genome.fa.s5.2.7.7.80.10.50.1000.320.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 97880472 
Parameters: 2 7 7 80 10 50 1000
Length:  97880472

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   

This is table  320  of  335  ( 40112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94151606--94151891	43	6.8	41	66	22	139	23	21	23	31	1.98
94151655--94151881	43	5.3	43	69	16	166	24	20	22	32	1.98
94152840--94152891	21	2.5	22	84	15	74	3	11	1	82	0.88
94158026--94158208	24	7.6	24	96	0	321	20	18	25	36	1.95
94165747--94165952	24	8.6	24	96	1	360	20	17	25	36	1.94
94169299--94169442	18	7.9	18	89	4	211	36	15	11	36	1.83
94169299--94169442	35	4.0	36	89	8	213	36	15	11	36	1.83
94169299--94169442	53	2.7	54	94	3	254	36	15	11	36	1.83
94170782--94170837	26	2.2	26	100	0	112	30	7	26	35	1.83
94172322--94172374	26	2.0	26	85	7	72	37	22	15	24	1.92
94187586--94187750	32	5.2	32	80	2	181	32	18	14	33	1.91
94187603--94187750	64	2.3	64	90	1	226	31	20	12	35	1.90
94196771--94196853	36	2.4	36	89	4	125	45	14	4	34	1.66
94198852--94198907	27	2.1	27	100	0	112	41	12	28	17	1.86
94204080--94204121	20	2.0	21	90	4	68	38	19	2	40	1.64
94205240--94205349	26	4.2	26	94	2	177	34	4	24	36	1.76
94206969--94207108	27	5.2	27	86	2	174	17	24	22	35	1.96
94206969--94207108	54	2.6	55	87	2	194	17	24	22	35	1.96
94209624--94209719	28	3.5	28	94	4	169	44	26	10	18	1.82
94213933--94214028	27	3.5	28	95	2	169	44	26	10	18	1.82
94218662--94218771	26	4.2	26	94	2	177	34	4	24	36	1.76
94220371--94220482	27	4.2	27	88	1	145	17	22	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94220371--94220482	54	2.1	53	88	1	161	17	22	23	36	1.95
94222537--94222687	43	3.5	42	84	7	196	33	21	16	27	1.95
94225636--94225706	30	2.4	30	83	4	81	26	11	14	47	1.77
94227766--94227790	12	2.1	12	100	0	50	32	28	8	32	1.86
94234962--94235030	28	2.5	28	95	2	122	18	10	27	43	1.82
94236822--94236865	19	2.4	18	85	7	54	40	9	0	50	1.34
94237681--94237730	26	1.9	26	87	0	73	12	22	40	26	1.88
94240361--94240638	49	5.8	49	90	2	402	32	7	30	29	1.85
94244820--94244879	19	3.5	19	65	25	60	36	20	13	30	1.90
94244735--94245019	32	8.9	32	89	0	417	35	21	12	30	1.91
94253711--94253753	18	2.4	18	80	0	50	53	11	0	34	1.37
94254073--94254155	36	2.4	36	91	4	134	45	14	3	36	1.62
94255609--94255666	17	3.4	17	75	0	62	44	13	10	31	1.78
94255617--94255682	34	1.9	34	81	6	80	43	18	7	30	1.77
94256664--94256741	36	2.2	36	88	4	113	44	16	5	33	1.70
94256844--94256910	32	2.1	32	97	0	125	44	31	2	20	1.67
94271146--94271179	16	2.2	15	89	5	50	67	2	0	29	1.05
94271114--94271202	26	3.5	25	72	14	74	64	3	2	30	1.22
94272523--94272575	26	2.0	26	82	7	63	26	15	20	37	1.92
94274062--94274169	26	4.2	26	93	0	180	37	22	7	33	1.82
94277054--94277225	93	1.8	93	96	0	317	27	30	22	20	1.98
94277046--94277221	46	3.8	46	81	10	232	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94279599--94279687	30	3.0	30	80	8	101	57	15	16	10	1.65
94279599--94279678	15	5.4	15	80	7	92	58	13	17	10	1.62
94279610--94279687	15	5.2	15	78	9	79	56	15	16	11	1.67
94282603--94282773	93	1.8	93	96	0	315	27	29	22	20	1.98
94282595--94282775	46	3.9	46	81	9	233	27	29	21	20	1.98
94285968--94286024	26	2.2	26	93	0	96	35	24	5	35	1.78
94289047--94289101	20	2.7	21	72	16	53	38	3	5	52	1.42
94289733--94289806	21	3.5	21	74	7	53	44	31	5	18	1.73
94289774--94289856	35	2.3	36	82	12	91	43	30	1	25	1.62
94289796--94289871	14	5.2	14	69	13	55	40	34	1	23	1.63
94290267--94290309	18	2.4	18	100	0	86	27	11	20	39	1.88
94291884--94292034	43	3.5	43	86	3	205	34	21	16	27	1.95
94294685--94294743	29	2.0	29	83	6	75	50	6	13	28	1.67
94296087--94296128	21	2.0	20	82	13	50	35	23	19	21	1.96
