genome.fa.s10.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  119  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40047728--40047814	40	2.2	40	83	4	104	39	19	8	33	1.81
40061254--40061487	55	4.4	52	78	12	221	35	17	25	21	1.95
40061261--40061461	108	1.8	110	88	4	309	34	17	25	22	1.96
40077042--40077132	28	3.2	28	87	4	130	31	21	24	21	1.98
40077238--40077305	28	2.4	28	92	0	109	30	7	27	33	1.84
40084820--40084921	28	3.6	28	85	1	123	34	21	23	20	1.97
40085027--40085094	28	2.4	28	92	0	109	32	7	25	35	1.83
40089899--40090143	55	4.6	52	74	13	182	34	17	24	22	1.96
40090345--40090375	16	1.9	16	93	0	53	41	0	22	35	1.54
40095329--40095380	22	2.4	22	83	0	68	21	36	30	11	1.89
40098264--40098518	55	4.8	54	78	9	260	36	17	25	21	1.95
40098271--40098471	108	1.8	110	88	4	309	34	18	24	21	1.96
40098710--40098740	16	1.9	16	93	0	53	41	0	22	35	1.54
40101394--40101545	43	3.6	43	83	8	168	26	15	23	33	1.95
40106557--40106589	15	2.1	16	94	5	59	24	0	42	33	1.55
40107042--40107087	16	2.9	16	83	3	58	41	36	0	21	1.54
40107203--40107255	14	3.7	14	80	5	61	49	28	0	22	1.50
40107203--40107263	22	2.8	22	87	7	81	49	26	0	24	1.51
40107618--40107776	73	2.2	73	86	4	214	31	15	18	33	1.93
40108136--40108274	73	1.9	71	84	5	181	19	35	6	38	1.78
40108720--40108753	16	2.1	16	100	0	68	17	17	11	52	1.73
40109539--40109619	42	1.9	42	100	0	162	33	14	7	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40110815--40110861	24	2.0	24	87	8	69	27	17	8	46	1.76
40111097--40111151	15	3.7	15	75	22	62	47	0	0	52	1.00
40111105--40111154	16	3.3	16	74	25	63	52	0	0	48	1.00
40111095--40111155	29	2.1	29	93	6	106	49	0	0	50	1.00
40111304--40111367	20	3.2	20	73	4	67	43	0	0	56	0.99
40111272--40111379	39	2.8	39	90	2	155	45	0	0	53	1.06
40111325--40111384	15	4.0	15	76	22	63	46	0	0	53	1.00
40111325--40111387	16	4.1	15	75	22	60	47	0	0	52	1.00
40111328--40111395	29	2.3	29	92	7	111	47	0	0	52	1.00
40111078--40111789	235	3.1	232	91	4	1159	37	7	5	49	1.54
40111504--40111570	19	3.5	19	67	18	57	41	0	5	52	1.26
40111522--40111587	20	3.3	20	73	12	73	42	0	3	54	1.15
40111507--40111597	39	2.4	39	94	1	157	43	0	4	51	1.21
40111565--40111619	15	3.7	15	75	22	62	47	0	0	52	1.00
40111563--40111629	29	2.3	29	92	7	109	46	0	0	53	1.00
40111756--40111789	15	2.4	14	90	5	50	50	0	0	50	1.00
40111803--40111883	33	2.4	35	87	6	123	50	14	1	33	1.51
40111803--40111994	9	22.1	9	67	12	64	45	16	1	37	1.54
40111824--40111977	43	3.6	43	85	2	202	45	14	1	38	1.54
40117769--40117860	31	2.9	31	80	3	94	18	5	17	58	1.57
40117978--40118114	43	3.2	43	78	4	125	26	30	21	21	1.98
40126012--40126114	29	3.6	29	82	3	120	23	33	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40126345--40126382	16	2.4	16	90	0	58	7	21	21	50	1.74
40132655--40132691	18	2.1	17	95	5	65	27	10	8	54	1.63
40133761--40133884	28	4.4	28	79	6	151	25	30	14	29	1.95
40133761--40133905	57	2.6	55	82	12	161	27	31	13	28	1.94
40133761--40133905	28	5.1	28	78	9	136	27	31	13	28	1.94
40135653--40135744	25	3.7	25	79	0	94	32	19	18	29	1.96
40138917--40139009	35	2.7	35	84	0	114	43	16	13	26	1.85
40150975--40151053	27	3.0	25	70	25	63	34	16	16	32	1.91
40151383--40151516	60	2.2	59	82	6	153	23	21	24	29	1.99
40151392--40151534	28	5.0	28	81	12	141	23	23	25	27	2.00
40157497--40157596	42	2.3	43	79	1	112	32	21	19	28	1.97
40161531--40161618	32	2.8	32	89	3	124	23	17	27	31	1.97
40167827--40167886	30	2.0	30	93	0	102	60	16	13	10	1.59
40167828--40167887	15	4.0	15	80	0	75	61	16	11	10	1.55
40177507--40177566	30	2.0	30	86	0	84	30	23	8	38	1.84
40178656--40178823	43	4.0	43	84	4	216	24	18	26	30	1.98
