genome.fa.s10.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  155  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51424159--51424333	25	6.8	26	82	9	173	40	6	22	30	1.80
51424339--51424426	27	3.3	26	80	12	99	32	10	17	39	1.83
51424323--51424426	52	2.0	53	83	9	133	31	10	19	38	1.86
51435581--51435630	25	2.0	25	84	0	64	10	30	0	60	1.30
51438046--51438083	19	2.0	19	100	0	76	31	10	26	31	1.90
51438089--51438163	34	2.2	34	92	0	123	40	16	24	20	1.91
51438184--51438357	46	3.8	46	77	10	183	23	21	27	27	1.99
51438178--51438350	93	1.9	93	90	2	276	23	21	27	27	1.99
51444678--51444821	46	3.1	46	70	11	123	29	29	19	21	1.98
51449336--51449496	46	3.5	46	75	12	166	27	27	21	22	1.99
51449914--51449973	30	2.0	30	90	0	93	30	25	8	36	1.85
51456850--51457020	93	1.8	93	96	0	315	28	28	21	21	1.99
51456845--51457017	46	3.7	46	78	13	210	28	27	21	21	1.99
51457428--51457486	30	2.0	29	86	3	82	30	25	6	37	1.82
51464368--51464537	92	1.8	93	87	6	256	29	27	20	22	1.98
51470488--51470657	49	3.5	48	77	7	157	25	27	20	26	1.99
51470720--51470828	46	2.4	46	77	10	125	23	27	19	29	1.98
51474475--51474513	20	2.0	20	90	10	62	35	17	0	46	1.49
51478361--51478411	26	2.0	26	96	0	93	11	23	35	29	1.90
51478283--51478547	103	2.6	103	92	1	433	18	19	31	30	1.96
51478464--51478515	26	2.0	26	92	0	86	15	21	34	28	1.94
51485823--51485874	26	2.0	26	92	0	86	15	21	34	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51485641--51485906	104	2.6	103	91	1	426	18	19	31	30	1.96
51489192--51489303	29	3.9	29	86	6	149	28	31	15	25	1.95
51489183--51489293	58	1.9	57	88	1	168	27	31	15	25	1.95
51490657--51490692	16	2.2	17	90	5	56	13	2	27	55	1.52
51494968--51495043	26	2.9	26	74	3	71	22	13	22	42	1.88
51497160--51497225	32	2.1	32	97	0	123	30	15	18	36	1.91
51498800--51498834	18	1.9	18	88	0	52	48	0	0	51	1.00
51501646--51501699	27	2.0	27	85	0	72	38	14	7	38	1.75
51504176--51504220	15	2.9	16	77	12	58	55	13	11	20	1.68
51508235--51508298	27	2.4	27	81	0	74	39	15	6	39	1.73
51511733--51511769	19	1.9	19	100	0	74	27	13	10	48	1.75
51512663--51512705	22	2.0	23	86	9	63	58	4	4	32	1.39
51512725--51512749	10	2.5	10	100	0	50	20	0	8	72	1.10
51513583--51513619	20	1.9	18	89	10	56	37	5	8	48	1.56
51517208--51517239	15	2.1	15	100	0	64	50	25	6	18	1.70
51518766--51518817	25	2.1	24	89	3	77	28	40	9	21	1.84
51519926--51519979	22	2.3	23	87	6	74	24	1	3	70	1.13
51520117--51520169	20	2.9	19	75	13	58	62	5	0	32	1.19
51527551--51528074	47	11.1	47	92	2	789	33	12	28	25	1.92
51527551--51528074	143	3.7	143	90	2	815	33	12	28	25	1.92
51527769--51527843	22	3.3	22	64	29	57	30	13	30	25	1.94
51528048--51528184	46	3.0	46	84	0	175	35	8	30	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51531160--51531229	36	1.9	36	82	0	86	22	14	30	32	1.94
51536787--51536842	26	2.2	26	93	6	96	12	19	25	42	1.86
51538282--51538317	15	2.4	15	90	0	54	8	22	30	38	1.83
51543269--51543386	39	3.0	39	94	0	209	22	25	29	22	1.99
51545846--51546115	46	5.7	47	77	8	225	26	19	29	24	1.98
51545936--51546111	96	1.8	96	87	8	266	25	18	30	25	1.98
51545849--51546119	146	1.9	140	84	7	357	26	18	29	25	1.98
51559262--51559339	25	3.2	25	64	10	72	33	30	3	32	1.76
51559211--51560046	47	17.6	47	92	2	1291	29	29	8	33	1.86
51559211--51560046	96	8.8	96	91	3	1302	29	29	8	33	1.86
51559908--51559983	22	3.3	22	66	16	64	26	30	10	32	1.90
51562548--51562646	40	2.5	40	86	3	128	24	18	24	33	1.97
51562616--51562734	41	2.9	42	81	5	125	26	14	27	31	1.95
51564092--51564125	17	2.0	17	94	0	59	38	11	11	38	1.79
51569037--51569063	12	2.2	12	100	0	54	29	7	40	22	1.81
