genome.fa.s10.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  149  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49596140--49596252	46	2.4	49	77	7	126	23	23	17	34	1.96
49596431--49596566	71	1.9	71	96	0	254	29	6	21	42	1.78
49598622--49598871	40	6.3	39	87	4	315	24	26	21	27	1.99
49606248--49606506	40	6.6	40	90	4	343	23	27	23	26	2.00
49609069--49609143	27	2.8	28	81	4	82	38	25	9	26	1.86
49609162--49609356	27	7.2	27	84	5	223	31	22	6	40	1.79
49609162--49609356	54	3.6	54	85	2	266	31	22	6	40	1.79
49609162--49609384	81	2.7	81	83	3	243	30	21	8	40	1.82
49609593--49609644	27	2.0	26	84	3	68	17	26	21	34	1.95
49613957--49614086	47	2.8	47	89	2	181	24	16	26	33	1.96
49615932--49616125	68	2.9	64	79	9	167	24	28	17	29	1.97
49630743--49630874	23	5.7	23	69	14	92	23	22	20	33	1.97
49630799--49630893	45	2.1	45	86	0	136	26	22	18	32	1.97
49632950--49633001	24	2.1	25	82	13	63	30	7	11	50	1.67
49636889--49636937	24	2.0	24	100	0	98	30	20	0	48	1.50
49638591--49638653	14	4.4	14	78	18	67	47	4	0	47	1.23
49650752--49650805	25	2.2	25	77	6	58	3	31	0	64	1.11
49654674--49654746	14	5.1	13	74	22	58	45	2	0	52	1.15
49654651--49654726	15	5.2	15	74	22	65	47	1	0	51	1.09
49654698--49654739	20	2.1	20	86	8	59	42	2	0	54	1.13
49657482--49657699	40	5.5	40	87	2	289	24	23	26	24	2.00
49665745--49665960	40	5.4	40	85	2	267	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49667140--49667186	20	2.3	20	88	0	67	19	12	31	36	1.89
49668820--49669011	105	1.9	103	85	5	271	38	5	18	38	1.74
49669837--49670001	43	3.8	42	80	7	145	23	18	25	32	1.97
49669884--49669978	42	2.2	42	86	1	136	25	17	25	31	1.97
49671747--49671929	49	3.7	49	84	5	260	30	26	18	24	1.98
49671749--49671934	100	1.9	100	96	0	345	30	26	18	24	1.98
49676537--49676636	34	2.9	35	78	14	109	30	23	23	24	1.99
49679615--49681515	844	2.3	844	98	0	3658	34	24	12	28	1.92
49681954--49682064	6	17.8	6	70	17	75	48	13	18	19	1.80
49681954--49682064	31	3.5	31	91	1	159	48	13	18	19	1.80
49681997--49682053	19	3.4	19	64	31	56	47	15	17	19	1.83
49682201--49682302	27	3.8	26	85	5	114	36	21	23	18	1.95
49682461--49682525	22	3.0	22	80	8	78	33	23	23	20	1.97
49682970--49683030	27	2.3	27	94	0	104	21	22	22	32	1.98
49682952--49683048	27	3.6	27	84	4	99	25	23	18	31	1.97
49683855--49684006	37	4.1	37	89	0	223	25	32	20	21	1.98
49684169--49684730	47	12.0	47	88	0	809	27	29	12	31	1.92
49688620--49688967	40	8.8	40	90	1	477	27	29	20	22	1.98
49688821--49688887	23	3.2	23	60	24	56	26	25	20	26	1.99
49688618--49688971	120	3.0	119	90	2	550	27	29	20	22	1.99
49690241--49690384	71	2.0	72	91	1	236	26	31	19	22	1.97
49690241--49690383	37	4.0	36	90	5	218	25	32	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49690546--49690868	47	7.0	47	86	2	447	27	29	11	32	1.91
49690538--49690847	94	3.3	94	95	2	522	26	29	11	32	1.92
49694754--49695105	40	8.9	40	89	1	467	27	29	20	22	1.98
49694754--49695105	120	3.0	120	89	0	537	27	29	20	22	1.98
49694955--49695021	23	3.2	23	60	24	56	26	25	20	26	1.99
49696380--49696525	37	3.9	37	88	0	211	25	31	19	23	1.98
49696380--49696524	74	2.0	74	91	0	236	24	31	19	24	1.98
49696688--49697249	47	12.0	47	88	0	809	27	28	11	32	1.92
49701109--49701248	27	5.2	27	79	8	115	27	13	20	38	1.90
49701253--49701420	27	6.3	27	84	4	196	40	7	22	29	1.81
49701253--49701408	54	2.9	53	89	1	240	40	5	23	30	1.78
49701424--49701515	26	3.5	26	76	2	94	27	9	19	43	1.82
49703463--49703497	18	1.9	18	88	11	54	54	11	11	22	1.68
49703480--49703582	31	3.3	31	86	1	134	52	12	14	20	1.74
49703719--49703820	27	3.8	26	84	5	114	36	19	23	20	1.95
