genome.fa.s10.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  102  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34150876--34151003	36	3.6	35	77	9	125	25	14	15	43	1.85
34150876--34150987	37	3.1	35	77	7	127	25	15	14	44	1.84
34151043--34151131	35	2.5	35	83	3	117	19	15	17	47	1.83
34150864--34151131	72	3.7	70	73	11	213	24	14	15	45	1.84
34152988--34153145	27	5.9	27	77	15	150	35	20	24	19	1.96
34153006--34153111	27	4.0	27	85	9	155	34	22	25	16	1.95
34153006--34153145	54	2.6	55	86	7	200	35	22	23	18	1.95
34153251--34153324	28	2.8	26	76	12	69	29	9	24	36	1.87
34154768--34154875	26	4.2	26	91	0	180	36	23	7	33	1.83
34156344--34156411	21	3.2	21	81	4	84	14	30	22	32	1.94
34157795--34157833	19	1.9	19	85	10	51	46	5	0	48	1.24
34159820--34159884	22	3.0	21	77	4	69	35	0	3	61	1.12
34159824--34159848	6	4.2	6	100	0	50	32	0	0	68	0.90
34160420--34160452	12	2.8	12	90	0	57	24	18	0	57	1.40
34168850--34168876	5	5.4	5	100	0	54	81	18	0	0	0.69
34168854--34168914	10	6.4	9	80	16	61	75	14	1	8	1.11
34169691--34169851	40	4.0	40	76	4	128	34	18	31	16	1.92
34169687--34169828	20	7.1	20	70	6	72	35	17	30	16	1.93
34169713--34169851	20	6.9	20	72	6	93	33	18	31	15	1.93
34172514--34172567	27	2.0	27	100	0	108	25	3	18	51	1.62
34182243--34182451	53	3.9	53	78	1	220	20	23	17	37	1.94
34188513--34188556	20	2.3	18	80	7	52	27	29	34	9	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34191455--34191748	47	6.1	47	88	4	408	31	11	29	26	1.91
34191455--34191748	147	2.0	141	90	3	462	31	11	29	26	1.91
34191719--34191809	46	2.0	46	86	0	128	32	8	31	26	1.87
34191953--34192134	37	4.9	37	95	0	319	24	18	31	25	1.98
34197470--34197519	21	2.4	21	93	0	82	26	26	14	34	1.94
34200810--34200947	20	6.9	20	79	1	116	36	20	31	12	1.89
34203523--34203624	42	2.4	42	88	3	152	19	29	30	20	1.97
34206310--34206546	45	5.3	45	87	6	297	47	13	17	21	1.82
34206310--34206378	21	3.1	21	63	25	52	47	13	17	21	1.81
34214942--34215105	63	2.6	63	74	6	156	25	18	22	32	1.97
34218071--34218125	7	7.9	7	81	18	62	72	0	3	23	1.00
34218062--34218086	11	2.3	11	100	0	50	84	0	0	16	0.63
34218072--34218125	15	3.8	15	80	20	55	72	0	3	24	1.01
34218525--34218554	9	3.3	9	90	0	51	53	33	3	10	1.51
34222217--34222292	3	25.3	3	100	0	152	67	0	32	0	0.91
34227266--34227309	23	1.9	23	90	9	72	54	4	4	36	1.41
34238246--34238285	20	2.1	19	85	4	53	35	7	10	47	1.65
34243382--34243653	75	3.6	75	90	2	386	15	16	9	58	1.61
34243637--34243678	15	2.9	15	86	10	52	16	2	7	73	1.15
34248988--34249082	46	2.1	46	89	0	145	25	6	21	47	1.74
34254797--34254972	46	3.8	46	75	10	162	28	27	20	22	1.99
34254804--34254975	93	1.8	93	88	2	265	27	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34257368--34257443	15	5.2	15	75	12	77	56	14	17	11	1.67
34257358--34257443	28	3.0	28	81	10	102	56	15	17	10	1.65
34262770--34262821	26	2.0	26	85	7	70	28	32	7	30	1.85
34263003--34263433	40	10.8	40	81	7	457	25	25	21	27	1.99
34263040--34263410	80	4.7	79	89	8	542	25	25	21	27	1.99
34264999--34265149	47	3.2	46	90	3	223	25	30	11	31	1.92
34269205--34269485	40	7.0	40	85	0	373	26	26	21	25	1.99
34269205--34269485	80	3.5	79	92	1	445	26	26	21	25	1.99
34270520--34270691	93	1.8	93	89	0	272	27	27	20	23	1.99
34270513--34270688	46	3.8	46	69	12	144	28	27	20	22	1.99
34272847--34272908	30	2.1	30	87	0	88	32	22	4	40	1.75
34276594--34276620	6	4.5	6	100	0	54	70	0	14	14	1.17
34281315--34281591	39	7.1	39	95	0	493	20	24	31	23	1.98
34286386--34286569	75	2.4	75	78	2	190	30	23	13	32	1.93
34288372--34288404	17	2.0	17	88	5	50	48	0	0	51	1.00
34291867--34292004	66	2.1	66	91	4	226	36	5	24	33	1.78