51573177--51573201	2	12.5	2	100	0	50	48	0	0	52	1.00
51575710--51575809	27	3.7	28	80	9	100	41	20	9	30	1.83
51575710--51575816	54	2.0	54	83	3	135	39	20	9	30	1.84
51575805--51576017	54	3.9	54	86	0	300	29	23	7	39	1.81
51575805--51576017	27	7.9	27	87	2	257	29	23	7	39	1.81
51575738--51576215	27	17.6	27	79	5	176	36	20	8	34	1.83
51575738--51576026	54	5.4	54	79	1	247	33	22	7	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51575751--51576150	81	4.9	81	75	3	266	33	22	8	35	1.84
51575967--51576246	27	10.3	27	78	3	177	38	19	9	33	1.83
51576240--51576341	27	3.8	26	73	10	80	37	20	20	21	1.95
51577121--51577270	26	5.8	26	90	0	239	26	22	24	27	1.99
51577121--51577270	52	2.9	52	95	1	266	26	22	24	27	1.99
51577413--51577504	42	2.2	42	86	3	132	30	13	20	35	1.91
51577528--51577606	31	2.5	31	91	0	131	30	17	25	26	1.97
51579694--51580016	46	6.9	46	91	2	423	21	23	13	41	1.89
51582099--51582134	19	1.9	18	88	5	54	0	22	0	77	0.76
51583198--51583781	294	2.0	291	98	1	1141	34	22	17	25	1.96
51587493--51587723	101	2.3	101	84	4	288	32	24	13	29	1.93
51588249--51588290	20	2.1	20	100	0	84	52	23	4	19	1.65
51597171--51597358	94	2.0	94	97	0	358	25	14	15	44	1.85
51602645--51602689	23	2.0	22	86	4	63	17	13	20	48	1.80
51605723--51605747	13	1.9	13	100	0	50	32	4	16	48	1.64
51608831--51608870	20	2.1	19	85	4	53	22	2	5	70	1.19
51609005--51609087	28	2.9	28	81	10	80	57	4	0	37	1.20
51609182--51609228	22	2.1	22	92	0	76	40	12	27	19	1.88
51610578--51610647	26	2.7	27	74	22	69	58	1	0	40	1.07
51611569--51611634	9	6.6	10	79	11	73	39	1	0	59	1.07
51611569--51611634	19	3.3	19	74	14	62	39	1	0	59	1.07
51613748--51613893	73	2.0	73	98	0	283	40	8	17	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51613979--51614005	10	2.7	10	100	0	54	22	22	29	25	1.99
51618336--51618476	40	3.5	40	95	0	237	29	29	19	21	1.98
51625799--51625872	37	2.0	37	97	0	139	36	22	24	16	1.94
51631413--51631484	28	2.6	27	84	4	108	31	4	18	45	1.68
51632854--51632907	21	2.7	20	86	11	74	37	5	1	55	1.34
51634517--51634574	24	2.4	23	75	13	64	48	1	0	50	1.11
51639425--51639468	21	2.2	20	83	4	52	40	25	6	27	1.80
51646681--51646753	26	2.8	26	81	6	78	17	23	23	35	1.95
51653949--51653994	11	4.2	11	86	5	58	17	2	15	65	1.37
51655433--51655463	10	3.1	10	100	0	62	9	61	29	0	1.28
51657012--51657422	49	8.6	49	92	3	671	33	8	28	29	1.86
51657012--51657422	96	4.3	96	94	1	700	33	8	28	29	1.86
51659848--51659922	38	2.0	38	86	5	107	30	18	26	24	1.98
51659980--51660416	40	10.9	40	94	0	712	25	22	26	24	2.00
51662729--51663090	47	7.6	47	91	2	562	33	8	28	29	1.86
51662729--51663090	96	3.8	94	90	3	562	33	8	28	29	1.86
51672206--51672428	64	3.5	64	94	1	358	44	9	5	39	1.62
51674887--51674934	22	2.2	22	88	0	69	45	10	10	33	1.72
51677601--51677656	23	2.8	19	80	17	60	67	1	3	26	1.16
51682685--51682714	16	1.9	15	93	6	51	40	33	0	26	1.57
51683087--51683154	2	34.0	2	93	0	118	48	1	50	0	1.10
51692348--51692384	19	1.9	19	88	0	56	32	10	21	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51700356--51700406	26	2.0	26	92	3	86	29	35	21	13	1.92
51700324--51700589	105	2.6	103	92	3	428	30	30	20	18	1.96
51700915--51700977	29	2.2	29	81	13	76	30	26	6	36	1.81
51700922--51700977	29	1.9	30	85	7	80	30	23	7	39	1.81
51707837--51707884	25	1.9	25	95	0	87	31	35	20	12	1.90
51707802--51708169	104	3.6	104	95	1	627	30	30	20	18	1.97
51708496--51708559	30	2.2	29	81	10	76	29	28	6	35	1.82
51708503--51708559	30	1.9	30	85	3	80	29	24	7	38	1.82
51720651--51720711	24	2.5	24	81	5	70	34	27	16	21	1.95
51727871--51727931	24	2.5	24	86	5	79	34	29	16	19	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343