genome.fa.s5.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  166  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48935028--48935077	24	2.1	24	92	0	82	34	14	6	46	1.69
48935728--48935867	71	2.0	71	97	0	262	25	16	5	52	1.66
48936552--48936588	17	2.2	17	95	0	65	51	0	0	48	1.00
48938945--48938992	22	2.2	22	100	0	96	62	8	4	25	1.41
48942645--48942706	22	2.9	22	85	4	74	9	27	22	40	1.85
48945879--48945950	29	2.5	28	86	4	90	30	31	13	23	1.94
48953882--48953984	29	3.6	27	81	5	98	28	31	16	24	1.96
48970108--48970147	20	2.0	20	85	4	55	45	10	7	37	1.66
48983897--48983927	2	15.5	2	100	0	62	51	0	0	48	1.00
48984004--48984037	13	2.8	12	86	8	50	32	11	0	55	1.36
48984001--48984037	12	3.0	12	84	7	56	32	10	0	56	1.34
48984486--48984557	16	4.5	16	82	0	81	27	25	4	43	1.73
48984488--48984557	32	2.2	32	92	0	113	28	24	4	42	1.73
48988230--48988374	44	3.4	41	78	11	132	31	25	17	25	1.97
48988218--48988374	43	3.7	42	77	13	142	30	26	18	24	1.98
48997351--48997377	14	1.9	14	100	0	54	44	0	22	33	1.53
48998067--48998108	22	1.9	22	85	0	57	47	0	0	52	1.00
48999205--48999254	21	2.4	21	80	9	59	30	20	22	28	1.98
49000489--49000545	28	1.9	30	82	10	73	12	24	7	56	1.61
49002847--49002954	26	4.2	26	92	0	189	33	7	24	35	1.83
49015294--49015339	23	2.0	23	86	0	65	13	23	26	36	1.91
49020633--49020790	43	3.7	43	80	5	167	27	15	24	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49022794--49022847	20	2.7	20	88	0	63	40	12	14	31	1.84
49025300--49025465	40	4.2	40	91	2	255	27	28	21	22	1.99
49026846--49026871	13	2.0	13	100	0	52	61	7	0	30	1.24
49028404--49028467	32	2.0	33	82	14	80	28	6	9	56	1.55
49037914--49037945	3	10.7	3	100	0	64	65	0	0	34	0.93
49038488--49038551	31	2.1	31	93	0	110	42	7	3	46	1.48
49044869--49045729	48	18.0	48	91	0	1395	35	6	26	31	1.81
49045769--49045864	42	2.4	38	84	10	122	25	17	31	26	1.97
49047043--49047259	40	5.3	40	88	6	292	28	19	24	27	1.99
49047455--49047506	25	2.1	25	89	7	79	32	7	28	30	1.85
49050758--49051332	48	12.0	48	93	0	954	35	6	26	31	1.82
49051377--49051499	37	3.3	37	97	0	228	23	18	33	24	1.97
49057074--49057116	19	2.3	19	88	8	61	48	11	9	30	1.71
49058035--49058074	18	2.3	18	91	4	64	17	37	27	17	1.92
49058795--49058879	33	2.6	32	88	7	125	36	29	8	25	1.85
49059700--49059759	28	2.1	28	96	0	111	48	15	10	26	1.76
49061717--49061817	28	3.5	30	82	6	118	29	14	26	28	1.95
49061746--49061821	29	2.7	28	76	13	75	30	14	26	28	1.95
49068847--49068947	28	3.5	30	82	6	118	29	14	26	28	1.95
49068876--49068951	29	2.7	28	76	13	75	30	14	26	28	1.95
49071171--49071333	39	4.2	39	90	0	245	23	20	31	23	1.98
49081872--49081928	28	2.0	28	96	0	105	35	12	12	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49083015--49083047	12	2.8	12	86	13	50	60	0	6	33	1.21
49083847--49083901	24	2.3	24	100	0	110	43	21	10	23	1.84
49084089--49084128	20	2.0	20	95	0	71	37	5	15	42	1.68
49085168--49085274	36	2.9	36	79	16	98	53	3	1	41	1.30
49089705--49089729	8	3.1	8	100	0	50	52	24	24	0	1.48
49098127--49098158	15	2.1	15	94	0	55	68	9	6	15	1.36
49101990--49102058	27	2.6	27	80	0	84	28	11	21	37	1.89
49102421--49102457	18	2.1	18	94	0	65	24	18	10	45	1.81
49104952--49105197	49	4.9	51	81	3	268	26	19	25	29	1.98
49112485--49112710	50	4.6	49	80	7	183	25	17	26	30	1.97
49112485--49112710	99	2.3	98	83	7	262	25	17	26	30	1.97
49133146--49133212	25	2.7	25	75	11	66	20	22	17	38	1.93
49140075--49140216	40	3.5	40	83	1	124	27	23	26	21	1.99
49140113--49140242	40	3.2	40	82	2	163	23	23	27	25	2.00
49153341--49153540	53	3.7	53	78	3	202	37	17	24	20	1.94
49160317--49160449	55	2.4	55	83	1	160	40	19	19	20	1.92
