genome.fa.s5.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  158  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46416972--46417570	119	5.0	119	94	0	1038	29	18	17	34	1.94
46416972--46417570	237	2.5	238	94	0	1047	29	18	17	34	1.94
46417556--46417749	44	4.4	44	70	13	139	27	23	15	32	1.95
46418603--46418662	22	2.8	21	82	5	75	3	20	0	76	0.92
46418609--46418658	21	2.4	20	90	6	73	4	14	0	82	0.82
46418613--46418674	13	4.7	13	82	9	81	1	16	0	82	0.75
46418609--46418674	19	3.3	21	81	8	77	3	15	0	81	0.80
46418610--46418674	25	2.8	24	84	13	82	1	15	0	83	0.73
46423128--46423280	39	3.9	39	90	4	236	24	21	30	22	1.99
46423128--46423310	39	4.6	39	86	3	215	24	22	30	22	1.99
46428140--46428264	18	6.9	18	88	5	182	37	13	11	37	1.81
46428140--46428264	35	3.5	36	90	7	184	37	13	11	37	1.81
46428140--46428264	53	2.3	54	94	2	225	37	13	11	37	1.81
46436730--46436773	5	8.6	5	95	5	79	18	0	0	81	0.68
46436906--46436943	5	7.6	5	88	11	60	18	0	0	81	0.69
46436688--46437022	170	1.9	173	90	4	543	22	17	14	46	1.83
46438742--46438797	23	2.4	23	80	13	71	26	1	1	69	1.08
46439712--46439774	30	2.1	30	93	0	108	58	12	1	26	1.43
46442916--46442941	2	13.0	2	100	0	52	50	0	0	50	1.00
46443787--46443825	16	2.4	16	100	0	78	46	7	17	28	1.76
46459179--46459224	11	4.4	11	81	8	51	28	26	0	45	1.54
46459179--46459220	22	1.9	22	90	9	68	26	28	0	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46459178--46459224	20	2.2	21	82	17	62	27	27	0	44	1.55
46459215--46459254	22	1.9	21	85	10	55	25	20	7	47	1.75
46460402--46460447	7	6.6	7	94	0	83	28	0	15	56	1.39
46461038--46461078	18	2.3	18	86	0	55	19	29	7	43	1.78
46461326--46461380	21	2.6	21	85	2	74	27	43	20	9	1.81
46461485--46461858	129	2.9	130	92	2	603	34	4	4	55	1.41
46461720--46461764	17	2.8	17	74	19	51	31	0	0	68	0.89
46469746--46469780	17	2.1	17	100	0	70	17	40	20	22	1.92
46470180--46470330	60	2.5	60	81	1	167	42	3	16	37	1.65
46471558--46471589	16	2.0	16	100	0	64	31	12	25	31	1.92
46478695--46478723	1	29.0	1	100	0	58	100	0	0	0	0.00
46483997--46484145	31	4.8	31	92	0	244	26	20	27	25	1.99
46484167--46484338	49	3.7	47	85	8	205	29	14	26	29	1.95
46484210--46484373	42	3.7	43	83	9	172	30	14	26	28	1.95
46485458--46485494	3	12.3	3	100	0	74	67	0	0	32	0.91
46485497--46485528	3	10.7	3	93	0	55	34	3	0	62	1.11
46494110--46494153	19	2.3	19	88	0	61	43	2	2	52	1.26
46497247--46497276	16	1.9	15	93	6	51	0	13	3	83	0.77
46505683--46505729	20	2.4	19	79	6	58	40	0	6	53	1.27
46516392--46516480	16	5.7	15	69	19	58	70	4	2	22	1.16
46519156--46519186	16	1.9	16	93	0	53	35	22	0	41	1.54
46519153--46519192	20	2.0	20	85	0	53	37	22	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46519383--46519637	55	4.8	53	81	7	236	21	25	17	35	1.95
46519430--46519627	108	1.8	110	90	4	321	22	25	17	34	1.96
46526667--46526691	9	2.8	9	100	0	50	12	0	32	56	1.36
46531939--46532123	40	4.6	39	77	10	162	24	21	27	26	1.99
46531973--46532156	79	2.3	79	77	13	207	26	20	26	26	1.99
46533918--46533972	25	2.3	25	77	20	64	43	1	18	36	1.61
46534410--46534445	17	2.1	17	90	10	56	77	0	22	0	0.76
46535829--46536036	55	3.8	53	81	7	258	34	17	25	22	1.95
46535836--46536036	108	1.8	110	90	4	327	33	17	25	22	1.96
46537837--46537873	3	12.3	3	100	0	74	32	0	0	67	0.91
46538239--46538271	6	5.5	6	96	0	57	18	21	15	45	1.85
46538239--46538277	18	2.2	18	85	0	51	17	25	12	43	1.85
46538415--46538449	18	1.9	18	88	0	52	45	14	17	22	1.84
46541028--46541077	22	2.3	22	89	3	75	16	36	32	16	1.90
46546712--46546917	46	4.5	44	74	15	168	25	29	19	26	1.99
46546712--46546974	138	1.9	137	83	7	345	24	29	19	26	1.99
