genome.fa.s10.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  118  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39709150--39709341	43	4.6	41	76	9	151	27	19	29	24	1.98
39713899--39713960	29	2.2	28	88	5	90	41	1	24	32	1.64
39717275--39717335	30	2.0	30	83	0	77	31	22	8	37	1.84
39721691--39721751	30	2.0	30	83	0	77	31	22	8	37	1.84
39724319--39724492	46	3.8	45	79	8	190	28	27	20	24	1.99
39724327--39724497	92	1.8	93	92	1	290	27	28	20	23	1.99
39739502--39739546	21	2.1	21	100	0	90	37	31	8	22	1.85
39742655--39742696	21	2.0	21	100	0	84	38	19	9	33	1.84
39743714--39743958	49	4.9	49	77	4	240	31	25	18	25	1.98
39743715--39743958	99	2.5	98	79	6	260	31	25	18	25	1.98
39748707--39748884	40	4.5	40	90	2	270	24	21	26	26	2.00
39750361--39750521	49	3.3	49	68	11	141	22	26	19	30	1.98
39750361--39750588	97	2.4	97	89	0	348	22	28	18	30	1.97
39750408--39750590	48	3.8	48	69	9	156	22	30	16	30	1.96
39750563--39750862	46	6.5	46	76	9	263	23	28	18	29	1.98
39750610--39750865	93	2.7	93	90	1	379	23	28	19	29	1.98
39750563--39750825	139	1.9	140	81	10	324	23	28	18	29	1.98
39752770--39752937	40	4.2	40	83	4	106	25	27	23	23	2.00
39752793--39752937	40	3.6	40	85	4	193	23	26	24	25	2.00
39760768--39760884	40	2.9	40	82	3	128	24	25	22	27	2.00
39761581--39761618	19	2.1	18	85	9	51	52	18	26	2	1.58
39776139--39776233	29	3.3	29	83	1	120	26	27	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39776110--39776226	58	2.0	57	83	4	146	25	29	17	28	1.97
39777649--39777680	16	2.0	16	93	0	55	9	6	34	50	1.60
39783865--39783931	28	2.4	28	92	0	107	16	37	22	23	1.94
39791954--39792686	49	15.2	49	92	2	1188	32	8	29	29	1.86
39791954--39792686	145	5.1	145	93	2	1217	32	8	29	29	1.86
39791954--39792686	96	7.6	96	93	1	1195	32	8	29	29	1.86
39806277--39806391	43	2.7	42	81	2	131	29	28	15	26	1.96
39810457--39810494	19	2.0	20	85	15	53	39	23	0	36	1.55
39810719--39810887	46	3.7	46	80	10	209	30	27	20	21	1.98
39810724--39810894	93	1.8	93	92	0	288	29	28	21	21	1.98
39815517--39815581	33	2.0	33	94	5	116	27	21	29	21	1.99
39818301--39818471	93	1.8	93	91	0	279	29	28	21	20	1.98
39818296--39818468	46	3.7	46	78	10	190	30	27	20	20	1.98
39818344--39818487	46	3.1	45	72	18	127	29	27	20	22	1.98
39818891--39818950	30	2.0	30	86	0	84	33	25	5	36	1.78
39826593--39826824	49	4.7	49	81	5	286	29	26	18	25	1.98
39826593--39826818	100	2.3	98	85	3	283	30	26	17	25	1.98
39829941--39830113	49	3.6	49	72	10	165	22	26	20	30	1.99
39829941--39830168	97	2.4	97	91	0	366	22	28	19	29	1.98
39829988--39830170	48	3.8	48	73	9	183	21	30	18	29	1.97
39830143--39830395	46	5.5	45	79	6	197	23	28	17	29	1.97
39831715--39831826	29	3.9	29	83	3	129	25	33	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39844460--39844501	20	2.1	20	90	0	66	52	19	23	4	1.65
39846529--39846706	27	6.6	27	84	3	205	29	28	15	26	1.96
39846550--39846705	82	1.9	81	88	3	233	29	28	15	26	1.96
39850345--39850529	79	2.3	81	84	7	236	25	27	22	24	2.00
39850345--39850529	40	4.7	40	83	7	234	25	27	22	24	2.00
39860111--39860165	28	2.0	28	89	3	85	20	34	21	23	1.97
39865330--39865544	40	5.4	40	89	3	287	24	21	27	26	2.00
39872566--39872666	49	2.1	49	86	3	141	24	22	20	31	1.98
39872595--39872707	50	2.3	49	81	7	122	25	23	22	29	1.99
39889664--39889771	23	4.7	23	81	4	128	23	21	24	31	1.98
39894317--39894433	40	2.9	40	84	6	139	29	17	24	29	1.97
39894316--39894456	40	3.5	41	82	7	137	26	17	26	29	1.97
39899164--39899339	46	3.8	46	77	1	136	23	30	17	28	1.97
39902612--39902726	31	3.7	31	94	1	196	28	26	16	28	1.97
39902750--39902841	42	2.2	42	96	0	166	31	20	16	31	1.95
39902962--39903059	25	4.0	23	80	9	88	26	22	23	27	1.99
