genome.fa.s10.2.7.7.80.10.50.1000.307.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  307  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99890073--99890097	11	2.3	11	100	0	50	16	12	36	36	1.85
99896667--99896714	25	2.0	24	83	4	60	22	6	8	62	1.46
99898287--99898367	41	2.0	41	83	9	103	25	3	14	55	1.56
99898667--99898731	28	2.3	27	79	7	76	61	0	9	29	1.27
99911047--99911079	4	8.2	4	100	0	66	24	24	0	51	1.48
99911262--99911314	22	2.4	22	75	6	54	15	9	15	60	1.58
99913629--99913709	39	2.1	39	100	0	162	43	11	17	28	1.83
99918506--99918531	13	2.0	13	100	0	52	0	0	23	76	0.78
99920659--99920699	11	3.7	11	80	0	55	19	14	9	56	1.66
99920903--99920937	12	2.9	12	91	0	52	68	0	0	31	0.90
99926320--99926390	21	3.5	20	80	18	67	21	16	15	46	1.84
99926364--99926460	42	2.3	44	80	7	103	19	19	15	45	1.86
99927784--99927858	16	5.1	14	70	12	53	37	4	29	29	1.75
99927784--99927873	44	2.0	44	100	0	180	35	4	28	31	1.77
99942126--99942166	3	13.7	3	90	10	66	31	0	0	68	0.90
99942755--99942852	50	2.0	50	93	0	169	33	13	18	34	1.89
99946200--99946274	30	2.5	29	81	10	87	29	4	8	58	1.45
99952541--99952589	24	2.0	24	100	0	98	36	0	34	28	1.58
99957274--99957306	14	2.4	14	90	10	50	81	0	0	18	0.68
99959616--99959663	5	10.6	5	77	20	52	58	0	2	39	1.10
99959628--99959666	9	4.3	9	96	0	69	61	0	0	38	0.96
99959616--99959666	18	2.9	18	88	2	77	60	0	1	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99973267--99973303	4	9.2	4	100	0	74	51	24	0	24	1.49
99988557--99988586	15	2.0	15	100	0	60	40	6	0	53	1.27
99988716--99988763	26	2.0	25	88	12	73	62	0	2	35	1.07
99996454--99996682	126	1.8	126	90	1	370	35	16	18	29	1.92
99997208--99997249	18	2.3	18	88	8	59	61	11	2	23	1.42
99997268--99997389	3	40.3	3	76	9	97	63	1	1	32	1.13
99997268--99997389	17	7.6	16	75	12	83	63	1	1	32	1.13
99997268--99997383	20	5.7	20	72	9	99	63	1	1	32	1.14
99997267--99997387	40	3.0	43	74	14	130	63	2	1	32	1.17
99997770--99997819	24	2.1	24	96	0	91	22	4	50	24	1.66
99997813--99997879	13	4.8	13	75	13	53	17	0	46	35	1.49
99997798--99997855	17	3.6	17	75	17	70	18	0	50	31	1.48
99997798--99997868	30	2.4	30	92	0	115	18	0	49	32	1.48
99998166--99998474	133	2.3	134	85	4	428	27	21	20	30	1.98
99998514--99999322	85	9.6	85	94	0	1394	19	27	24	28	1.99
100003623--100003669	19	2.5	20	86	6	62	38	10	25	25	1.88
100004993--100005226	126	1.9	126	93	0	405	38	17	17	27	1.91
100005580--100005611	2	16.5	2	93	6	57	53	0	0	46	1.00
100005757--100005798	18	2.3	18	84	8	50	59	11	4	23	1.51
100005817--100005968	3	50.7	3	70	12	82	63	2	3	30	1.24
100005817--100005870	14	3.8	14	79	13	56	70	0	0	29	0.88
100005817--100005864	20	2.4	21	86	6	64	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100005876--100005968	17	5.8	16	68	20	68	62	3	4	30	1.30
100006325--100006374	24	2.1	24	96	0	91	22	4	50	24	1.66
100006353--100006410	17	3.6	17	71	17	61	18	1	48	31	1.59
100006357--100006421	30	2.2	30	85	0	85	18	1	47	32	1.58
100007617--100007708	41	2.2	41	96	0	175	36	0	9	53	1.34
100009832--100010245	3	133.7	3	68	11	133	57	4	8	29	1.48
100013107--100013229	47	2.6	48	85	2	158	30	28	11	29	1.92
100013248--100013400	31	5.0	31	92	1	245	28	28	16	26	1.97
100013440--100013601	50	3.3	50	86	6	233	25	22	14	37	1.92
100013411--100013601	104	1.9	100	87	7	280	26	21	15	36	1.94
100016746--100016800	28	1.9	28	82	10	67	60	7	7	25	1.49
100017249--100017292	3	14.0	3	86	9	61	65	0	0	34	0.93
100017247--100017289	10	4.3	10	91	5	61	65	0	0	34	0.93
100017750--100017801	24	2.2	23	82	3	59	51	0	48	0	1.00
100019186--100019351	72	2.3	72	80	9	187	36	16	16	30	1.91
100019239--100020139	127	7.1	127	96	1	1623	34	20	16	28	1.94
