genome.fa.s10.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  106  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35529422--35529463	19	2.2	20	83	12	52	50	19	0	30	1.48
35530548--35530595	16	2.8	17	84	6	53	68	8	6	16	1.35
35535463--35535664	40	5.1	40	89	3	284	24	22	27	25	2.00
35542421--35542445	13	1.9	13	100	0	50	24	24	24	28	2.00
35544895--35544930	18	1.9	19	88	5	56	33	19	2	44	1.65
35545691--35545771	40	2.0	42	85	9	114	17	38	20	23	1.93
35546777--35546947	46	3.7	47	77	11	167	25	29	18	26	1.98
35548212--35548354	40	3.6	40	79	3	153	29	13	26	30	1.95
35555127--35555302	46	3.8	46	78	12	198	30	29	19	20	1.97
35555134--35555305	93	1.8	93	93	0	299	29	29	20	20	1.98
35559353--35559406	26	2.0	27	96	3	101	24	25	24	25	2.00
35562705--35562833	46	2.8	46	92	2	197	31	29	20	19	1.97
35565168--35565226	25	2.4	25	88	5	84	25	23	1	49	1.60
35567595--35567671	9	7.9	9	72	16	64	35	9	20	35	1.85
35567604--35567675	11	7.1	11	70	17	66	36	12	19	31	1.89
35567593--35567675	20	4.2	20	96	0	157	36	12	19	32	1.88
35567728--35567871	24	6.0	24	88	8	213	29	20	21	28	1.98
35568064--35568127	31	2.1	31	87	0	92	35	14	23	26	1.93
35577702--35577874	46	3.8	45	72	17	158	21	19	28	30	1.98
35577699--35577869	93	1.8	93	87	5	256	21	19	29	29	1.98
35579137--35579219	41	2.0	41	95	0	148	15	7	18	59	1.59
35587887--35588058	67	2.6	66	81	7	170	31	16	29	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35587911--35588094	67	2.8	64	78	8	203	28	16	30	23	1.96
35592313--35592483	66	2.6	66	82	6	177	32	16	28	22	1.96
35592337--35592519	66	2.8	64	79	7	210	28	16	30	23	1.97
35595302--35595465	66	2.5	65	81	8	165	32	17	28	22	1.96
35595326--35595505	66	2.8	63	78	10	188	29	16	30	23	1.96
35597405--35597529	29	4.4	28	80	5	135	31	27	15	26	1.96
35597720--35597773	16	3.4	16	84	0	72	9	20	24	46	1.79
35597728--35597778	8	6.4	8	88	0	66	9	17	25	47	1.78
35598995--35599026	16	2.0	16	93	0	55	9	6	34	50	1.60
35610595--35610625	16	1.9	16	93	0	53	58	3	9	29	1.46
35620378--35620419	21	2.0	21	100	0	84	42	14	4	38	1.66
35623896--35623952	30	1.9	30	85	7	80	42	5	24	28	1.76
35624189--35624227	20	1.9	20	84	5	51	35	2	10	51	1.50
35628168--35628193	13	2.0	13	100	0	52	15	38	30	15	1.88
35633228--35633323	49	2.0	49	91	0	156	27	25	23	23	2.00
35634050--35634092	16	2.7	16	89	7	61	6	18	13	60	1.55
35642552--35642578	14	1.9	14	100	0	54	14	14	11	59	1.62
35644933--35645113	77	2.3	80	82	9	212	24	22	27	25	2.00
35644933--35645115	40	4.7	40	82	9	216	24	22	27	25	2.00
35652976--35653159	40	4.6	40	82	9	207	23	22	28	25	1.99
35653028--35653192	79	2.1	79	84	6	210	25	21	27	25	1.99
35661881--35662065	79	2.3	82	82	7	220	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35661862--35662065	40	5.1	40	80	8	220	24	26	22	25	2.00
35669788--35669969	39	4.6	39	78	8	181	25	27	21	25	1.99
35674818--35674849	16	2.0	16	100	0	64	25	6	31	37	1.81
35676731--35676900	46	3.7	46	72	16	161	22	20	28	28	1.98
35676725--35676895	93	1.8	93	88	2	263	22	20	29	28	1.98
35677839--35678023	40	4.6	40	81	6	212	25	22	27	24	2.00
35686680--35686851	46	3.7	46	77	13	199	28	28	21	21	1.99
35686685--35686855	93	1.8	93	93	0	297	28	29	21	21	1.98
35687275--35687334	30	2.0	30	90	0	93	30	25	8	36	1.85
35700034--35700258	40	5.7	40	86	5	296	24	27	22	25	2.00
35700034--35700258	119	1.9	120	84	6	305	24	27	22	25	2.00
35707902--35708140	40	6.1	40	82	9	264	24	28	22	25	2.00
35707902--35708140	116	2.0	118	81	9	276	24	28	22	25	2.00
35721167--35721193	14	1.9	14	100	0	54	59	11	7	22	1.56
35723684--35723735	23	2.3	23	83	9	63	65	3	7	23	1.35
35734385--35734429	22	2.0	22	100	0	90	22	28	13	35	1.92
