genome.fa.s10.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  144  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47790737--47790793	27	2.1	27	93	0	96	28	19	21	31	1.97
47792558--47792673	60	1.9	60	81	6	137	30	22	21	25	1.99
47792793--47792845	22	2.4	22	87	0	70	28	24	32	15	1.95
47793095--47793151	27	2.1	27	93	0	96	28	19	21	31	1.97
47795978--47796030	22	2.4	22	87	0	70	28	24	32	15	1.95
47796276--47796331	26	2.1	27	90	3	87	26	19	21	32	1.97
47796276--47796340	26	2.5	26	82	5	69	27	18	24	29	1.98
47798089--47798204	60	1.9	60	81	6	137	30	22	21	25	1.99
47798322--47798374	22	2.4	22	87	0	70	28	24	32	15	1.95
47798623--47798679	27	2.1	27	93	0	96	28	19	21	31	1.97
47801067--47801101	18	1.9	18	88	0	52	31	8	25	34	1.86
47801748--47801812	27	2.4	27	84	5	87	20	24	20	35	1.96
47801866--47802095	27	8.4	27	75	12	175	31	7	20	40	1.80
47801851--47802095	54	4.5	54	78	5	242	31	7	20	41	1.80
47801843--47802080	81	2.9	80	75	12	216	30	7	20	41	1.81
47802074--47802230	27	5.8	27	88	1	226	37	8	24	29	1.84
47802050--47802249	81	2.5	81	81	2	242	36	8	22	33	1.84
47802046--47802230	54	3.4	54	81	1	219	36	8	23	31	1.84
47809115--47809296	40	4.6	40	94	1	303	28	26	21	23	1.99
47814482--47815124	47	13.6	47	94	1	1106	29	29	8	32	1.87
47814482--47815124	237	2.7	235	95	1	1115	29	29	8	32	1.87
47817263--47817441	85	2.1	85	95	0	331	26	27	8	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47818978--47819222	47	5.2	47	93	0	418	25	28	11	35	1.90
47819028--47819150	22	5.3	22	64	27	67	24	28	13	34	1.92
47819097--47819221	23	5.2	24	62	30	63	28	28	10	32	1.90
47823139--47823185	24	2.0	24	91	0	76	46	23	19	10	1.80
47823139--47823189	8	6.4	8	81	0	57	49	21	19	9	1.77
47823400--47823512	29	4.0	28	84	2	127	25	14	30	29	1.95
47829416--47829508	27	3.5	26	79	8	89	22	22	15	39	1.91
47829526--47829865	27	12.7	27	88	1	452	37	16	13	32	1.88
47839896--47839941	20	2.3	20	88	0	65	36	17	23	21	1.94
47848241--47848267	13	2.1	13	100	0	54	59	0	7	33	1.25
47848401--47848429	12	2.5	12	94	5	51	24	27	0	48	1.51
47852164--47852278	27	4.3	27	80	6	117	23	19	16	40	1.90
47852274--47852641	27	13.7	27	87	0	495	37	15	14	32	1.88
47864992--47865150	44	3.6	44	74	11	164	21	20	25	32	1.97
47864989--47865176	87	2.2	87	91	0	295	21	20	24	33	1.97
47864989--47865198	87	2.4	87	86	1	278	21	19	25	33	1.97
47866241--47866272	12	2.7	12	100	0	64	18	34	37	9	1.83
47876893--47877064	46	3.7	46	79	14	201	20	19	29	30	1.97
47876886--47877057	93	1.8	93	92	2	292	21	20	29	29	1.98
47889116--47889210	27	3.5	27	78	8	95	41	20	8	30	1.81
47889213--47889427	27	8.0	27	88	1	299	28	20	9	40	1.84
47889225--47889462	81	3.0	81	83	3	205	30	20	8	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47889424--47889527	27	3.9	26	78	6	82	42	21	6	29	1.78
47889418--47889557	54	2.6	53	77	6	147	41	22	7	29	1.80
47889456--47889556	27	3.7	27	85	5	107	43	22	6	26	1.78
47889539--47889844	27	11.6	27	84	4	381	33	20	21	24	1.97
47889485--47889844	54	6.8	54	81	4	365	34	20	19	25	1.96
47890264--47890342	31	2.5	31	89	4	115	18	13	13	53	1.73
47892354--47892413	27	2.2	27	85	5	77	41	21	6	30	1.79
47892428--47892675	27	9.3	27	89	0	329	31	20	8	40	1.81
47892696--47892795	27	3.7	27	82	6	107	42	23	8	27	1.81
47892724--47893034	27	11.6	27	85	2	349	34	20	19	25	1.96
47893454--47893532	6	12.8	6	70	19	56	20	15	13	50	1.77
47893454--47893532	31	2.5	31	93	0	131	20	15	13	50	1.77
47908523--47908707	39	4.7	39	95	0	307	21	22	27	29	1.99
47910385--47910435	21	2.4	21	96	0	93	41	15	15	27	1.88
47912647--47912814	40	4.2	40	88	3	225	29	27	20	22	1.98
47920663--47920827	40	4.2	40	89	3	244	27	27	21	23	1.99