100019239--100020139	380	2.4	381	95	1	1632	34	20	16	28	1.94
100030822--100030867	22	2.1	22	88	8	67	65	0	0	34	0.93
100030824--100030866	3	14.0	3	81	13	52	67	0	0	32	0.91
100031323--100031374	24	2.2	23	82	3	59	51	0	48	0	1.00
100032061--100032094	17	2.0	17	100	0	68	5	0	41	52	1.25
100034232--100034275	14	3.1	14	76	3	52	40	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100034245--100034293	20	2.5	19	84	12	64	36	6	0	57	1.24
100040265--100040299	14	2.3	16	90	9	56	17	2	0	80	0.84
100047680--100047731	18	2.9	18	77	11	61	57	7	3	30	1.45
100049363--100050275	176	5.2	176	92	0	1459	27	22	18	32	1.97
100049553--100049644	43	2.1	45	85	4	125	28	26	14	31	1.94
100049729--100049989	43	5.9	43	68	14	131	26	23	16	33	1.95
100050292--100050330	16	2.4	16	86	0	51	10	30	25	33	1.89
100056232--100056319	43	2.0	43	95	0	158	31	20	18	29	1.96
100058773--100058812	19	2.1	19	86	9	55	42	12	20	25	1.86
100061405--100061448	22	2.0	22	100	0	88	31	27	22	18	1.97
100062759--100062892	41	3.3	41	76	9	148	38	20	20	20	1.94
100062743--100062892	41	3.7	40	73	10	135	36	20	22	21	1.96
100062963--100063075	36	3.0	37	88	6	156	24	19	24	30	1.98
100062869--100063075	76	2.6	78	81	7	233	24	20	23	31	1.98
100062869--100063075	40	5.2	40	77	10	201	24	20	23	31	1.98
100063456--100063507	21	2.4	21	78	9	52	25	0	26	48	1.52
100063553--100063629	7	10.7	7	71	15	59	20	0	42	36	1.53
100063590--100063655	7	9.3	7	81	3	51	24	0	33	42	1.55
100065804--100065851	23	2.0	24	92	4	80	27	6	27	39	1.80
100068714--100068738	10	2.5	10	100	0	50	0	16	32	52	1.44
100068913--100068955	22	1.9	23	85	4	61	58	4	0	37	1.19
100068990--100069131	43	3.3	43	88	0	212	21	18	32	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100069765--100069842	36	2.2	35	81	2	84	61	5	3	29	1.35
100071005--100071072	30	2.3	30	82	5	75	47	5	19	27	1.72
100071015--100071072	29	2.0	29	82	3	71	48	3	20	27	1.66
100077423--100077504	26	3.2	26	96	0	146	32	7	24	35	1.83
100079102--100079242	27	5.2	27	80	14	166	19	25	21	33	1.97
100079099--100079242	54	2.7	54	91	2	218	18	25	22	33	1.97
100079102--100079259	81	2.0	80	82	10	198	20	25	20	33	1.97
100080228--100080341	27	4.3	26	74	14	90	27	5	2	64	1.28
100080489--100080539	18	2.8	18	82	11	59	29	15	3	50	1.62
100080528--100080602	3	26.0	3	70	12	50	26	6	4	62	1.38
100080528--100080576	13	3.7	13	81	13	55	28	6	2	63	1.30
100080528--100080606	23	3.6	22	78	13	81	26	6	3	63	1.36
100080764--100080942	3	59.0	3	65	17	68	29	8	2	59	1.40
100083188--100083318	38	3.4	38	80	5	129	25	19	25	29	1.98
100083896--100083942	24	2.0	24	91	0	76	40	0	21	38	1.53
100084805--100084881	14	5.0	15	71	20	52	42	14	9	33	1.77
100084821--100084860	20	2.0	20	90	0	62	50	12	10	27	1.72
100084809--100084875	34	1.9	35	90	3	109	46	13	8	31	1.74
100089998--100090079	40	2.0	40	97	0	155	29	17	17	36	1.92
100090872--100090949	37	2.1	37	95	0	138	50	12	14	23	1.77
100096567--100096742	46	3.8	46	76	11	180	21	21	28	28	1.98
100096564--100096735	93	1.8	93	90	2	274	21	21	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100099851--100099943	46	2.0	46	100	0	186	36	25	8	29	1.86
100107172--100107236	17	3.8	17	76	6	69	32	21	21	24	1.98
100109479--100109552	25	3.2	25	67	21	79	25	4	14	55	1.57
100109477--100109565	44	2.0	44	100	0	178	24	4	13	57	1.55
100109681--100109809	50	2.5	51	91	2	206	35	17	22	24	1.95
100109787--100109902	31	3.7	31	83	4	162	25	18	27	28	1.98
100109920--100110133	47	4.7	46	77	10	161	28	14	26	30	1.95
100110002--100110133	49	2.9	48	82	8	159	28	14	27	30	1.95
100110066--100110160	42	2.3	42	85	3	120	32	13	25	28	1.94
100118049--100118136	43	2.0	43	100	0	176	27	11	21	39	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343