genome.fa.s5.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  157  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46083201--46083252	21	2.5	21	79	14	63	36	0	19	44	1.51
46083454--46083486	17	1.9	17	93	0	57	39	21	18	21	1.93
46091918--46091948	16	1.9	16	100	0	62	12	9	6	70	1.31
46093534--46093609	37	2.1	36	83	11	93	42	0	2	55	1.14
46096051--46096158	51	2.1	51	100	0	216	39	11	28	20	1.87
46109654--46109824	93	1.8	93	94	0	306	26	29	22	20	1.98
46109646--46109826	46	3.9	46	80	9	224	27	29	22	20	1.99
46112497--46112560	22	2.9	22	72	9	58	10	20	23	45	1.82
46112773--46112834	27	2.3	27	86	5	81	19	22	24	33	1.97
46122865--46123005	27	5.2	26	83	6	174	17	24	23	35	1.95
46122865--46123005	54	2.6	53	92	2	219	17	24	23	35	1.95
46129753--46129777	13	1.9	13	100	0	50	16	24	16	44	1.86
46132659--46132684	13	2.0	13	100	0	52	15	30	15	38	1.88
46133239--46133277	14	2.8	14	92	0	60	64	12	7	15	1.49
46139131--46139203	36	2.0	36	92	7	121	27	15	10	46	1.79
46140802--46140844	16	2.7	15	89	7	59	41	13	2	41	1.57
46142369--46142418	20	2.5	20	93	0	82	10	26	44	20	1.82
46143446--46143637	93	2.1	94	98	1	377	43	17	9	29	1.81
46147064--46147145	41	2.0	41	95	0	146	30	10	8	50	1.68
46147846--46147894	22	2.2	23	85	3	64	65	4	4	26	1.29
46147938--46148000	30	2.1	30	93	0	108	58	9	4	26	1.49
46150129--46150209	32	2.5	32	90	4	128	27	1	19	51	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46151294--46151381	46	1.9	46	90	0	140	30	10	19	39	1.85
46151300--46151376	24	3.3	24	67	20	63	29	10	20	38	1.86
46151294--46151393	46	2.2	46	87	0	137	31	11	19	39	1.86
46151735--46151780	20	2.3	20	85	10	60	43	15	8	32	1.77
46155409--46155458	25	2.0	25	84	0	64	10	28	4	58	1.49
46157241--46157267	2	13.5	2	100	0	54	48	0	0	51	1.00
46158466--46158505	20	2.0	20	100	0	80	50	0	0	50	1.00
46158588--46158624	19	1.9	19	100	0	74	48	5	10	35	1.61
46158615--46158652	14	2.7	14	91	0	58	34	18	10	36	1.85
46173794--46173903	45	2.4	45	82	5	125	40	16	19	24	1.91
46174116--46174197	40	2.0	40	88	0	119	40	15	9	34	1.81
46175004--46175046	18	2.4	18	96	0	77	51	0	0	48	1.00
46175007--46175044	15	2.5	15	95	0	67	47	0	0	52	1.00
46175297--46175372	3	25.7	3	73	12	59	55	5	0	39	1.23
46175286--46175335	26	1.9	26	87	0	73	48	4	0	48	1.20
46175295--46175354	20	3.0	20	76	9	61	53	5	0	41	1.23
46177933--46177957	13	1.9	13	100	0	50	52	16	8	24	1.70
46183048--46183079	15	2.1	15	94	0	55	21	28	6	43	1.77
46185021--46185109	45	2.0	45	95	0	160	30	5	14	49	1.66
46189066--46189096	16	1.9	16	93	0	53	48	0	0	51	1.00
46189073--46189139	25	2.7	25	67	15	66	52	1	0	46	1.09
46189653--46189880	107	2.1	108	90	2	361	35	17	11	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46190447--46190490	21	2.1	21	82	0	52	34	25	2	38	1.68
46194544--46194568	7	3.6	7	100	0	50	28	0	12	60	1.32
46198406--46198462	30	1.9	30	88	0	87	12	24	35	28	1.91
46200027--46200529	126	4.0	126	86	1	668	27	16	17	38	1.91
46200599--46200665	30	2.2	30	82	10	75	44	19	0	35	1.51
46200633--46200696	34	1.9	34	93	3	112	42	18	0	39	1.51
46200672--46200725	23	2.3	23	84	9	65	40	22	0	37	1.54
46200624--46200780	85	1.9	84	82	9	203	42	21	0	35	1.58
46200685--46200836	32	4.9	31	74	17	136	43	21	0	34	1.58
46200817--46200896	22	3.3	23	80	14	90	42	20	0	37	1.52
46204647--46204738	45	2.0	45	100	0	184	35	10	28	25	1.89
46205764--46205812	20	2.7	18	77	22	57	51	4	2	42	1.32
46206136--46206324	94	2.0	94	95	0	342	34	15	6	43	1.72
46207984--46208103	57	2.1	58	85	1	161	48	5	17	28	1.70
46209598--46209636	17	2.3	16	83	12	51	48	15	0	35	1.45
46215860--46215891	5	6.4	5	100	0	64	40	18	18	21	1.91