35737703--35737867	80	2.1	79	91	1	267	28	27	20	23	1.99
35737728--35737867	40	3.5	40	96	0	253	29	28	20	22	1.98
35748411--35748553	27	5.3	27	86	5	191	28	9	22	39	1.86
35748565--35748762	27	7.3	27	86	2	254	38	7	24	28	1.83
35748565--35748762	81	2.4	81	90	1	299	38	7	24	28	1.83
35757578--35757609	8	4.0	8	91	0	55	12	34	12	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35757573--35757606	16	2.1	16	94	0	59	11	32	17	38	1.86
35761405--35761465	30	2.0	30	83	0	77	40	6	22	29	1.79
35770728--35770808	27	3.3	27	61	28	70	61	18	4	14	1.50
35770730--35770822	47	2.0	47	100	0	186	62	19	5	12	1.49
35776071--35776195	46	2.7	46	91	2	198	20	20	28	31	1.97
35786321--35786354	18	1.9	17	88	5	50	73	0	11	14	1.10
35828299--35828329	16	1.9	16	93	0	53	16	29	6	48	1.70
35832588--35832738	28	5.4	28	92	1	223	25	11	28	33	1.92
35838483--35838518	12	3.0	12	95	0	63	44	0	0	55	0.99
35840490--35840646	39	4.0	39	90	1	217	29	28	17	24	1.97
35848640--35848806	39	4.3	39	91	0	244	27	28	20	23	1.99
35856685--35856841	39	4.0	39	94	0	260	28	29	19	22	1.98
35863127--35863282	82	1.9	81	85	3	215	26	16	28	28	1.97
35863126--35863279	55	2.9	52	82	7	175	27	16	27	27	1.97
35863127--35863282	27	5.7	27	81	6	163	26	16	28	28	1.97
35863119--35863303	27	6.8	27	75	9	101	26	16	28	29	1.97
35863119--35863303	82	2.3	81	78	2	210	26	16	28	29	1.97
35867363--35867476	57	2.0	57	100	0	228	22	24	26	26	2.00
35871060--35871235	27	6.5	26	80	7	151	26	16	28	28	1.97
35871059--35871209	54	2.8	55	79	12	168	27	17	27	27	1.97
35871060--35871214	81	1.9	80	85	3	213	27	16	27	28	1.97
35871052--35871235	54	3.4	53	73	10	167	26	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35878845--35879422	93	6.1	94	87	6	805	32	7	29	30	1.85
35878861--35879416	189	2.9	190	87	5	824	32	7	29	29	1.86
35878845--35879424	236	2.5	233	88	5	857	32	7	29	30	1.85
35878845--35879475	47	13.4	47	88	4	828	32	8	29	29	1.86
35879592--35879670	37	2.1	37	90	0	122	24	18	31	25	1.98
35881550--35881622	29	2.6	29	86	6	96	24	16	32	26	1.96
35882011--35882164	39	3.9	40	88	3	224	25	22	27	24	2.00
35882014--35882164	79	1.9	77	87	2	221	25	21	27	24	1.99
35885648--35886128	47	10.3	47	85	9	619	31	7	29	30	1.86
35885648--35886127	183	2.6	189	85	6	660	31	7	29	30	1.86
35889064--35889096	12	2.8	12	95	4	59	0	0	84	15	0.61
35889708--35890230	48	10.4	47	75	20	388	31	28	9	31	1.89
35889721--35890230	47	10.2	46	75	19	277	31	28	9	31	1.88
35923952--35924172	40	5.6	40	83	8	240	23	26	23	26	2.00
35923939--35924094	40	3.9	40	91	1	242	23	26	23	26	2.00
35923926--35924172	79	3.1	80	82	7	254	24	27	22	25	2.00
35924477--35924555	29	2.7	29	86	5	106	27	32	15	24	1.95
35926446--35926523	36	2.1	37	90	2	122	25	30	19	24	1.98
35926641--35927276	47	13.4	47	91	1	912	29	29	8	32	1.87
35935247--35935362	28	4.2	28	87	2	155	37	21	24	17	1.94
35939275--35939344	28	2.5	28	81	9	88	38	21	24	15	1.92
35940564--35940620	18	3.2	18	75	7	62	64	0	29	5	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35948185--35948408	46	4.8	46	79	8	222	22	21	25	29	1.99
35962029--35962250	40	5.6	40	91	1	349	22	23	27	26	2.00
35964562--35964709	42	3.5	42	80	4	138	26	15	26	31	1.96
35966118--35966448	48	6.9	48	81	3	342	27	18	29	24	1.98
35966118--35966445	96	3.4	96	82	1	379	27	18	28	25	1.98
35966131--35966450	144	2.2	144	82	4	385	28	18	28	24	1.98
35974152--35974322	93	1.8	93	88	0	261	28	28	21	21	1.99
35974144--35974319	46	3.8	46	73	10	160	28	28	21	21	1.99
35975946--35976059	57	2.0	57	92	0	192	21	26	21	30	1.98
35980828--35981155	48	6.8	48	82	4	347	28	19	28	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343