Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  314  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101643663--101644146
177
2.7
177
96
0
878
30
20
23
26
1.98
101644033--101644291
133
1.9
133
93
0
446
32
19
24
24
1.98
101643396--101644448
487
2.2
487
89
0
1590
30
20
22
25
1.98
101648962--101648995
17
2.0
17
94
0
59
35
8
11
44
1.72
101650126--101650245
62
1.9
62
89
3
188
30
5
23
40
1.78
101651707--101651753
23
2.0
23
91
0
76
53
0
12
34
1.39
101651858--101651934
24
3.4
22
76
15
61
44
0
1
54
1.08
101661429--101661487
30
2.0
30
83
6
75
38
13
13
33
1.84
101664994--101665420
172
2.5
172
84
3
551
35
13
14
36
1.86
101673157--101673194
19
2.0
19
85
10
51
36
10
0
52
1.36
101675318--101675445
41
3.1
40
69
19
104
57
8
7
25
1.55
101678548--101678603
28
2.0
28
92
0
94
33
23
12
30
1.92
101680405--101680439
17
2.1
17
100
0
70
45
5
11
37
1.64
101683003--101683038
12
3.0
12
91
0
54
52
2
0
44
1.15
101684156--101684196
3
13.7
3
100
0
82
34
31
0
34
1.58
101685636--101685704
35
2.0
35
97
0
129
17
52
11
18
1.74
101686534--101686598
3
21.3
3
87
3
94
36
0
0
63
0.95
101686888--101686942
22
2.5
23
77
13
62
43
0
3
52
1.18
101699341--101699887
73
7.7
72
85
9
671
31
17
20
31
1.95
101700483--101700551
35
2.0
35
100
0
138
17
50
11
20
1.76
101701381--101701440
3
20.3
3
77
16
63
33
0
1
65
1.03
101701381--101701439
17
3.5
17
86
9
70
33
0
1
64
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101701726--101701775
23
2.1
24
82
10
59
40
0
4
56
1.18
101701723--101701781
25
2.4
25
78
10
61
40
0
3
55
1.16
101709008--101709083
36
2.1
36
100
0
152
25
13
22
39
1.90
101709617--101709693
39
1.9
41
82
10
97
12
7
6
72
1.26
101709694--101709740
10
5.0
9
80
17
51
25
2
0
72
0.96
101709694--101709733
14
2.8
14
88
11
55
22
2
0
75
0.93
101709694--101709740
24
2.0
24
83
8
60
25
2
0
72
0.96
101709694--101709740
19
2.5
17
86
13
58
25
2
0
72
0.96
101709694--101709738
14
3.2
13
84
12
54
24
2
0
73
0.95
101709750--101709806
23
2.6
21
78
13
60
42
0
5
52
1.24
101709777--101709895
23
5.5
20
71
15
69
39
1
0
57
1.14
101709768--101709898
21
5.9
22
71
12
90
39
1
0
58
1.13
101709846--101709905
21
2.8
21
82
12
70
41
1
0
56
1.09
101712578--101712794
40
5.5
40
90
3
316
25
27
22
24
2.00
101716288--101716344
30
1.9
30
82
13
73
47
3
0
49
1.18
101730208--101730259
20
2.7
19
88
5
77
55
5
1
36
1.35
101730208--101730267
20
3.2
19
86
6
68
53
6
1
38
1.37
101730534--101730580
17
2.7
16
87
12
58
72
0
6
21
1.07
101731068--101731102
18
1.9
17
88
11
52
25
8
0
65
1.21
101731547--101731627
38
2.1
38
86
6
108
40
1
3
54
1.26
101735774--101735803
6
5.0
6
100
0
60
50
16
33
0
1.46
101736512--101736605
31
3.0
31
96
0
170
14
29
4
51
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101736524--101736622
31
3.2
31
88
0
99
13
32
3
51
1.56
101740266--101740307
15
2.8
15
92
0
66
26
14
14
45
1.83
101741830--101741902
32
2.5
27
76
19
83
26
4
19
50
1.65
101741843--101741903
32
1.9
32
93
0
104
27
4
18
49
1.68
101743459--101743563
52
2.0
52
85
3
140
31
20
17
31
1.95
101745765--101745897
64
2.0
66
91
4
216
40
0
17
42
1.49
101747802--101747827
2
13.0
2
100
0
52
50
0
0
50
1.00
101748115--101748170
15
3.7
15
87
2
76
35
19
1
42
1.62
101748115--101748174
30
2.0
31
90
3
95
35
21
1
41
1.63
101754348--101754401
23
2.3
23
87
0
81
29
25
5
38
1.79
101757479--101757536
25
2.3
25
82
8
73
51
1
10
36
1.46
101757858--101757975
3
40.0
3
68
16
59
63
1
7
27
1.31
101757892--101757944
20
2.7
19
82
8
70
64
0
7
28
1.21
101762624--101762672
23
2.1
23
88
0
71
42
0
2
55
1.11
101767960--101768004
20
2.3
19
88
3
63
24
6
8
60
1.51
101770764--101770813
21
2.4
21
81
15
59
32
