genome.fa.s10.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  120  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40328348--40328473	27	4.7	27	84	3	155	37	21	14	26	1.92
40328359--40328675	54	6.1	54	79	10	302	35	20	17	26	1.95
40328458--40328488	15	2.1	15	100	0	62	32	32	6	29	1.83
40328431--40328515	42	2.0	42	95	0	152	36	22	12	28	1.91
40328473--40328692	27	8.1	27	82	2	262	34	18	20	26	1.96
40328409--40328541	69	1.9	69	89	3	205	36	21	14	27	1.92
40328377--40328567	96	2.0	96	88	2	285	36	21	14	26	1.93
40328350--40328595	123	2.0	123	84	3	316	35	21	15	27	1.94
40329115--40329162	19	2.5	19	89	0	78	35	22	33	8	1.84
40329420--40329471	27	2.0	26	88	3	77	19	26	19	34	1.95
40333388--40333434	20	2.3	21	92	3	78	65	10	10	12	1.46
40333388--40333447	20	3.0	20	87	2	75	63	11	13	11	1.53
40334450--40334546	6	15.8	6	74	16	83	46	15	18	19	1.84
40334434--40334558	31	4.1	31	86	3	164	48	15	17	19	1.82
40334501--40334558	19	3.4	19	65	30	58	46	17	17	18	1.84
40334972--40335161	27	7.0	27	84	4	168	41	5	21	31	1.76
40334972--40335161	54	3.5	53	85	2	218	41	5	21	31	1.76
40334972--40335161	81	2.3	81	84	3	231	41	5	21	31	1.76
40335153--40335204	27	1.9	27	88	7	79	28	11	19	40	1.86
40335182--40335307	27	4.7	27	75	12	116	30	10	21	38	1.87
40335113--40335307	54	3.6	54	76	2	178	31	9	20	38	1.85
40336707--40336808	40	2.6	39	83	7	125	26	26	24	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40344588--40344755	40	4.2	40	84	4	214	28	27	20	23	1.99
40344574--40344749	80	2.2	80	87	5	250	27	28	21	23	1.99
40348198--40348354	6	25.3	6	72	18	117	47	14	18	19	1.83
40348207--40348354	31	4.5	31	89	5	170	47	14	18	19	1.83
40348757--40348863	27	4.0	27	86	0	124	38	6	22	32	1.80
40348757--40348863	54	2.0	54	84	0	142	38	6	22	32	1.80
40348842--40349011	54	3.2	53	78	5	173	28	9	21	40	1.85
40348828--40349011	27	6.9	26	69	11	86	29	9	22	38	1.86
40350335--40350367	12	2.8	12	95	0	57	12	27	36	24	1.91
40353048--40353157	56	2.0	56	94	0	193	41	17	6	34	1.75
40365448--40365479	16	2.0	16	100	0	64	37	6	18	37	1.76
40372491--40372551	30	2.0	30	87	0	86	29	22	8	39	1.83
40376935--40376995	30	2.0	30	83	0	77	31	22	8	37	1.84
40389296--40389471	40	4.4	40	94	0	289	22	21	27	28	1.99
40394125--40394618	47	10.5	47	94	2	834	31	8	29	29	1.87
40394285--40394358	22	3.3	22	64	17	62	29	10	31	28	1.91
40394125--40394618	186	2.6	187	93	3	823	31	8	29	29	1.87
40397043--40397117	38	2.0	38	86	5	107	30	18	26	24	1.98
40397171--40397411	40	6.1	40	87	0	331	24	19	28	26	1.99
40397171--40397411	80	3.0	80	92	1	378	24	19	28	26	1.99
40400601--40400955	47	7.5	47	95	1	595	31	9	30	28	1.88
40407425--40407464	19	2.1	19	85	0	53	42	12	10	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40408081--40408238	27	5.9	27	82	5	185	32	10	18	37	1.85
40413876--40413911	17	2.0	20	84	15	51	66	0	11	22	1.22
40415619--40415758	43	3.3	43	67	15	112	30	25	17	26	1.98
40421971--40422009	19	2.1	19	85	0	51	48	10	5	35	1.59
40424670--40424813	40	3.6	40	82	3	182	25	25	23	25	2.00
40428613--40428834	40	5.6	40	85	5	279	23	22	26	26	2.00
40428613--40428834	81	2.8	79	86	6	288	23	22	26	26	2.00
40436740--40436963	40	5.6	40	81	3	225	25	21	26	26	2.00
40436744--40436930	83	2.3	80	84	4	223	24	21	27	25	1.99
40438502--40438636	43	3.2	43	78	16	156	31	26	17	23	1.97
40438502--40438656	43	3.6	42	77	10	145	30	25	18	25	1.97
40448009--40448060	26	2.0	25	85	14	70	30	26	3	38	1.74
40455726--40455894	86	2.0	86	95	0	302	34	8	17	39	1.81
40461786--40461840	27	2.0	27	85	0	74	40	7	14	38	1.74
40462065--40462297	49	4.7	50	78	4	229	24	18	27	29	1.98
40466883--40467066	40	4.6	40	82	6	196	23	20	27	28	1.99