34292019--34292064	21	2.1	21	84	4	56	10	8	4	76	1.15
34292976--34293019	21	2.1	21	91	0	70	56	11	9	22	1.62
34295827--34296044	44	4.8	44	84	8	280	28	16	28	25	1.97
34295827--34296046	90	2.4	89	83	10	286	28	16	28	25	1.97
34298656--34298717	31	2.0	30	84	3	79	29	24	8	38	1.84
34300625--34300800	40	4.4	40	92	2	284	22	21	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34308715--34308748	18	1.9	18	88	5	52	11	20	44	23	1.84
34308967--34309145	27	6.6	27	77	3	182	40	20	10	28	1.85
34308967--34309145	81	2.2	82	83	5	213	40	20	10	28	1.85
34308968--34309145	54	3.3	54	86	0	230	40	20	10	28	1.86
34309140--34309298	27	5.9	27	80	5	130	31	20	22	25	1.98
34309153--34309298	54	2.7	54	85	0	193	31	19	23	24	1.98
34309152--34309308	81	1.9	81	84	5	210	31	20	22	25	1.98
34309521--34309599	26	3.0	26	88	0	113	21	16	18	43	1.88
34309734--34309838	33	3.2	33	84	1	120	25	20	24	29	1.99
34318017--34318188	93	1.8	93	86	2	247	20	18	30	30	1.96
34325091--34325128	14	2.7	15	84	12	53	44	15	0	39	1.47
34326913--34327007	47	2.0	47	89	0	145	49	13	9	27	1.73
34326921--34327019	47	2.1	47	86	0	135	51	11	9	28	1.67
34331956--34331993	19	2.0	19	94	0	67	21	0	13	65	1.26
34333906--34333987	22	3.8	21	73	9	67	64	10	9	14	1.49
34335667--34335710	19	2.3	19	80	7	54	54	2	0	43	1.12
34335683--34335757	32	2.3	33	88	4	107	57	1	1	40	1.16
34343482--34343524	22	2.0	23	86	9	63	37	0	2	60	1.10
34343551--34343634	26	3.3	26	86	5	100	60	5	1	32	1.28
34343576--34343648	26	2.8	26	87	6	87	64	5	1	28	1.24
34345520--34345633	27	4.2	27	82	0	129	20	21	30	27	1.98
34345695--34345740	24	1.9	24	90	0	74	50	17	15	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34346289--34346402	27	4.2	27	82	0	129	20	21	30	28	1.98
34346464--34346509	24	1.9	24	90	0	74	50	17	15	17	1.79
34345377--34346907	769	2.0	770	98	0	2983	33	12	18	34	1.89
34352025--34352143	60	2.0	60	90	3	186	54	11	0	33	1.37
34352310--34352359	18	2.8	17	79	11	55	2	24	0	74	0.93
34352314--34352364	14	3.7	14	81	2	50	1	27	0	70	0.98
34354389--34354862	54	8.8	53	79	6	391	37	13	18	29	1.89
34354389--34354862	108	4.4	106	81	5	461	37	13	18	29	1.89
34354408--34354862	162	2.8	162	80	3	477	38	12	19	29	1.89
34356198--34356241	20	2.1	22	87	8	65	15	4	13	65	1.41
34357492--34357549	22	2.5	24	80	8	66	25	5	6	62	1.42
34369397--34369506	44	2.5	44	80	2	123	30	20	21	27	1.98
34369519--34369840	88	3.7	87	85	3	407	30	22	18	28	1.97
34369607--34369766	44	3.6	44	67	8	119	30	24	16	29	1.96
34369842--34370004	45	3.6	45	80	2	177	29	19	23	26	1.98
34370748--34370791	20	2.1	22	87	8	65	15	4	13	65	1.41
34371569--34371707	27	5.2	27	74	14	110	35	3	2	57	1.31
34371595--34371627	16	1.9	18	88	11	52	36	3	0	60	1.12
34371507--34371681	97	1.8	96	80	8	212	33	5	2	58	1.36
34374424--34374456	2	16.5	2	100	0	66	0	0	48	51	1.00
34376430--34376485	28	2.0	29	85	3	78	30	26	8	33	1.87
34377928--34378362	50	8.8	50	81	4	481	28	19	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34385032--34385083	25	2.1	25	85	0	68	38	15	9	36	1.80
34392608--34392634	13	2.1	13	100	0	54	29	7	22	40	1.81
34398102--34398302	40	5.0	40	89	4	275	25	27	23	23	2.00
34401767--34401796	16	1.9	15	93	6	51	30	23	0	46	1.52
34402006--34402284	49	5.6	50	82	4	294	33	26	14	25	1.94
34402000--34402284	150	1.9	151	87	2	421	32	26	15	24	1.95
34402052--34402288	101	2.3	101	84	1	296	32	26	15	25	1.96
34404827--34404882	15	3.7	15	82	0	67	55	14	17	12	1.69
34416871--34416914	20	2.2	20	100	0	88	31	36	22	9	1.86
34418197--34418268	37	1.9	37	81	15	87	45	18	9	26	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343