303	40	10	16	31	1.83
41352303--41352331	14	2.0	15	93	6	51	89	10	0	0	0.48
41361290--41361372	30	2.7	30	81	15	91	27	7	8	56	1.55
41364604--41364670	25	2.6	25	75	17	66	52	4	4	38	1.42
41364585--41364645	20	3.2	20	72	25	69	47	8	1	42	1.43
41368760--41368942	40	4.6	40	86	4	253	26	28	23	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335