46555536--46555568	17	1.9	17	93	0	57	36	0	9	54	1.32
46555549--46555573	13	1.9	13	100	0	50	32	0	12	56	1.36
46561033--46561086	6	9.7	6	80	9	53	12	3	0	83	0.78
46561034--46561069	16	2.2	17	90	5	56	13	2	0	83	0.76
46561033--46561086	22	2.5	22	84	3	74	12	3	0	83	0.78
46563916--46563958	22	2.0	22	90	9	70	37	0	11	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46567262--46567426	40	4.2	40	96	0	296	27	27	21	23	1.99
46567958--46567987	2	15.0	2	100	0	60	50	0	0	50	1.00
46570690--46570779	37	2.4	36	90	3	144	24	33	17	24	1.96
46570875--46571089	49	4.4	49	96	0	367	29	32	9	28	1.88
46574123--46574156	16	2.1	17	88	5	52	76	8	0	14	1.01
46584492--46584559	29	2.2	29	78	14	75	35	20	0	44	1.52
46596002--46596059	29	2.0	30	89	3	91	50	0	0	50	1.00
46599148--46599192	17	2.6	18	89	10	76	51	8	8	31	1.64
46606385--46606438	22	2.5	21	77	17	56	27	0	7	64	1.20
46606558--46606618	29	2.1	30	87	9	90	42	0	1	55	1.09
46607785--46607852	33	2.1	33	91	0	109	42	4	0	52	1.21
46607802--46607852	16	3.1	16	70	25	52	45	1	0	52	1.12
46607811--46607868	25	2.2	29	79	17	72	37	3	0	58	1.15
46607795--46607846	16	3.2	16	70	24	54	42	3	0	53	1.19
46611213--46611339	61	2.1	62	81	1	148	35	7	10	47	1.65
46611497--46611537	20	2.0	22	85	9	59	75	0	4	19	0.98
46616879--46616905	3	9.0	3	100	0	54	33	0	0	66	0.92
46619814--46619996	49	3.7	50	75	11	168	24	18	32	25	1.97
46623073--46623257	79	2.3	82	82	7	220	24	24	27	23	2.00
46623074--46623265	40	4.8	40	78	7	142	25	24	27	22	2.00
46627612--46627741	40	3.3	39	83	4	163	23	28	25	23	1.99
46635503--46635721	40	5.5	40	93	2	363	25	28	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46643989--46644167	40	4.5	40	93	2	292	24	29	23	22	1.99
46649069--46649098	16	1.9	15	93	6	51	26	3	0	70	1.03
46649431--46649728	103	2.9	103	95	1	526	29	19	17	33	1.94
46651586--46651623	18	2.0	19	85	10	51	2	13	5	78	1.02
46652342--46652400	3	18.3	3	83	13	57	35	1	3	59	1.24
46652550--46652590	3	13.7	3	100	0	82	31	0	0	68	0.90
46653201--46653265	2	32.5	2	93	0	112	47	1	0	50	1.10
46653255--46653315	26	2.3	26	86	13	81	32	6	3	57	1.41
46659421--46659504	9	9.4	9	72	16	68	64	1	2	32	1.14
46659431--46659518	17	5.0	17	77	10	79	63	1	1	34	1.09
46659407--46659518	35	3.1	35	78	11	111	61	0	1	35	1.13
46659432--46659497	18	3.7	18	81	2	80	65	1	1	31	1.11
46659432--46659516	27	3.1	27	78	6	84	64	1	1	32	1.08
46666953--46666984	15	2.1	16	94	5	57	25	3	18	53	1.59
46668409--46669050	321	2.0	321	90	1	1011	29	25	16	28	1.97
46682828--46683045	108	2.0	108	98	0	418	32	23	16	27	1.96
46684687--46684789	29	3.6	28	80	5	116	29	33	16	21	1.95
46695918--46695970	21	2.5	21	87	6	63	32	3	9	54	1.50
46695930--46695971	21	2.0	21	100	0	84	33	4	4	57	1.41
46701234--46701364	30	4.5	29	83	8	149	27	26	14	31	1.95
46701233--46701364	58	2.3	58	84	4	167	27	27	14	31	1.95
46704221--46704274	20	2.7	20	85	0	81	22	33	27	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46708616--46708906	134	2.1	136	80	3	318	38	12	15	33	1.85
46708938--46709298	134	2.7	134	80	4	415	39	13	15	31	1.85
46717988--46718012	13	1.9	13	100	0	50	24	24	36	16	1.94
46724401--46724477	31	2.5	31	95	2	138	25	27	18	28	1.98
46724501--46724592	42	2.2	42	90	0	139	34	20	14	30	1.92
46724725--46724835	26	4.3	26	86	4	156	27	22	19	29	1.98
46725637--46725720	27	3.1	27	94	3	143	19	27	22	30	1.98
46725782--46726056	27	10.1	27	78	9	139	34	8	18	38	1.80
46725870--46726011	54	2.6	54	82	10	182	31	7	20	40	1.79
46725963--46726185	54	4.1	54	82	0	160	38	6	22	32	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335