39903867--39903931	27	2.4	27	79	5	69	20	26	18	35	1.95
39903962--39904198	27	8.7	27	77	7	149	31	8	20	40	1.82
39904073--39904231	54	2.9	54	78	3	160	30	10	20	38	1.86
39904073--39904231	81	2.0	81	81	9	191	30	10	20	38	1.86
39904073--39904231	27	5.9	27	76	7	135	30	10	20	38	1.86
39904230--39904346	27	4.3	27	82	0	144	41	10	23	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39912213--39912403	67	2.7	69	82	13	214	26	27	20	25	1.99
39912258--39912460	40	5.2	40	81	9	249	24	27	22	25	2.00
39912260--39912460	75	2.6	78	85	7	264	24	26	22	25	2.00
39921206--39921417	46	4.5	48	77	5	202	29	18	26	24	1.98
39921206--39921417	48	4.5	45	74	7	154	29	18	26	24	1.98
39921203--39921417	94	2.3	94	86	1	279	29	19	26	24	1.98
39923844--39923919	40	1.9	40	83	5	100	36	27	14	21	1.92
39926443--39926496	15	3.5	15	92	5	81	7	16	40	35	1.77
39926443--39926496	17	3.3	16	89	10	83	7	16	40	35	1.77
39941061--39941104	19	2.3	20	84	7	56	38	22	0	38	1.55
39954004--39954268	40	6.7	40	85	6	333	25	26	22	26	2.00
39958583--39958914	48	6.9	48	80	3	335	28	18	28	25	1.98
39958582--39958914	96	3.4	96	83	3	402	28	18	28	24	1.98
39958583--39958917	144	2.3	145	86	2	460	28	18	27	25	1.98
39960261--39960356	35	2.7	35	81	3	120	36	20	12	30	1.90
39967940--39968063	35	3.5	35	87	1	158	41	20	8	29	1.82
39971172--39971205	10	3.3	10	84	8	50	41	0	11	47	1.40
39971162--39973945	593	4.7	588	81	5	3048	34	14	13	38	1.84
39973175--39973214	15	2.7	15	80	3	55	50	0	5	45	1.23
39973524--39973557	10	3.3	10	88	8	50	41	0	8	50	1.34
39987045--39987237	6	31.3	6	68	18	94	49	12	17	20	1.78
39987077--39987147	19	3.8	19	78	10	74	50	14	16	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39987111--39987166	25	2.2	25	90	0	85	48	14	17	19	1.81
39987068--39987146	37	2.1	37	88	0	113	53	13	13	18	1.73
39987078--39987233	62	2.5	62	84	0	195	48	12	17	20	1.80
39987171--39987237	25	2.7	25	86	9	100	49	11	17	20	1.79
39987356--39987415	27	2.3	26	85	2	75	35	20	23	21	1.96
39987383--39987524	67	2.1	67	86	5	194	30	22	28	19	1.98
39987454--39987505	27	2.0	26	84	3	68	34	21	26	17	1.95
39987750--39987947	27	7.3	27	86	4	240	24	21	18	35	1.96
39987750--39987938	54	3.5	54	91	0	288	23	22	19	34	1.97
39987754--39987938	81	2.3	81	96	0	336	23	23	18	34	1.96
39987984--39988324	27	12.7	26	76	11	145	31	9	19	38	1.85
39987982--39988333	81	4.3	81	83	4	372	32	9	19	37	1.85
39988049--39988324	27	10.2	27	85	0	363	32	9	18	38	1.83
39994954--39995072	43	2.8	41	75	14	116	24	22	27	25	2.00
39998965--39999189	40	5.6	40	83	5	258	25	24	26	23	2.00
39998965--39999225	80	3.3	80	83	3	312	26	24	26	23	2.00
39998965--39999189	120	1.9	121	85	4	312	25	24	26	23	2.00
40005552--40005584	16	2.0	17	88	5	50	39	0	3	57	1.14
40006136--40006206	34	2.1	33	94	2	124	33	11	11	43	1.76
40007949--40007979	15	2.1	15	100	0	62	16	12	19	51	1.76
40011542--40011646	53	2.0	53	84	0	138	37	20	23	19	1.94
40018894--40019122	53	4.3	53	77	6	201	38	18	23	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40020513--40020593	26	3.2	26	70	19	80	29	30	16	23	1.96
40022777--40022830	15	3.7	15	72	20	51	61	18	12	7	1.54
40025662--40025850	101	1.9	99	86	4	272	28	29	17	24	1.97
40036401--40036425	8	3.1	8	100	0	50	28	12	48	12	1.76
40042533--40042589	26	2.2	26	80	0	69	31	14	17	36	1.89
40045608--40045693	18	4.8	18	89	2	120	47	15	19	17	1.82
40045608--40045693	35	2.4	36	88	1	120	47	15	19	17	1.82
40046008--40046195	27	7.0	27	85	1	198	40	17	14	27	1.88
40046040--40046195	27	5.8	27	88	1	215	40	17	14	27	1.89
40047417--40047519	44	2.3	45	83	5	129	44	18	15	21	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343