40466883--40467063	80	2.3	81	83	9	221	23	20	27	27	1.99
40466951--40467113	40	4.1	39	82	7	141	26	20	26	26	1.99
40474613--40474796	40	4.6	40	82	6	196	23	20	27	28	1.99
40474613--40474793	80	2.3	81	83	9	221	23	20	27	27	1.99
40474694--40474843	40	3.8	38	80	10	131	25	22	28	24	1.99
40494280--40494434	27	5.7	27	78	7	145	27	28	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40494285--40494435	55	2.8	54	80	5	180	27	27	16	28	1.97
40502309--40502464	27	5.7	27	78	6	145	27	28	16	28	1.97
40502314--40502465	54	2.8	55	80	4	182	26	27	16	28	1.97
40506249--40506429	50	3.6	49	81	3	211	24	17	27	30	1.97
40508585--40508704	37	3.2	37	85	2	161	25	24	20	30	1.99
40510800--40510992	40	4.8	40	94	1	318	22	21	27	28	1.99
40514796--40515019	40	5.6	40	83	7	260	25	22	26	25	2.00
40520806--40520833	14	2.0	14	100	0	56	42	0	21	35	1.53
40525188--40525383	40	4.9	40	80	5	225	25	26	21	26	2.00
40525188--40525383	80	2.4	81	85	2	252	25	26	21	26	2.00
40531736--40531761	13	2.0	13	100	0	52	69	0	7	23	1.14
40532313--40532354	21	2.0	21	90	0	66	19	45	14	21	1.85
40540958--40541034	34	2.3	34	84	8	104	24	22	19	33	1.97
40548383--40548446	27	2.4	27	84	5	85	20	25	18	35	1.95
40548477--40548604	27	4.7	27	78	11	84	32	9	17	39	1.82
40548497--40548665	54	3.1	54	79	10	141	34	10	14	40	1.80
40548573--40548685	27	4.2	27	67	15	72	31	7	17	42	1.78
40548562--40548665	54	1.9	54	86	3	147	32	8	16	42	1.79
40548562--40548677	54	2.1	54	84	6	146	31	8	18	42	1.80
40548717--40548808	27	3.4	27	87	0	130	40	7	23	28	1.82
40551147--40551229	31	2.7	31	92	3	143	27	25	16	30	1.97
40552417--40552499	28	3.1	26	80	14	82	34	8	15	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40552433--40552511	28	2.9	27	81	10	97	30	7	17	44	1.77
40552424--40552521	27	3.6	26	80	11	99	28	6	19	45	1.74
40552477--40552599	27	4.6	27	79	6	117	27	8	20	43	1.81
40552478--40552579	53	1.9	53	87	0	150	29	8	19	42	1.81
40552619--40552722	27	3.9	26	83	6	93	39	10	22	27	1.87
40552635--40552722	27	3.3	27	90	0	131	39	9	25	26	1.85
40554346--40554414	27	2.5	28	81	6	97	30	15	15	37	1.90
40555492--40555556	27	2.4	27	82	5	78	21	23	16	38	1.93
40555609--40555742	27	4.9	28	75	10	107	32	8	17	41	1.79
40555670--40555795	54	2.3	54	82	8	157	29	8	21	40	1.83
40555672--40555795	27	4.6	27	78	2	133	28	8	21	41	1.83
40555815--40555894	27	3.0	26	82	8	81	42	11	20	26	1.85
40555827--40555919	27	3.4	27	83	2	114	41	8	22	26	1.82
40557733--40557774	18	2.3	18	83	0	57	54	16	4	23	1.61
40557834--40557873	20	2.0	20	85	9	55	35	12	5	47	1.63
40558247--40558287	19	2.1	20	90	4	66	0	26	2	70	0.99
40558371--40558402	15	2.1	16	88	11	50	53	9	0	37	1.34
40563321--40563452	18	7.3	18	84	0	147	35	13	9	40	1.78
40563331--40563470	36	3.9	36	80	0	163	35	14	11	39	1.82
40563331--40563470	54	2.6	54	89	2	210	35	14	11	39	1.82
40563353--40563470	18	6.6	17	75	9	58	33	14	12	38	1.84
40563596--40563710	51	2.2	53	81	4	126	42	18	20	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40563852--40563889	20	1.9	20	89	10	60	34	15	5	44	1.69
40564401--40564442	15	2.6	16	85	14	52	50	9	0	40	1.35
40567062--40567106	23	2.0	23	81	0	54	20	11	24	44	1.83
40570586--40570804	44	5.0	43	82	6	253	30	27	16	25	1.97
40570586--40570804	87	2.5	87	86	1	305	30	27	16	25	1.97
40571912--40571940	14	2.0	15	93	6	51	51	20	0	27	1.47
40573342--40573385	22	2.0	22	100	0	88	13	18	9	59	1.60
40590464--40590493	14	2.1	14	100	0	60	33	20	6	40	1.78
40592853--40593002	27	5.4	28	92	1	214	26	12	28	33	1.92
40592878--40593002	55	2.3	55	92	2	207	26	12	28	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343