Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  14  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4899122--4899154
12
2.7
12
95
4
57
36
0
0
63
0.95
4900334--4900375
21
2.0
21
86
4
59
59
7
2
30
1.37
4904011--4904080
32
2.2
33
89
2
106
48
7
12
31
1.68
4905183--4905251
28
2.5
27
72
23
70
33
2
10
53
1.49
4915478--4915506
14
2.0
15
93
6
51
20
6
17
55
1.65
4915622--4915750
50
2.5
51
87
5
190
35
15
22
26
1.94
4915726--4915905
31
5.8
31
88
2
263
27
18
27
26
1.98
4916024--4916136
42
2.7
42
87
2
147
30
13
26
30
1.94
4923025--4923110
21
3.9
23
80
10
90
37
25
22
15
1.93
4923482--4923539
15
3.8
15
86
2
80
53
10
0
36
1.35
4924817--4924843
5
5.4
5
100
0
54
59
0
0
40
0.98
4930213--4930277
21
3.2
21
74
12
73
41
21
26
10
1.86
4930207--4930295
39
2.3
39
96
0
160
39
23
23
13
1.90
4930225--4930288
19
3.3
19
70
12
67
37
23
25
14
1.92
4938178--4938217
18
2.2
18
86
4
53
62
2
2
32
1.22
4939223--4939251
8
3.6
8
100
0
58
37
0
0
62
0.96
4939311--4939343
16
2.1
16
94
0
57
63
9
21
6
1.45
4940808--4940857
15
3.3
15
88
0
73
58
14
18
10
1.63
4940800--4940866
15
4.5
15
79
7
57
55
16
17
10
1.69
4942259--4942292
10
3.3
10
95
4
59
38
20
2
38
1.68
4948284--4948444
39
4.1
39
88
4
128
29
31
22
17
1.96
4948311--4948444
39
3.5
38
93
2
223
28
30
23
17
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4950434--4950474
19
2.2
19
90
0
64
39
9
0
51
1.35
4952719--4953074
135
2.7
132
92
2
563
26
23
20
29
1.99
4953175--4953227
13
3.8
13
75
18
52
32
49
3
15
1.62
4953175--4953242
30
2.3
30
89
0
100
29
47
2
20
1.65
4953597--4953729
3
45.0
3
71
15
82
30
3
1
64
1.20
4954890--4955902
133
7.6
133
94
0
1722
26
24
21
27
1.99
4955017--4955627
43
13.8
44
65
17
239
26
25
21
27
1.99
4963614--4963658
21
2.1
21
91
0
72
17
24
20
37
1.93
4967989--4968029
13
3.1
14
83
10
52
73
0
2
24
0.96
4967990--4968039
22
2.3
22
79
6
57
70
0
4
26
1.05
4968271--4968385
12
10.3
11
66
21
53
67
0
6
25
1.15
4970382--4970420
20
1.9
21
89
5
62
46
5
10
38
1.60
4971897--4971934
13
3.0
13
84
3
51
42
0
0
57
0.98
4972199--4972227
13
2.1
14
93
6
51
48
0
0
51
1.00
4972626--4972658
15
2.2
15
89
10
50
3
9
6
81
0.95
4972626--4972658
14
2.3
15
89
5
50
3
9
6
81
0.95
4983641--4983679
13
3.0
13
82
10
53
43
0
0
56
0.99
4983641--4983680
14
2.9
14
85
3
55
45
0
0
55
0.99
4983687--4983755
19
3.6
19
76
20
72
50
0
1
47
1.09
4983687--4983760
22
3.5
21
77
12
64
51
0
1
47
1.09
4995121--4995153
16
2.1
16
94
0
57
24
24
12
39
1.89
4996722--4996759
17
2.2
17
86
9
51
28
13
2
55
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5002307--5002352
23
2.2
20
84
11
56
30
2
0
67
1.03
5002307--5002352
21
2.1
22
84
11
60
30
2
0
67
1.03
5003791--5003876
45
1.9
45
100
0
172
37
16
17
29
1.91
5016334--5016358
9
2.8
9
100
0
50
64
0
0
36
0.94
5017145--5017243
5
18.2
5
75
13
56
26
5
0
68
1.10
5017162--5017213
6
9.5
6
86
14
69
30
0
0
69
0.89
5017162--5017213
23
2.4
21
90
9
79
30
0
0
69
0.89
5017162--5017212
11
4.7
11
83
13
70
31
0
0
68
0.90
5017306--5017352
22
2.2
22
85
11
62
65
2
0
31
1.04
5017617--5017650
3
11.3
3
87
0
50
35
5
0
58
1.22
5018832--5018865
13
2.8
12
86
8
50
35
0
2
61
1.11
5027700--5027736
19
2.0
18
89
5
56
54
0
0
45
1.00
5030274--5030361
44
2.0
44
80
8
99
34
1
2
62
1.15
5030364--5030400
19
1.9
19
88
0
56
27
0
8
64
1.21
5032033--5032094
30
2.1
30
90
0
97
58
11
3
27
1.48
5033196--5033248
18
2.8
20
86
10
69
60
0
3