34
8
26
1.85
101777766--101777807
20
2.1
20
100
0
84
50
0
9
40
1.35
101779625--101779665
12
3.3
13
83
10
50
60
2
2
34
1.23
101779735--101779823
44
1.9
48
82
13
116
61
2
7
28
1.36
101780887--101780927
20
2.0
21
86
13
59
36
7
17
39
1.77
101781424--101781448
13
1.9
13
100
0
50
36
0
0
64
0.94
101781908--101781957
23
2.1
24
88
3
75
44
2
2
52
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101782976--101783027
21
2.5
22
75
12
56
46
0
3
50
1.20
101783258--101783299
19
2.2
19
91
0
66
64
0
33
2
1.07
101783998--101784064
18
3.7
18
81
0
80
35
11
17
34
1.87
101783999--101784074
36
2.1
36
85
0
98
35
14
17
32
1.90
101791391--101791539
54
2.8
54
75
0
154
28
19
19
32
1.96
101794741--101794787
21
2.2
22
92
3
78
21
19
38
21
1.94
101795859--101795908
24
2.1
24
100
0
100
36
4
8
52
1.50
101799204--101799233
3
10.0
3
100
0
60
66
0
0
33
0.92
101799492--101799535
17
2.8
15
78
21
54
70
2
2
25
1.10
101802338--101802396
15
3.7
15
79
6
55
54
8
5
32
1.53
101802606--101802645
19
2.1
19
85
4
53
27
7
10
55
1.60
101802855--101802912
21
2.8
21
80
12
66
15
12
8
63
1.50
101802873--101802911
20
2.0
20
90
10
62
10
12
10
66
1.44
101809154--101809204
25
2.0
26
84
3
68
49
0
1
49
1.12
101809116--101809214
22
4.5
21
68
19
60
39
3
1
56
1.21
101839820--101839882
24
2.6
24
69
14
58
47
14
14
23
1.80
101843864--101844134
50
5.4
50
93
1
445
35
15
22
26
1.94
101844118--101844319
31
6.5
31
87
2
280
28
17
25
27
1.98
101844357--101844482
47
2.7
47
83
4
148
28
15
25
30
1.95
101849502--101849825
162
2.0
163
96
0
605
26
19
20
33
1.97
101858144--101858188
23
1.9
23
86
4
63
24
17
0
57
1.40
101860236--101860315
40
2.0
40
100
0
160
42
17
22
17
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101869243--101869292
26
2.0
24
84
7
64
62
6
0
32
1.20
101869232--101869307
22
3.5
20
73
18
62
69
5
0
25
1.09
101869368--101869400
15
2.1
16
88
11
50
69
0
0
30
0.88
101869916--101869977
31
2.0
31
84
6
81
54
11
3
30
1.51
101874753--101874792
16
2.4
17
87
4
55
62
0
0
37
0.95
101881253--101881370
31
3.9
31
76
10
100
43
6
0
49
1.35
101881253--101881370
61
1.9
61
81
6
141
43
6
0
49
1.35
101881500--101881530
14
2.1
15
94
5
55
70
0
0
29
0.87
101885173--101885233
28
2.1
29
81
9
79
59
1
0
39
1.08
101885456--101885499
21
2.0
23
86
13
65
27
0
0
72
0.85
101888847--101888873
14
1.9
14
100
0
54
40
0
0
59
0.98
101890896--101890929
17
2.0
17
100
0
68
5
0
41
52
1.25
101891608--101891669
16
3.8
16
79
10
63
24
9
16
50
1.75
101891706--101891736
16
1.9
16
100
0
62
32
6
3
58
1.40
101893703--101893730
6
4.7
6
100
0
56
0
0
50
50
1.00
101894461--101894518
12
4.8
12
84
0
80
0
20
32
46
1.51
101894461--101894513
6
8.8
6
87
0
61
0
20
33
45
1.52
101894467--101894518
9
5.8
9
83
0
59
0
21
32
46
1.52
101894464--101894510
3
15.7
3
90
0
58
0
23
34
42
1.54
101901084--101901241
80
2.0
80
87
5
230
24
34
6
34
1.81
101902335--101902392
29
2.0
29
100
0
116
37
17
24
20
1.93
101902992--101903073
42
2.0
40
90
9
132
26
8
29
35
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101908289--101908344
23
2.5
23
88
2
78
64
14
7
14
1.48
101913831--101913863
15
2.1
16
88
5
50
48
3
0
48
1.17
101913813--101913862
21
2.2
21
82
10
55
40
6
2
52
1.38
101915280--101915347
7
9.1
7
73
20
50
27
2
0
69
1.03
101915286--101915323
17
2.2
17
95
0
67
31
0
0
68
0.90
101915286--101915345
21
3.0
21
81
13
58
28
3
0
68
1.05
101916028--101916330
127
2.4
127
84
0
408
37
19
16
26
1.93
101919179--101919220
13
3.2
13
86
6
50
69
2
11
16
1.29
101919185--101919222
13
2.9
14
84
7
53
65
2
15
15
1.38
101919243--101919424
75
2.5
74
86
2
258
30
22
15
31
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343