Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  324  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104354361--104354656
146
2.0
146
99
0
583
30
19
14
35
1.91
104360978--104361051
31
2.4
32
80
13
91
52
4
13
29
1.58
104360994--104361077
31
2.8
31
85
7
102
55
4
11
27
1.56
104365898--104365941
21
2.1
21
83
8
54
25
6
18
50
1.71
104369795--104369854
28
2.1
28
87
6
86
48
1
5
45
1.34
104372240--104372290
24
2.0
27
85
14
72
25
1
11
60
1.41
104372292--104372336
22
2.0
23
83
12
58
35
2
4
57
1.31
104372994--104373074
23
3.3
23
72
21
67
33
13
2
50
1.55
104377073--104377123
14
3.7
14
75
21
54
27
7
1
62
1.33
104377321--104377458
63
2.2
62
79
8
145
34
5
3
55
1.41
104377482--104377534
23
2.5
22
82
11
65
33
1
9
54
1.43
104377582--104377643
24
2.7
23
82
5
70
35
3
6
54
1.42
104377608--104377660
23
2.2
25
83
9
67
32
5
3
58
1.39
104377736--104377804
25
2.7
25
79
2
84
33
5
7
53
1.52
104377846--104377945
43
2.2
45
81
13
109
32
5
6
57
1.45
104379981--104380139
84
1.9
87
88
7
245
28
11
6
53
1.62
104380970--104381018
25
2.0
25
84
4
64
63
8
0
28
1.23
104380982--104381046
25
2.9
23
80
15
66
66
7
0
26
1.19
104381008--104381046
19
2.0
20
90
5
62
71
7
0
20
1.10
104382912--104382942
16
1.9
16
93
0
53
29
16
12
41
1.85
104384853--104384893
21
2.0
21
90
0
64
19
29
21
29
1.98
104390064--104390174
31
3.7
30
79
12
104
33
10
14
41
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104390125--104390190
31
2.1
31
91
0
105
34
10
10
43
1.74
104390608--104390866
88
3.0
87
85
3
335
37
21
8
32
1.83
104391089--104391252
19
8.6
20
67
11
67
31
4
3
60
1.31
104391085--104391243
49
3.3
47
71
15
128
31
4
3
61
1.32
104391158--104391252
10
10.0
10
71
18
60
31
3
2
63
1.22
104391339--104391565
90
2.6
88
85
10
293
33
9
20
36
1.86
104392729--104392777
25
2.0
26
84
8
66
18
4
8
69
1.30
104392893--104392940
21
2.3
21
82
10
64
39
35
4
20
1.72
104393378--104393444
15
4.5
15
76
12
50
62
2
0
34
1.10
104393832--104393869
19
2.1
18
85
9
51
39
13
2
44
1.57
104409053--104409109
27
2.1
27
86
3
78
57
5
5
31
1.43
104409838--104409890
25
2.2
23
83
12
63
62
3
7
26
1.39
104409880--104409939
23
2.7
23
80
14
72
58
0
8
33
1.28
104409879--104409935
25
2.2
25
87
9
80
57
0
8
33
1.29
104411886--104411910
12
2.1
12
100
0
50
8
8
44
40
1.63
104412216--104412258
15
2.7
15
83
16
52
48
0
0
51
1.00
104412219--104412256
17
2.2
17
86
9
51
52
0
0
47
1.00
104413045--104413078
18
1.9
17
94
5
59
29
5
11
52
1.61
104413217--104413251
17
2.1
17
100
0
70
25
17
17
40
1.90
104419246--104419297
20
2.6
19
82
11
61
61
9
1
26
1.38
104427911--104427982
20
3.7
19
75
16
58
43
1
0
55
1.08
104427911--104427951
20
2.0
21
86
13
59
39
0
0
60
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104432824--104432875
25
2.1
25
85
0
68
55
3
9
30
1.50
104447254--104447293
20
2.0
20
85
9
55
2
17
25
55
1.55
104451670--104451719
23
2.2
23
100
0
100
44
22
0
34
1.53
104451791--104451819
12
2.4
12
100
0
58
24
6
0
68
1.13
104459532--104459567
13
2.8
14
84
16
51
27
25
0
47
1.52
104459519--104459559
18
2.2
19
87
12
59
29
24
0
46
1.53
104459956--104459996
10
4.3
10
81
12
50
31
24
0
43
1.54
104460203--104460252
15
3.4
14
78
8
55
50
8
2
40
1.43
104460987--104461033
15
2.9
15
79
14
58
4
29
10
55
1.53
104461210--104461264
21
2.5
22
72
16
60
65
5
0
29
1.15
104464296--104464336
20
2.0
20
90
0
64
56
2
0
41
1.13
104465108--104465239
51
2.6
51
96
0
237
28
31
25
15
1.95
104466369--104466408
9
4.8
8
88
11
62
62
0
0
37
0.95
104466369--104466408
17
2.4
17
100
0
80
62
0
0
37
0.95
104466709--104466766
29
2.0
29
83
6
73
34
13
10
41
1.79
104467415--104467461
17
2.8
17
90
6
60
31