35
1.15
5033258--5033299
21
2.0
22
85
4
59
52
2
0
45
1.13
5034110--5034148
20
2.0
20
85
10
53
28
7
7
56
1.55
5050848--5051093
131
1.9
131
92
2
415
33
19
20
26
1.96
5051980--5052030
19
2.6
19
84
3
66
50
1
7
39
1.42
5052479--5052508
14
2.1
14
100
0
60
33
26
13
26
1.93
5052493--5052711
116
1.9
116
98
0
420
34
25
12
27
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5053659--5053687
8
3.6
8
100
0
58
86
0
0
13
0.58
5057955--5058017
30
2.1
30
96
0
117
57
12
3
26
1.51
5058435--5058468
17
2.0
17
88
0
50
32
2
0
64
1.08
5059236--5059265
15
1.9
16
93
6
53
56
0
10
33
1.32
5067515--5067555
21
2.0
21
90
0
64
19
29
21
29
1.98
5072629--5072687
31
1.9
31
82
6
75
49
1
6
42
1.39
5075063--5075087
4
6.2
4
100
0
50
52
0
0
48
1.00
5090423--5090482
31
1.9
31
89
0
93
40
5
6
48
1.51
5091523--5091547
11
2.3
11
100
0
50
40
8
0
52
1.31
5095260--5095355
48
2.0
48
100
0
192
39
12
14
33
1.84
5105915--5106261
47
7.4
47
93
0
568
32
8
30
29
1.86
5118538--5118657
35
3.4
35
76
11
120
42
18
8
30
1.80
5124882--5124926
11
3.9
11
80
11
54
35
0
0
64
0.94
5124877--5124932
24
2.3
24
87
3
76
37
0
1
60
1.07
5127058--5127285
46
5.0
46
91
1
305
41
14
23
21
1.89
5128691--5128828
35
3.9
35
76
9
129
41
17
10
31
1.82
5135635--5135707
36
2.0
36
100
0
146
24
19
30
26
1.98
5138798--5138939
46
3.1
44
73
14
119
29
29
19
21
1.97
5141799--5141853
20
2.8
20
81
8
60
65
3
1
29
1.20
5141847--5141892
23
2.0
24
87
12
69
67
0
4
28
1.10
5147575--5147599
13
1.9
13
100
0
50
40
8
12
40
1.72
5150868--5150903
17
2.1
17
89
5
54
41
25
2
30
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5156802--5156841
21
1.9
21
85
10
55
45
7
27
20
1.78
5157542--5157580
20
2.0
20
85
14
55
56
0
5
38
1.22
5167411--5167455
17
2.6
18
82
13
58
62
2
0
35
1.08
5167550--5167600
20
2.5
20
83
0
66
58
1
1
37
1.20
5168825--5168864
21
1.9
21
89
0
62
62
5
0
32
1.17
5170664--5170707
15
2.8
15
79
6
52
34
0
4
61
1.16
5171069--5171122
22
2.5
22
79
8
56
50
5
7
37
1.54
5173891--5173953
30
2.0
33
85
11
89
41
0
6
52
1.27
5173891--5173953
29
2.1
29
82
14
74
41
0
6
52
1.27
5174055--5174113
31
1.9
31
86
6
84
55
5
0
38
1.22
5174954--5175010
29
1.9
30
85
3
80
73
7
5
14
1.21
5186581--5186623
21
2.0
21
83
16
54
51
0
0
48
1.00
5188088--5188121
16
2.1
16
88
0
50
50
14
17
17
1.79
5190916--5190956
21
2.0
21
90
0
64
29
21
29
19
1.98
5192861--5192894
16
2.1
16
88
0
50
50
14
17
17
1.79
5196841--5197057
107
2.0
107
91
1
355
31
10
18
38
1.85
5199204--5199255
20
2.5
21
87
6
61
40
3
1
53
1.30
5199214--5199255
20
2.0
21
95
4
77
40
4
0
54
1.21
5199449--5199518
30
2.3
30
95
0
131
55
0
2
41
1.14
5206938--5206978
21
1.9
22
85
5
57
58
2
7
31
1.38
5210121--5210302
83
2.2
83
87
3
258
46
8
10
34
1.69
5211818--5211865
23
2.1
23
100
0
96
16
4
20
58
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5217781--5217930
80
1.9
79
91
1
246
28
16
16
38
1.91
5219521--5219549
14
2.1
14
93
6
51
48
0
3
48
1.18
5233197--5233239
5
8.6
5
84
0
59
20
53
18
6
1.67
5237462--5237502
16
2.7
15
85
7
55
51
0
7
41
1.30
5237997--5238056
22
2.7
23
82
7
61
63
5
0
31
1.16
5237997--5238045
21
2.3
21
83
13
57
61
4
0
34
1.15
5237998--5238058
23
2.7
23
79
7
70
62
4
0
32
1.17
5238539--5238576
6
6.5
6
87
6
60
44
0
0
55
0.99
5246526--5246630
29
3.7
29
72
12
83
28
7
0
63
1.21
5246555--5246594
15
2.5
15
88
8
53
30
7
0
62
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343