genome.fa.s10.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  124  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41470776--41470895	54	2.2	55	93	3	215	21	5	18	55	1.62
41473778--41473944	88	1.9	92	88	7	263	30	30	17	21	1.96
41473771--41473939	46	3.7	46	78	13	181	31	30	16	21	1.95
41473774--41473960	46	4.2	45	69	18	122	31	29	17	22	1.96
41475595--41476019	27	15.7	27	89	0	589	30	22	6	39	1.80
41475890--41476084	27	7.2	27	80	3	108	34	21	7	36	1.81
41476068--41476308	27	9.2	27	81	8	257	36	18	19	24	1.95
41476041--41476310	54	5.1	54	77	11	192	37	20	18	24	1.94
41476183--41476255	19	3.4	19	67	25	56	35	21	21	20	1.96
41476187--41476280	46	2.0	46	100	0	188	35	21	21	22	1.96
41476155--41476309	73	2.1	73	84	1	204	35	20	20	23	1.96
41476512--41476606	25	3.8	25	85	0	100	27	23	21	28	1.99
41476562--41476633	25	3.0	24	80	13	76	29	22	22	26	1.99
41476827--41476910	29	2.9	29	74	15	75	29	20	23	26	1.99
41494261--41494457	54	3.6	54	81	4	236	35	17	24	22	1.95
41496599--41496628	16	1.9	15	93	6	51	36	20	0	43	1.52
41496772--41496886	42	2.8	42	90	1	169	36	25	18	20	1.94
41500938--41501070	50	2.7	50	83	1	160	28	28	18	24	1.98
41506375--41506420	11	4.5	11	78	13	53	34	13	19	32	1.90
41506369--41506420	9	5.2	10	77	13	54	34	11	19	34	1.88
41506496--41506541	25	1.9	24	82	8	58	26	21	23	28	1.99
41510635--41510667	10	3.2	10	95	4	57	27	0	42	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41511409--41511521	27	4.2	27	82	0	127	26	20	9	43	1.83
41511526--41511721	27	7.3	27	86	0	248	35	19	19	25	1.95
41511921--41512001	27	3.0	28	85	7	96	19	22	20	37	1.95
41512319--41512377	27	2.2	27	84	6	75	20	23	18	37	1.94
41512502--41512629	6	20.8	6	78	16	138	18	17	14	49	1.80
41512495--41512570	26	3.0	25	88	5	100	18	22	13	46	1.83
41512502--41512629	30	4.4	30	87	9	185	18	17	14	49	1.80
41512538--41512650	30	3.7	30	83	8	131	19	17	14	48	1.81
41518030--41518202	46	3.8	45	77	13	190	22	20	27	29	1.99
41518027--41518197	93	1.8	93	93	0	297	22	21	28	28	1.99
41522472--41522645	49	3.5	49	87	4	269	25	17	28	28	1.98
41522464--41522645	99	1.8	99	97	0	346	25	18	28	27	1.98
41525347--41525385	15	2.5	15	91	4	60	15	12	15	56	1.68
41527643--41527888	49	4.9	50	80	2	280	27	18	26	27	1.98
41529735--41529769	18	1.9	18	88	0	52	42	8	17	31	1.79
41532259--41532711	131	3.5	133	76	4	413	34	18	18	28	1.95
41539428--41539486	29	2.0	29	100	0	118	27	13	16	42	1.86
41541766--41541868	39	2.6	38	76	11	109	26	23	24	26	2.00
41541766--41541876	40	2.8	38	76	10	116	24	22	24	28	1.99
41546657--41546801	40	3.6	40	85	4	193	25	24	26	23	2.00
41554668--41554812	40	3.6	40	85	4	193	25	24	26	23	2.00
41572650--41572823	49	3.5	49	84	1	222	32	27	14	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41575772--41575805	13	2.6	13	95	0	59	8	29	32	29	1.87
41578554--41578652	27	3.6	27	85	9	121	40	21	6	32	1.77
41579065--41579157	27	3.5	26	72	8	71	22	18	20	38	1.93
41579146--41579235	32	2.8	32	78	6	101	27	20	20	32	1.97
41579146--41579247	32	3.2	30	76	13	89	27	20	20	31	1.98
41581806--41581956	28	5.4	28	90	1	205	26	11	27	33	1.92
41592457--41592728	45	6.1	45	90	4	385	27	29	19	23	1.98
41594942--41595169	40	5.7	40	95	1	345	22	20	28	28	1.99
41597416--41597588	46	3.7	46	75	14	176	23	21	26	28	1.99
41597413--41597583	93	1.8	93	91	2	281	22	21	27	28	1.99
41600509--41600552	15	2.9	15	80	12	54	11	15	15	56	1.66
41602759--41602975	40	5.5	40	87	4	291	22	23	28	25	1.99
41602759--41602975	79	2.7	79	88	4	296	22	23	28	25	1.99
41606084--41606256	46	3.7	46	75	13	183	21	19	27	30	1.98
41606081--41606251	93	1.8	93	92	0	288	21	19	28	29	1.98
41609878--41610001	28	4.5	28	89	5	182	33	28	11	26	1.91