46216325--46216370	17	2.8	16	76	23	51	56	6	2	34	1.37
46216630--46216687	29	2.0	30	89	3	91	39	0	39	20	1.53
46219838--46219941	43	2.4	43	96	0	190	22	31	26	19	1.97
46220218--46220259	23	1.9	21	85	9	57	35	30	0	33	1.58
46220712--46220776	21	3.2	21	91	4	98	41	16	26	15	1.88
46223984--46224018	18	1.9	18	88	0	52	45	2	5	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46228576--46228618	23	1.9	22	85	4	59	34	2	4	58	1.32
46229603--46229670	22	3.2	22	68	19	72	63	5	5	25	1.40
46229596--46229676	41	2.0	42	97	2	155	65	6	4	23	1.35
46235813--46235848	17	2.1	17	100	0	72	25	0	52	22	1.47
46237494--46237621	33	3.9	32	72	11	89	25	26	17	30	1.97
46237560--46237829	105	2.6	105	93	1	452	25	22	17	35	1.95
46238927--46239002	38	2.0	38	97	0	143	46	14	2	36	1.59
46241723--46241876	56	2.8	56	86	4	229	31	8	14	44	1.76
46244608--46244825	39	5.6	39	92	2	357	13	25	22	38	1.91
46248687--46248732	24	1.9	24	86	0	65	36	4	10	47	1.58
46250654--46250699	24	1.9	24	90	0	74	36	4	8	50	1.53
46257562--46257589	2	14.0	2	100	0	56	50	0	0	50	1.00
46258324--46258356	5	6.8	5	89	6	50	45	0	0	54	0.99
46258324--46258353	9	3.2	9	95	4	51	46	0	0	53	1.00
46258327--46258356	14	2.1	14	93	0	51	43	0	0	56	0.99
46258324--46258360	19	1.9	19	88	0	56	45	0	2	51	1.15
46268347--46268395	22	2.3	21	82	3	62	26	16	34	22	1.95
46275466--46275494	14	2.0	15	93	6	51	68	3	6	20	1.27
46277274--46277718	94	4.7	93	86	1	568	28	21	18	31	1.97
46277577--46277852	144	1.9	144	88	2	412	27	21	19	31	1.98
46277363--46277943	50	12.2	49	69	18	250	28	22	18	31	1.97
46277484--46277943	238	1.9	238	84	3	622	28	22	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46277692--46277964	94	2.9	94	82	3	298	28	20	19	31	1.97
46280138--46280179	18	2.3	18	100	0	84	30	14	23	30	1.94
46290135--46290200	5	12.6	5	87	6	78	18	0	4	77	0.94
46290147--46290206	28	2.1	28	90	6	95	23	0	1	75	0.90
46298362--46298432	5	13.6	5	91	5	106	19	0	1	78	0.82
46314214--46314344	40	3.3	40	78	2	147	25	23	27	23	2.00
46321026--46321056	16	1.9	16	93	0	53	35	0	0	64	0.94
46321026--46321058	15	2.1	16	88	5	50	36	0	0	63	0.95
46324562--46324647	41	2.1	40	84	2	109	65	10	3	20	1.38
46324628--46324697	33	2.1	33	81	7	79	61	0	8	30	1.26
46328218--46328501	142	2.0	142	97	0	532	37	3	20	38	1.71
46331137--46331263	46	2.7	46	80	7	130	23	30	18	27	1.97
46331232--46331360	47	2.8	46	77	10	136	20	28	20	29	1.98
46337600--46337817	40	5.5	40	86	4	273	22	23	28	25	1.99
46355934--46356049	43	2.7	43	81	7	146	31	28	17	23	1.97
46360113--46360279	40	4.2	40	82	2	185	24	26	22	26	2.00
46368576--46368742	40	4.2	40	82	2	185	24	26	22	26	2.00
46376562--46376729	40	4.2	40	82	1	185	24	26	22	26	2.00
46391788--46391818	12	2.6	12	89	0	53	16	32	32	19	1.94
46392945--46393101	43	3.7	42	82	9	151	34	26	14	24	1.93
46393664--46393717	27	2.0	27	96	0	99	51	16	3	27	1.61
46395146--46395208	30	2.1	30	90	0	99	14	30	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46404302--46404333	15	2.1	15	94	0	55	15	6	9	68	1.36
46406083--46406120	20	1.9	20	100	0	76	42	2	10	44	1.52
46407239--46407302	31	2.0	33	82	8	80	32	6	1	59	1.32
46408855--46408900	2	23.5	2	87	12	69	47	2	0	50	1.13
46409374--46409429	22	2.6	22	86	8	71	53	1	5	39	1.34
46410089--46410125	19	2.1	19	90	10	60	62	2	0	35	1.10
46416186--46416310	18	6.9	18	88	5	182	36	14	10	38	1.80
46416186--46416310	35	3.5	36	89	7	184	36	14	10	38	1.80
46416186--46416310	53	2.3	54	93	2	225	36	14	10	38	1.80
46416696--46417048	83	4.2	83	93	0	589	27	19	20	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335