49165117--49165369	43	5.9	42	78	8	233	24	14	22	38	1.91
49165092--49165369	86	3.2	84	76	5	261	24	14	21	38	1.91
49165117--49165368	129	2.0	129	82	6	314	24	14	22	38	1.91
49165259--49165386	43	3.0	43	84	0	112	25	14	21	39	1.91
49165135--49165431	129	2.3	130	79	6	284	25	14	21	38	1.91
49165402--49165503	43	2.4	43	72	0	105	26	20	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49175531--49175587	26	2.2	26	96	3	107	31	22	8	36	1.85
49175836--49175969	59	2.3	59	92	0	223	31	23	14	31	1.94
49177481--49177597	41	2.9	41	75	5	128	37	17	18	25	1.93
49180612--49180638	12	2.2	12	100	0	54	55	7	7	29	1.55
49180687--49180754	4	17.2	4	77	11	52	48	1	1	48	1.19
49180663--49180735	24	2.8	28	74	18	84	50	0	1	47	1.09
49180663--49180795	51	2.6	51	89	2	187	47	2	0	49	1.19
49185348--49185386	16	2.5	15	83	4	51	5	12	5	76	1.11
49187874--49187971	41	2.4	41	89	0	142	31	24	22	21	1.98
49208049--49208086	20	1.9	20	88	0	58	34	2	10	52	1.50
49209710--49209778	28	2.5	28	95	2	122	43	27	10	18	1.82
49217705--49217759	28	2.0	28	96	0	101	45	21	12	20	1.84
49226640--49226849	40	5.2	40	88	2	305	21	28	24	25	1.99
49234759--49234928	40	4.2	40	85	3	225	21	28	24	25	1.99
49236719--49236819	40	2.5	40	80	3	123	34	22	12	29	1.92
49236812--49236854	2	22.0	2	90	4	70	46	0	2	51	1.13
49241522--49241763	43	5.7	41	78	9	146	25	15	19	40	1.90
49241590--49241763	43	4.1	43	82	3	174	27	13	19	39	1.89
49243278--49243548	40	6.8	40	81	5	287	34	25	15	24	1.95
49244742--49244834	43	2.2	43	84	3	116	27	23	13	34	1.93
49244848--49244884	17	2.2	17	95	0	65	32	5	13	48	1.65
49246131--49246194	32	2.0	32	87	3	94	39	1	25	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49247484--49247590	38	2.8	38	88	0	169	30	29	21	17	1.96
49256669--49256696	12	2.3	12	100	0	56	14	7	42	35	1.73
49266648--49266873	50	4.5	49	80	9	233	31	25	18	25	1.97
49266648--49266877	101	2.3	99	84	4	284	30	25	18	25	1.98
49273693--49273872	50	3.6	48	80	5	189	28	24	20	26	1.99
49273686--49273868	101	1.8	101	87	2	278	29	25	19	25	1.98
49276028--49276078	6	7.8	6	79	16	57	78	3	0	17	0.90
49284351--49284376	12	2.2	12	100	0	52	38	7	11	42	1.70
49287288--49287322	18	1.9	18	94	0	61	68	0	8	22	1.16
49291196--49291231	13	2.8	13	100	0	72	55	0	16	27	1.42
49293641--49293887	50	4.9	50	86	2	316	27	17	25	29	1.98
49293641--49293887	100	2.5	100	87	1	352	27	17	25	29	1.98
49294090--49294190	17	6.0	17	95	3	170	52	0	11	35	1.38
49294090--49294185	33	2.9	33	92	6	167	51	0	12	36	1.40
49294092--49294198	33	3.3	31	88	10	135	51	0	11	36	1.44
49294513--49294841	180	1.8	180	87	1	489	38	9	18	33	1.83
49300181--49300340	29	5.5	29	82	4	180	26	16	31	25	1.97
49307243--49307288	15	3.1	15	79	14	51	71	0	10	17	1.13
49313767--49313830	25	2.5	25	80	7	67	20	26	21	31	1.98
49322724--49322945	124	1.8	122	81	5	277	31	11	24	32	1.91
49322941--49323070	40	3.2	40	78	2	145	23	23	27	24	2.00
49322903--49323070	80	2.1	80	81	6	198	26	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49328083--49328168	24	3.6	23	78	7	91	37	23	24	15	1.93
49328208--49328279	26	2.8	26	76	2	83	44	23	16	15	1.86
49336141--49336329	25	7.6	25	69	13	113	19	26	20	34	1.96
49336144--49336290	50	3.0	48	80	14	149	19	25	19	35	1.96
49336145--49336329	49	3.7	50	78	13	170	19	25	20	34	1.96
49336144--49336340	98	2.0	99	79	9	215	19	25	21	33	1.97
49338264--49338423	29	5.5	29	82	4	180	25	31	16	26	1.97
49344513--49344559	12	3.8	12	80	8	51	34	0	2	63	1.06
49344545--49344591	19	2.3	20	82	14	60	34	2	4	59	1.29
49345253--49345296	16	2.6	17	85	10	63	50	0	4	45	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335