41609880--41610001	54	2.2	54	89	4	183	34	27	10	27	1.90
41609877--41610026	28	5.4	28	84	6	155	34	28	11	26	1.91
41613238--41613307	25	2.8	25	95	0	122	27	21	24	27	1.99
41613510--41613748	27	8.9	27	87	0	327	24	20	18	35	1.95
41613739--41613893	27	5.7	28	78	6	149	26	7	23	43	1.79
41613779--41613961	54	3.4	54	78	4	154	33	6	21	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41613739--41613893	81	1.9	81	94	0	274	26	7	23	43	1.79
41613895--41614066	27	6.4	27	85	2	220	42	6	20	29	1.79
41613752--41613920	81	2.1	81	83	2	205	29	7	21	42	1.79
41613860--41614066	54	3.8	54	88	0	252	40	6	20	32	1.78
41613895--41614096	81	2.5	81	81	3	210	40	6	22	31	1.79
41618205--41618253	16	3.2	16	80	19	68	44	10	12	32	1.75
41618425--41618477	22	2.4	22	83	0	70	22	32	18	26	1.97
41618761--41618813	26	2.0	26	92	0	88	33	11	15	39	1.83
41626578--41626650	36	2.0	36	97	0	137	23	30	15	31	1.95
41629154--41629202	25	2.0	25	100	0	98	40	24	10	24	1.86
41638443--41638515	24	2.9	25	79	6	76	35	20	19	24	1.95
41640081--41640192	43	2.6	42	83	2	143	28	24	16	31	1.96
41642495--41642679	40	4.7	40	82	6	207	25	28	21	24	1.99
41642495--41642679	79	2.3	80	81	7	198	25	28	21	24	1.99
41646779--41646848	27	2.6	27	95	2	113	31	28	12	27	1.93
41646779--41646876	28	3.5	28	90	2	135	31	28	13	26	1.94
41654860--41654929	27	2.6	27	95	2	113	31	28	12	27	1.93
41654860--41654957	28	3.5	28	90	2	135	31	28	13	26	1.94
41661852--41661881	15	1.9	16	93	6	53	40	26	0	33	1.57
41667279--41667427	26	5.8	26	90	2	221	26	22	22	28	1.99
41675276--41675350	20	3.8	20	87	6	102	37	9	17	36	1.82
41675298--41675350	11	5.2	11	69	17	51	37	11	18	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41675400--41675544	26	5.7	26	85	3	195	26	21	22	29	1.99
41675400--41675544	51	2.8	52	89	4	206	26	21	22	29	1.99
41679787--41679951	90	1.8	89	94	1	294	35	26	5	33	1.79
41682369--41682495	45	2.9	44	80	10	136	24	22	28	24	2.00
41692074--41692131	30	1.9	31	86	10	84	36	13	22	27	1.92
41692758--41693263	47	10.8	46	76	8	242	34	16	25	23	1.95
41692759--41693265	234	2.2	234	93	0	854	34	16	25	23	1.95
41693228--41693424	54	3.6	54	82	4	245	36	17	24	21	1.95
41695861--41695921	30	2.0	30	83	0	77	29	24	6	39	1.80
41707518--41707724	53	3.8	53	76	8	193	38	17	22	20	1.93
41710643--41710722	37	2.2	37	88	4	117	28	30	16	25	1.96
41710840--41711360	47	11.0	47	94	0	862	28	29	9	32	1.88
41715172--41715241	25	2.8	24	85	8	79	22	28	22	25	1.99
41715197--41715268	25	3.0	23	84	10	81	27	22	23	26	1.99
41715389--41715480	41	2.2	42	90	1	141	32	14	19	33	1.92
41715502--41715616	31	3.8	31	96	2	207	28	17	26	27	1.97
41716355--41716394	16	2.5	16	100	0	80	35	12	0	52	1.39
41723980--41724183	53	3.8	53	75	10	182	38	18	23	20	1.93
41740065--41740119	28	1.9	28	85	10	76	20	43	20	16	1.88
41742426--41742456	16	1.9	16	93	0	53	35	22	0	41	1.54
41742423--41742462	20	2.0	20	85	0	53	37	22	0	40	1.54
41742695--41742891	108	1.8	110	86	2	290	23	26	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41742648--41742902	55	4.8	54	77	9	206	21	25	16	36	1.94
41761440--41761606	46	3.6	47	76	9	141	27	19	27	25	1.99
41763605--41763734	42	3.2	40	82	8	163	34	26	14	23	1.94
41763605--41763747	40	3.5	40	81	7	153	34	26	14	23	1.94
41768727--41768781	26	2.1	26	86	6	76	52	5	1	40	1.35
41773742--41773776	14	2.4	14	90	4	52	48	0	0	51	1.00
41776110--41776192	28	3.0	28	96	1	150	27	13	26	32	1.93
41793513--41793961	225	2.0	224	93	0	772	26	21	19	32	1.97
41794403--41794452	23	2.2	23	85	7	66	34	28	12	26	1.92
41796502--41796544	16	2.7	16	82	7	52	48	25	0	25	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343