Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  12  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4123504--4123542
18
2.2
18
85
0
51
28
0
0
71
0.86
4127704--4127778
24
3.0
26
75
11
84
33
16
17
33
1.92
4127975--4128011
19
1.9
19
89
10
58
32
8
0
59
1.27
4138925--4138981
24
2.4
24
73
5
62
63
5
1
29
1.27
4147663--4147713
3
17.3
3
75
4
50
35
1
3
58
1.28
4147838--4147873
3
12.0
3
100
0
72
33
0
0
66
0.92
4159867--4161502
88
18.6
88
71
8
834
27
17
25
29
1.97
4159862--4160877
132
7.7
132
82
8
1153
27
17
25
29
1.97
4160500--4161618
573
2.0
572
92
1
1864
27
17
25
29
1.97
4161036--4161484
132
3.4
132
94
0
765
26
16
27
29
1.97
4161520--4161803
95
3.0
95
94
1
487
28
20
22
28
1.99
4163289--4163339
3
17.3
3
75
4
50
35
1
3
58
1.28
4163464--4163493
3
10.0
3
100
0
60
33
0
0
66
0.92
4165595--4165754
80
2.0
80
95
0
284
35
20
10
34
1.86
4167849--4167888
20
2.0
20
85
0
53
25
27
12
35
1.92
4168172--4168213
15
2.6
16
82
17
52
69
0
0
30
0.89
4173930--4174001
22
3.3
22
70
16
69
45
1
1
51
1.18
4182294--4182384
31
2.9
31
75
16
89
28
2
3
65
1.20
4189166--4189226
29
2.1
29
87
0
86
50
11
6
31
1.64
4192731--4192831
31
3.3
31
91
2
152
48
8
11
30
1.71
4201120--4201152
8
4.2
8
84
7
50
87
0
12
0
0.53
4201113--4201147
10
3.4
10
92
4
52
88
0
8
2
0.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4201113--4201149
15
2.5
15
91
8
58
89
0
8
2
0.58
4206400--4206442
2
21.5
2
100
0
86
51
0
48
0
1.00
4209253--4209440
72
2.6
72
98
0
360
42
23
6
27
1.79
4209441--4209478
3
12.7
3
100
0
76
68
0
0
31
0.90
4213688--4213875
72
2.6
72
98
0
360
42
23
6
27
1.79
4213876--4213913
3
12.7
3
100
0
76
68
0
0
31
0.90
4222100--4222133
4
8.5
4
93
0
50
0
0
17
82
0.67
4231758--4231868
37
2.9
39
74
19
110
52
0
12
34
1.46
4234462--4234495
12
2.8
12
90
0
50
67
0
0
32
0.91
4235420--4235487
9
6.4
10
72
21
50
63
2
5
27
1.32
4235441--4235483
22
1.9
23
86
13
63
60
2
6
30
1.35
4235614--4235657
22
2.0
22
87
12
65
29
4
0
65
1.12
4237845--4237885
21
2.0
21
85
0
55
34
4
0
60
1.18
4237858--4237919
23
2.5
26
76
15
67
43
1
0
54
1.09
4237866--4237917
23
2.2
24
86
6
70
46
1
0
51
1.12
4240426--4240477
22
2.4
23
81
9
65
28
3
7
59
1.43
4244843--4244883
21
2.0
21
90
0
64
29
21
29
19
1.98
4272729--4272899
85
2.0
85
95
0
306
38
22
7
32
1.81
4277527--4277551
11
2.3
11
100
0
50
44
0
16
40
1.47
4282389--4282517
50
2.5
51
88
5
190
35
17
21
25
1.95
4282495--4282685
31
6.2
31
92
0
301
29
18
25
26
1.98
4282707--4282821
47
2.4
47
85
2
142
30
14
25
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4282792--4282873
42
2.0
42
85
0
110
34
14
20
30
1.93
4284120--4284505
133
2.9
132
82
8
446
34
18
17
28
1.94
4287221--4287628
133
3.1
133
92
0
647
29
24
18
27
1.98
4294603--4294658
20
2.6
21
81
10
69
57
5
3
33
1.39
4294610--4294659
23
2.3
22
86
10
68
58
6
2
34
1.34
4294487--4294798
157
2.0
153
79
12
330
55
7
4
33
1.48
4294618--4294710
25
3.7
25
72
14
77
54
5
5
34
1.46
4294762--4294819
21
2.8
21
87
7
75
56
6
1
34
1.36
4294808--4294849
3
14.0
3
94
0
75
64
0
0
35
0.94
4294931--4294976
17
2.9
16
78
15
51
56
4
2
36
1.31
4294924--4295082
80
2.0
79
80
12
175
55
5
5
33
1.45
4295047--4295108
23
2.5
25
77
20
67
53
4
6
35
1.48
4295188--4295280
46
2.0
47
83
10
120
59
5
6
29
1.45
4295263--4295299
14
2.5
15
80
20
51
59
8
2
29
1.40
4295313--4295356
23
1.9
23
90
0
70
59
4
4
31
1.38
4295465--4295548
34
2.4
35
76
11
93
59
0
5
34
1.22