47925926--47926153	114	2.0	113	90	0	357	33	23	13	29	1.93
47925924--47926158	56	4.2	56	90	2	355	33	23	14	29	1.94
47929707--47929800	34	2.8	32	78	10	100	28	25	21	24	1.99
47930119--47930175	26	2.2	26	83	3	69	28	19	17	35	1.94
47930421--47930453	17	1.9	17	88	11	50	27	0	0	72	0.85
47931409--47931466	15	3.9	15	72	2	55	67	0	27	5	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47932527--47932570	19	2.4	18	85	7	54	40	9	0	50	1.34
47935375--47935522	56	2.6	56	89	0	224	33	21	14	30	1.94
47942966--47942996	4	7.8	4	92	0	53	74	0	25	0	0.82
47943284--47943313	11	2.7	11	94	0	51	66	0	0	33	0.92
47946031--47946072	22	1.9	22	85	9	59	42	16	0	40	1.48
47953015--47953093	37	2.1	37	88	4	115	25	30	18	25	1.98
47953210--47953557	47	7.4	47	94	0	572	28	29	8	32	1.88
47954024--47957333	826	4.0	826	99	0	6586	33	21	10	35	1.87
47983384--47983555	93	1.8	93	87	0	254	28	28	20	22	1.99
47983376--47983548	46	3.7	46	71	13	156	30	27	19	23	1.98
47985651--47985723	35	2.1	35	100	0	146	34	5	20	39	1.76
47993005--47993074	33	2.1	33	97	0	131	50	5	15	28	1.67
47999541--47999584	19	2.3	19	76	0	52	40	0	27	31	1.56
48002844--48002928	42	2.0	42	97	0	161	40	14	22	23	1.90
48006960--48006989	11	2.7	11	100	0	60	26	10	10	53	1.66
48009489--48009558	26	2.8	25	81	10	81	40	21	21	17	1.92
48010819--48010908	24	3.8	24	86	2	119	22	22	22	33	1.97
48010820--48010951	23	5.6	23	72	14	90	25	20	20	33	1.97
48017999--48018097	47	2.1	46	85	9	130	32	9	13	45	1.74
48018820--48019133	170	1.8	170	91	1	513	28	23	17	31	1.97
48021355--48021501	65	2.3	65	84	0	177	36	22	19	21	1.95
48022834--48022877	22	2.0	22	86	0	61	31	4	29	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48023833--48023911	32	2.5	32	85	0	95	32	12	27	26	1.93
48023989--48024057	29	2.4	29	92	0	111	27	15	23	33	1.95
48024000--48024079	29	2.8	29	86	7	92	32	16	22	28	1.95
48030677--48030796	60	2.0	60	93	0	204	25	15	20	40	1.90
48033096--48033168	34	2.1	34	97	0	137	34	9	13	42	1.77
48033557--48033642	41	2.1	41	97	0	163	37	32	10	19	1.86
48046373--48046547	46	3.8	46	78	13	196	30	28	20	20	1.98
48046379--48046550	93	1.8	93	93	0	299	29	29	20	20	1.98
48053945--48054116	93	1.8	93	96	0	317	27	29	21	20	1.98
48053938--48054113	46	3.8	46	79	12	216	28	29	21	20	1.98
48055807--48055850	22	2.0	22	90	0	70	29	20	15	34	1.94
48057762--48057793	12	2.7	12	95	0	55	12	34	21	31	1.91
48059630--48059661	13	2.4	14	85	15	50	37	3	37	21	1.70
48060421--48060553	27	4.9	27	78	5	135	35	20	24	20	1.96
48060421--48060553	54	2.5	54	87	2	187	35	20	24	20	1.96
48062100--48062199	49	2.0	50	92	1	166	36	25	6	33	1.80
48062099--48062203	26	4.2	26	84	7	153	37	24	5	32	1.79
48067283--48067313	16	1.9	16	93	0	53	25	3	9	61	1.42
48068278--48068413	27	5.0	28	80	10	151	36	21	24	18	1.95
48068278--48068413	54	2.5	54	90	4	213	36	21	24	18	1.95
48069964--48070071	26	4.2	26	87	0	153	36	25	7	30	1.84
48074616--48075057	47	9.4	47	93	0	722	32	9	29	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48076992--48077081	41	2.2	41	88	4	128	35	15	27	21	1.94
48086454--48086617	45	3.7	45	89	0	258	25	26	23	23	2.00
48094166--48094383	45	5.0	45	86	6	279	26	27	20	24	1.99
48101273--48101354	28	2.9	27	81	3	83	31	24	13	30	1.93
48101315--48101412	28	3.5	28	78	0	115	27	28	14	29	1.95
48101291--48101407	56	2.1	56	87	3	164	30	25	13	29	1.94
48109039--48109088	20	2.4	22	83	6	59	22	8	20	50	1.74
48120035--48120074	13	3.1	13	85	0	53	30	5	22	42	1.75
48140725--48140776	26	2.0	27	85	11	72	36	0	5	57	1.23
48142322--48142772	223	2.0	223	87	3	667	41	20	11	26	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343