40178666--40178823	84	1.9	84	89	0	244	24	18	27	29	1.98
40181936--40182056	47	2.6	46	88	5	170	39	13	21	25	1.90
40182035--40182440	54	7.6	54	77	11	385	36	15	24	23	1.93
40181983--40182426	209	2.1	209	94	0	764	36	14	24	24	1.93
40184633--40184856	40	5.6	40	84	6	283	26	26	22	24	2.00
40184633--40184856	83	2.8	80	85	4	299	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40201185--40201223	21	1.9	21	89	5	62	28	20	28	23	1.99
40216029--40216185	45	3.5	45	90	3	230	22	22	28	26	1.99
40224412--40224595	40	4.6	40	80	10	207	25	27	22	24	2.00
40224412--40224596	79	2.3	81	84	7	236	25	27	22	24	2.00
40231012--40231192	40	4.6	40	91	2	278	22	27	23	26	1.99
40234700--40234885	70	2.6	69	87	5	237	30	30	17	21	1.96
40234770--40234988	101	2.2	103	91	4	356	31	31	19	18	1.96
40234861--40234912	27	1.9	27	96	0	95	28	32	25	13	1.93
40235315--40235373	31	1.9	31	86	3	84	28	27	6	37	1.82
40242205--40242256	26	2.0	26	92	0	86	28	34	21	15	1.94
40242217--40242367	72	2.1	71	91	2	241	30	29	16	23	1.96
40242286--40242509	104	2.2	104	91	1	369	31	31	19	18	1.95
40242837--40242900	30	2.2	29	81	10	76	29	28	6	35	1.82
40242844--40242900	30	1.9	30	85	3	80	29	24	7	38	1.82
40243717--40245781	23	90.2	23	72	9	1340	37	22	6	33	1.80
40243713--40245432	229	7.5	229	89	1	2341	37	23	6	33	1.81
40243713--40245448	458	3.7	458	90	3	2629	37	23	6	33	1.80
40244862--40245448	252	2.3	252	92	1	971	36	23	6	33	1.82
40245343--40245781	229	1.9	229	87	2	650	38	20	7	33	1.80
40247529--40247654	28	4.5	28	91	1	191	27	12	26	32	1.93
40250966--40253337	23	103.6	23	74	9	1665	36	23	6	32	1.81
40250931--40253337	206	11.7	204	75	9	899	37	23	6	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40250966--40253144	229	9.5	229	92	1	3232	36	23	6	32	1.81
40250966--40253337	458	5.2	458	91	2	3788	36	23	6	32	1.81
40255581--40255631	25	2.0	25	96	0	93	35	27	29	7	1.85
40258051--40258195	40	3.6	40	85	6	186	24	26	24	25	2.00
40259382--40259457	38	2.0	38	100	0	152	31	23	13	31	1.93
40260008--40260110	7	14.4	7	68	8	55	49	27	0	22	1.56
40260002--40260049	15	3.3	15	82	5	62	45	35	0	18	1.50
40260005--40260110	22	5.0	21	71	7	70	48	28	0	22	1.57
40263863--40264040	27	6.6	27	83	3	205	26	15	28	29	1.96
40263864--40264019	82	1.9	81	88	3	233	26	15	28	29	1.96
40263860--40264040	82	2.2	81	83	2	229	27	15	27	29	1.96
40267070--40267154	29	3.0	28	74	5	80	29	27	15	28	1.96
40267212--40267247	18	2.1	18	89	5	56	19	33	22	25	1.97
40268795--40268835	18	2.2	19	83	12	50	14	39	26	19	1.90
40271393--40271477	29	3.0	28	86	8	109	30	28	14	27	1.95
40273843--40274067	40	5.7	40	82	9	232	24	27	21	25	1.99
40273843--40274067	79	2.8	78	80	10	258	24	27	21	25	1.99
40281055--40281278	40	5.7	40	86	4	260	25	27	21	25	2.00
40281055--40281225	79	2.2	79	87	6	240	25	27	21	26	1.99
40298209--40298233	13	1.9	13	100	0	50	0	48	28	24	1.52
40298352--40298416	30	2.2	30	94	0	112	26	27	26	20	1.99
40306395--40306618	104	2.2	104	93	1	378	17	19	31	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40306537--40306688	71	2.1	72	92	1	252	23	17	29	30	1.97
40313949--40314171	104	2.2	103	93	2	376	17	19	31	31	1.95
40314090--40314241	71	2.1	72	92	1	252	23	17	29	30	1.97
40315499--40315550	26	2.0	26	100	0	104	30	23	15	30	1.95
40317208--40317377	47	3.7	47	75	12	172	24	28	17	29	1.97
40321973--40322208	54	4.4	54	87	0	310	36	19	19	24	1.95
40321954--40322208	81	3.2	79	79	9	289	37	19	19	24	1.94
40321951--40322215	27	9.8	26	80	9	255	36	18	19	24	1.94
40323802--40323985	40	4.6	40	80	6	178	23	20	27	28	1.99
40323923--40324045	40	3.1	39	77	6	97	26	21	28	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343