94303037--94303197	29	5.6	29	85	1	198	26	31	16	26	1.96
94308910--94309121	32	6.6	32	80	0	235	31	20	13	33	1.92
94308946--94309121	96	1.8	96	87	0	262	30	20	14	34	1.92
94323566--94323606	2	20.5	2	100	0	82	51	0	0	48	1.00
94324497--94324542	24	1.9	24	95	0	83	13	21	28	36	1.91
94327605--94327646	20	2.0	21	90	4	68	38	19	2	40	1.64
94328767--94328876	26	4.2	26	94	2	177	34	4	24	36	1.76
94330497--94330636	27	5.2	27	87	2	183	17	25	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94330497--94330636	54	2.6	55	89	2	203	17	25	22	34	1.96
94333131--94333176	24	1.9	24	95	0	83	13	21	28	36	1.91
94336243--94336281	20	1.9	21	94	5	71	35	20	7	35	1.81
94338307--94338411	41	2.6	41	84	3	131	40	26	19	14	1.89
94340349--94340396	21	2.3	21	92	0	78	25	16	56	2	1.51
94340695--94340843	43	3.5	43	88	4	230	25	18	23	32	1.97
94340996--94341189	43	4.5	42	82	3	210	30	23	17	28	1.97
94355564--94355657	18	5.3	18	89	6	147	36	10	15	37	1.83
94355564--94355658	35	2.7	35	90	6	147	36	10	15	36	1.82
94361221--94361446	40	5.7	40	90	4	298	24	26	21	27	1.99
94364818--94364857	8	4.9	8	81	6	53	82	0	15	2	0.77
94364817--94364858	17	2.5	17	92	0	75	83	0	14	2	0.75
94365984--94366126	43	3.3	41	69	21	114	32	24	20	22	1.97
94365808--94366177	87	4.4	83	83	9	448	30	24	21	22	1.99
94366310--94367225	207	4.4	207	93	0	1487	30	17	23	29	1.97
94367608--94367670	17	3.5	18	89	6	92	39	9	12	38	1.76
94368644--94368855	32	6.6	32	83	0	262	31	20	13	34	1.91
94379764--94379905	43	3.3	43	94	0	248	27	30	18	23	1.97
94380229--94380262	17	1.9	18	94	5	61	23	29	11	35	1.90
94384465--94384508	18	2.4	18	85	7	54	36	0	40	22	1.54
94385893--94385991	44	2.3	44	82	5	121	36	40	0	23	1.55
94386069--94386153	21	3.9	21	76	11	89	45	25	1	27	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94386053--94386146	46	2.0	46	93	0	161	43	24	2	29	1.66
94386108--94386161	7	7.7	7	78	0	54	50	25	0	24	1.50
94386318--94386517	82	2.4	81	87	3	276	18	24	22	35	1.96
94386318--94386496	41	4.4	41	91	0	270	17	23	22	36	1.95
94386551--94386576	12	2.2	12	100	0	52	46	30	15	7	1.74
94387443--94387482	21	1.9	21	84	0	53	47	0	32	20	1.50
94390802--94390841	20	2.0	20	100	0	80	45	5	10	40	1.60
94401086--94401129	23	2.0	22	81	4	52	52	6	13	27	1.66
94406915--94406984	26	2.8	25	82	6	79	37	20	22	20	1.95
94415502--94415535	16	2.1	16	88	0	50	50	14	17	17	1.79
94418329--94418369	21	2.0	21	90	0	64	29	19	29	21	1.98
94420279--94420312	16	2.1	16	88	0	50	50	14	17	17	1.79
94422006--94422044	17	2.2	18	86	4	53	33	0	5	61	1.18
94424418--94424477	23	2.6	23	89	0	84	20	21	20	38	1.94
94424425--94424539	21	5.3	21	79	7	81	22	23	19	34	1.96
94424705--94424748	12	3.6	12	84	3	52	40	0	29	29	1.57
94427018--94427065	21	2.3	21	88	0	69	43	22	20	12	1.86
94427271--94427313	22	2.0	22	86	9	61	76	0	18	4	0.95
94436193--94436226	14	2.6	13	90	9	52	64	2	0	32	1.08
94438361--94438409	13	3.4	14	79	20	57	34	0	0	65	0.93
94442064--94442122	21	2.8	21	81	0	73	23	38	23	13	1.91
94446195--94446254	30	2.0	30	86	0	84	21	31	28	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94447184--94447238	3	19.0	3	81	10	62	30	1	1	65	1.13
94456114--94456219	21	4.9	23	75	12	82	19	23	21	34	1.96
94456136--94456187	21	2.5	21	87	12	88	23	30	19	26	1.98
94458695--94458742	21	2.3	21	88	0	69	43	22	20	12	1.86
94458922--94458991	26	3.0	22	76	17	61	75	0	15	8	1.03
94465177--94465202	7	3.7	7	100	0	52	15	0	0	84	0.62
94466706--94466755	15	3.4	14	79	17	57	34	0	0	66	0.92
94466932--94467071	2	70.0	2	97	0	262	48	0	51	0	1.00
94468292--94468351	30	2.0	29	81	12	68	56	5	3	35	1.37
94470637--94470698	30	2.1	30	84	0	79	46	0	33	19	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335