2
2
63
1.18
104467491--104467555
30
2.2
30
86
8
89
38
3
1
56
1.24
104467484--104467544
20
3.1
19
74
9
59
32
4
1
60
1.28
104467507--104467565
30
2.0
30
86
6
84
38
3
0
57
1.15
104469257--104469407
57
2.7
58
81
12
179
21
28
32
17
1.96
104475027--104475089
31
2.0
31
90
0
99
36
15
6
41
1.73
104477965--104478014
16
3.2
15
78
10
55
22
26
0
52
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104480506--104480530
2
12.5
2
100
0
50
52
0
0
48
1.00
104483612--104483636
12
2.1
12
100
0
50
24
36
24
16
1.94
104483795--104483846
9
5.8
9
95
0
86
38
28
9
23
1.86
104483949--104484008
31
1.9
31
96
0
111
20
1
25
53
1.55
104487842--104487885
19
2.3
19
81
18
56
36
0
4
59
1.18
104488001--104488053
25
2.1
25
82
6
63
56
7
0
35
1.28
104499712--104499745
17
1.9
17
94
5
59
55
0
0
44
0.99
104502119--104502150
15
2.1
16
88
11
50
68
0
0
31
0.90
104504182--104504221
22
1.9
21
90
10
64
67
22
5
5
1.30
104504325--104504361
18
2.1
18
94
0
65
21
21
5
51
1.68
104510907--104510944
14
2.7
15
88
8
53
50
2
5
42
1.39
104521207--104521256
15
3.4
14
79
20
57
28
2
2
68
1.12
104523211--104523237
4
6.8
4
100
0
54
22
0
0
77
0.76
104524051--104524093
3
14.3
3
90
0
68
32
4
0
62
1.15
104525659--104525716
21
2.8
21
83
0
62
22
8
3
65
1.36
104525670--104525720
11
4.8
11
78
7
61
23
7
1
66
1.28
104525658--104525726
11
6.5
11
75
6
52
21
7
4
66
1.34
104534838--104534901
31
2.1
31
84
0
83
57
6
7
28
1.51
104537628--104537674
13
3.7
13
78
13
53
70
2
0
27
0.99
104538692--104538732
22
2.0
22
85
9
59
29
0
7
63
1.21
104544429--104544481
21
2.7
20
88
11
83
32
5
3
58
1.39
104544432--104544499
35
1.9
35
82
5
84
32
5
5
55
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104546004--104546071
30
2.3
30
79
5
75
32
42
16
8
1.79
104546128--104546170
18
2.4
18
84
0
50
18
25
6
48
1.73
104551111--104551140
13
2.3
13
94
0
51
50
6
13
30
1.67
104552626--104552811
59
3.1
58
70
14
189
40
1
6
51
1.37
104552700--104552734
18
2.0
18
94
5
63
42
0
0
57
0.99
104552707--104552752
18
2.8
17
83
9
51
45
0
0
54
0.99
104552719--104552775
26
2.2
25
81
3
69
40
0
3
56
1.17
104552623--104552869
120
2.0
121
95
0
442
40
1
5
52
1.32
104552822--104552857
18
2.0
18
100
0
72
33
0
0
66
0.92
104552826--104552865
18
2.2
18
86
0
53
42
0
0
57
0.98
104553015--104553109
45
2.1
44
86
1
127
34
27
6
31
1.82
104553088--104553141
16
3.4
16
97
0
99
35
35
0
29
1.58
104553581--104553628
20
2.3
21
80
16
55
39
0
10
50
1.37
104553633--104553667
18
2.1
18
89
10
56
51
5
0
42
1.25
104564359--104564383
2
12.5
2
100
0
50
52
0
0
48
1.00
104578969--104579085
58
2.0
58
98
0
225
39
20
13
26
1.90
104585310--104586012
226
3.0
235
88
4
1100
33
14
19
32
1.92
104604548--104604586
20
2.0
20
85
10
53
53
2
7
35
1.43
104610992--104611050
30
1.9
31
83
10
77
20
13
23
42
1.88
104617118--104617164
22
2.2
21
84
3
58
36
21
8
34
1.84
104617135--104617213
19
4.2
19
87
9
117
35
15
10
39
1.81
104617135--104617207
36
2.0
38
91
5
123
35
13
10
39
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104617136--104617223
36
2.4
35
83
14
108
35
14
10
39
1.80
104620386--104620423
13
2.7
14
88
8
51
34
18
2
44
1.64
104620904--104621193
48
6.0
47
84
7
287
31
26
15
27
1.95
104638461--104638489
11
2.6
11
100
0
58
31
10
17
41
1.83
104654977--104655014
10
3.9
10
82
6
51
71
2
0
26
1.00
104655002--104655059
21
2.8
21
76
5
55
53
0
1
44
1.10
104660839--104660875
2
18.5
2
88
0
56
45
0
5
48
1.25
104660839--104660872
12
2.8
12
100
0
68
44
0
5
50
1.26
104672225--104672306
32
2.5
33
80
9
87
19
23
39
18
1.93
104674993--104675022
12
2.4
13
88
11
53
10
13
40
36
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343