4296124--4296176
20
2.6
20
75
3
61
16
3
1
77
1.01
4297213--4297598
85
4.4
85
86
6
483
36
19
14
29
1.92
4297213--4297598
174
2.2
171
84
7
485
36
19
14
29
1.92
4303282--4303577
46
6.9
39
82
15
290
36
15
24
22
1.94
4303321--4303621
46
6.7
46
88
6
422
37
15
24
21
1.93
4303272--4303577
84
3.5
84
93
3
477
36
15
24
23
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4303908--4303940
17
2.0
17
88
5
50
57
0
9
33
1.30
4309638--4309682
22
2.0
22
91
0
72
44
4
22
28
1.72
4315497--4315540
24
2.0
23
86
13
65
50
0
2
47
1.13
4315592--4315630
16
2.5
15
84
12
51
58
0
0
41
0.98
4316148--4316190
22
2.0
21
86
8
61
53
6
4
34
1.49
4331027--4331075
15
3.1
15
76
23
55
67
0
0
32
0.91
4331026--4331073
18
2.9
17
77
22
57
68
0
0
31
0.90
4341041--4341080
20
2.0
20
85
9
55
72
2
0
25
0.97
4346105--4346151
16
2.7
17
77
12
51
55
0
2
42
1.12
4348389--4348662
46
6.0
46
95
0
449
39
14
23
22
1.91
4350150--4350327
47
3.8
48
84
3
191
36
26
13
23
1.92
4350157--4350327
94
1.8
94
83
2
227
36
26
13
23
1.92
4353588--4353625
20
2.0
20
89
5
60
57
2
0
39
1.12
4359420--4359490
20
3.4
21
77
13
67
33
0
8
57
1.29
4361637--4361744
46
2.3
46
80
3
128
43
12
22
21
1.86
4364218--4364276
25
2.3
27
85
5
77
57
3
0
38
1.15
4366779--4366841
31
2.0
31
84
0
81
22
7
11
58
1.58
4370399--4370449
17
2.8
17
82
14
50
54
3
1
39
1.30
4384612--4384656
4
11.2
4
100
0
90
24
0
24
51
1.49
4384968--4385008
21
2.0
21
85
9
57
29
2
12
56
1.49
4404518--4404790
90
3.0
90
93
0
465
40
19
25
15
1.90
4406158--4406188
15
2.1
15
100
0
62
38
19
6
35
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4406466--4406517
26
2.0
26
100
0
104
26
23
19
30
1.98
4406617--4406643
14
1.9
14
100
0
54
59
0
14
25
1.36
4408422--4408451
14
2.1
14
93
0
51
30
20
13
36
1.90
4411411--4411456
19
2.3
20
79
20
53
34
0
4
60
1.16
4418208--4418239
15
2.0
17
88
11
50
65
0
0
34
0.93
4424436--4424504
31
2.3
31
87
9
99
39
0
7
53
1.29
4424681--4424745
30
2.2
29
84
10
80
58
6
0
35
1.23
4425433--4425729
151
2.0
151
85
1
407
21
21
26
30
1.98
4426443--4426590
74
2.0
74
97
0
278
28
14
18
39
1.89
4427085--4427119
5
6.8
5
90
3
52
80
0
20
0
0.72
4438180--4438241
25
2.5
24
72
10
63
30
17
22
29
1.97
4441738--4441786
26
2.0
25
84
8
64
75
2
10
12
1.13
4441732--4441785
13
4.3
12
77
9
54
75
1
11
11
1.11
4442902--4442960
29
2.0
29
96
0
109
37
27
15
20
1.92
4462524--4462740
106
2.0
106
100
0
434
32
11
25
30
1.92
4469818--4469854
17
2.2
17
100
0
74
78
5
0
16
0.93
4470711--4471131
44
9.6
44
70
12
249
28
22
19
29
1.98
4470664--4471138
175
2.7
174
92
1
790
28
21
18
31
1.97
4484664--4484700
17
2.2
17
100
0
74
78
5
0
16
0.93
4490867--4490913
25
1.9
24
91
4
76
21
10
14
53
1.71
4501018--4501104
44
2.0
44
84
6
113
39
9
5
45
1.60
4503388--4503417
10
3.0
10
95
0
51
26
0
13
60
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4504849--4504889
19
2.3
19
88
12
61
31
2
0
65
1.05
4507281--4507310
14
2.1
14
100
0
60
66
0
0
33
0.92
4507302--4507333
11
2.9
11
100
0
64
65
0
0
34
0.93
4507285--4507341
11
4.9
11
86
6
60
64
0
1
33
1.04
4509404--4509437
17
2.0
17
100
0
68
29
5
29
35
1.81
4521318--4521360
20
2.1
21
83
12
54
65
6
0
27
1.18
4523862--4523920
28
2.2
25
82
14
66
38
5
5
50
1.46
4532576--4532625
20
2.5
21
78
15
52
4
16
4
76
1.10
4540456--4540546
30
3.1
29
78
9
80
32
8
15
42
1.78
4540475--4540551
26
2.8
26
78
13
75
29
10
12
46
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343