49703979--49704043	22	3.0	22	80	8	78	33	23	23	20	1.97
49704397--49704762	27	13.6	27	84	2	405	26	17	20	34	1.95
49704666--49704775	27	4.1	27	75	15	75	28	10	23	37	1.89
49704767--49704922	54	2.9	53	83	4	190	38	5	23	32	1.77
49704771--49704925	81	1.9	80	87	6	224	38	5	23	32	1.77
49704767--49704936	27	6.3	27	82	10	170	37	6	24	31	1.81
49704918--49704975	26	2.2	26	81	3	62	32	13	13	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49704767--49704938	80	2.1	81	84	7	199	37	6	23	31	1.82
49707827--49707875	25	2.0	25	87	0	71	36	22	14	26	1.92
49707906--49707959	11	5.4	10	78	12	58	35	11	18	35	1.86
49708271--49708353	31	2.7	31	94	3	143	32	16	26	24	1.96
49709060--49709103	22	2.0	22	86	0	61	54	2	0	43	1.12
49709210--49709281	36	2.0	36	97	0	135	25	26	9	38	1.86
49712999--49713060	31	2.0	32	87	3	90	20	24	19	35	1.96
49718162--49718337	40	4.4	40	91	3	259	23	22	27	26	1.99
49723636--49723694	27	2.2	26	84	3	73	20	23	20	35	1.96
49733788--49733823	18	1.9	19	88	5	56	55	8	0	36	1.30
49734625--49734668	22	2.0	22	86	0	61	52	4	0	43	1.22
49739266--49739405	40	3.5	39	84	3	154	41	18	22	17	1.90
49739531--49739591	27	2.3	27	85	5	79	9	37	19	32	1.85
49739798--49739845	25	1.9	25	100	0	96	33	8	0	58	1.28
49742109--49742175	28	2.4	28	89	0	98	28	26	13	31	1.94
49743985--49744152	46	3.6	46	80	10	207	19	22	30	27	1.98
49743981--49744153	93	1.9	93	95	0	310	19	21	31	27	1.98
49746158--49746270	31	3.7	31	86	3	160	30	24	15	29	1.96
49746294--49746385	42	2.2	42	98	0	175	32	20	15	31	1.94
49746533--49746601	25	2.8	25	88	0	93	26	23	24	26	2.00
49747412--49747476	27	2.4	27	79	5	69	21	23	18	36	1.95
49747434--49747485	27	1.9	28	84	7	72	17	21	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49747534--49747663	27	4.7	27	77	11	102	31	5	19	43	1.73
49747535--49747691	54	2.9	55	79	4	165	31	6	19	43	1.76
49747646--49747719	27	2.8	26	79	6	85	28	13	18	39	1.89
49747721--49748070	27	12.9	27	88	2	405	40	5	22	31	1.78
49747628--49748096	54	8.7	54	80	5	210	37	7	21	33	1.81
49747721--49748082	81	4.4	81	83	2	456	40	5	23	30	1.78
49752127--49752190	25	2.6	25	97	0	119	32	14	28	25	1.94
49760306--49760384	29	2.7	30	78	3	74	26	31	13	27	1.94
49760287--49760395	58	1.9	57	81	5	130	27	30	12	29	1.93
49760619--49760653	16	2.2	16	89	0	52	11	22	17	48	1.79
49763416--49763451	18	2.0	18	88	0	54	19	22	11	47	1.80
49764271--49764337	34	2.0	34	85	5	91	19	23	25	31	1.98
49767232--49767438	71	2.9	72	76	4	211	34	5	11	48	1.64
49767232--49767453	72	3.1	72	76	3	232	33	6	11	47	1.66
49768351--49768384	13	2.4	14	85	14	52	50	0	14	35	1.44
49768358--49768384	13	2.1	13	100	0	54	51	0	11	37	1.37
49768437--49768574	9	15.6	9	77	7	104	48	16	1	33	1.55
49768435--49768574	54	2.7	52	86	4	208	48	16	1	33	1.55
49772423--49772483	30	2.0	30	83	0	77	31	22	8	37	1.84
49773489--49773688	27	7.4	27	85	2	249	29	26	7	38	1.82
49773489--49773688	81	2.5	81	91	0	310	29	26	7	38	1.82
49773687--49773869	27	6.8	27	83	6	212	42	19	7	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49773678--49773842	53	3.1	53	88	1	222	40	20	7	31	1.80
49773687--49773869	80	2.3	81	87	4	264	42	19	7	31	1.78
49773771--49773932	27	5.9	27	79	9	107	41	17	8	32	1.78
49773692--49773927	54	4.4	54	84	3	226	42	18	6	32	1.77
49773973--49774046	27	2.7	27	76	12	71	37	20	20	21	1.94
49775622--49775883	68	4.0	64	76	11	221	30	16	28	24	1.96
49778632--49778766	42	3.2	42	97	0	252	31	14	20	34	1.92
49778788--49778894	31	3.5	31	88	0	169	28	18	25	28	1.98
49781614--49781659	24	1.9	24	82	8	58	41	4	30	23	1.74
49796083--49796151	27	2.6	26	86	2	93	42	23	5	28	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343