genome.fa.s10.2.7.7.80.10.50.1000.275.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  275  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91230249--91230443	50	3.9	48	82	7	219	25	18	28	28	1.98
91234543--91234648	55	1.9	55	84	0	140	20	29	23	26	1.99
91248334--91248422	26	3.3	26	72	9	79	28	14	23	33	1.94
91248240--91248438	55	3.6	55	77	4	213	33	14	22	29	1.94
91248248--91248454	110	1.9	110	80	2	245	32	15	20	31	1.94
91254344--91254466	51	2.4	51	81	5	142	26	29	17	26	1.97
91254374--91254626	51	5.0	51	78	3	197	31	26	16	26	1.96
91259620--91259685	31	2.1	31	94	0	114	15	27	34	22	1.94
91262077--91262150	37	2.0	37	94	0	130	31	14	24	29	1.95
91265306--91265481	46	3.8	46	77	12	189	21	19	28	30	1.98
91265303--91265472	93	1.8	93	93	0	295	21	20	28	28	1.98
91272874--91273049	46	3.8	46	79	12	216	20	21	29	28	1.98
91272871--91273042	93	1.8	93	96	0	317	20	21	29	27	1.98
91273769--91273845	38	2.0	38	94	0	136	35	16	9	38	1.81
91276940--91277117	27	6.5	27	94	2	284	26	13	28	31	1.94
91276940--91277117	55	3.3	55	95	0	304	26	13	28	31	1.94
91276940--91277117	82	2.2	82	91	2	286	26	13	28	31	1.94
91279153--91279276	45	2.8	44	80	9	121	25	28	21	25	1.99
91279456--91279625	43	4.0	43	90	1	254	32	32	22	12	1.91
91279597--91279680	38	2.2	38	86	0	123	32	26	19	22	1.97
91283842--91283878	18	2.1	18	100	0	74	35	10	5	48	1.61
91304577--91304647	18	3.8	19	80	14	78	25	1	1	71	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91304581--91304636	26	2.1	27	83	6	69	28	1	1	67	1.10
91309428--91309488	30	2.0	30	87	6	88	14	27	32	24	1.95
91311219--91311249	14	2.2	14	94	0	53	74	0	0	25	0.82
91311367--91311406	19	2.1	19	95	0	71	75	0	0	25	0.81
91311779--91311835	30	1.9	30	88	0	87	12	36	31	19	1.89
91311612--91312035	199	2.1	199	93	0	740	19	31	24	24	1.98
91315996--91316033	3	12.7	3	100	0	76	34	0	0	65	0.93
91316609--91316668	26	2.3	26	76	18	63	31	5	6	56	1.47
91316692--91316734	18	2.4	18	84	0	59	30	11	2	55	1.48
91319200--91319260	30	2.0	30	83	0	77	18	27	32	21	1.96
91322794--91322892	50	2.0	50	89	0	153	47	16	5	31	1.68
91323734--91323781	14	3.4	15	78	18	50	60	4	10	25	1.47
91323740--91323782	14	3.0	15	83	6	54	53	4	11	30	1.57
91325719--91325769	25	2.0	25	88	0	75	62	15	5	15	1.50
91326666--91326735	32	2.2	32	97	0	131	45	7	15	31	1.73
91328842--91328930	38	2.3	38	86	7	119	30	16	16	35	1.92
91330429--91330520	40	2.3	38	75	15	89	33	2	2	61	1.20
91330571--91330613	12	3.6	12	81	9	52	34	4	0	60	1.17
91330583--91330632	21	2.5	21	78	18	61	32	2	4	62	1.25
91334645--91334677	14	2.2	16	89	10	52	21	21	12	45	1.84
91336863--91336919	28	2.0	28	100	0	114	43	24	17	14	1.86
91342767--91343422	86	7.6	85	67	19	354	33	21	19	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91342763--91343509	173	4.3	173	90	2	1038	33	20	19	25	1.96
91342804--91343472	174	3.8	175	91	1	1053	34	20	19	25	1.96
91344684--91344745	20	3.0	19	76	17	52	27	1	3	67	1.15
91345170--91345207	21	1.9	20	89	10	60	31	2	5	60	1.33
91352897--91352922	13	2.0	13	100	0	52	46	23	7	23	1.78
91353478--91353510	17	1.9	17	93	0	57	66	0	0	33	0.92
91354750--91354801	9	5.6	9	81	4	50	36	0	1	61	1.07
91354747--91354781	19	1.9	19	88	11	56	40	0	2	57	1.14
91356987--91357038	21	2.3	24	84	15	76	71	3	0	25	1.03
91359483--91359526	23	2.0	23	81	4	54	50	22	11	15	1.76
91371391--91371441	24	2.2	23	85	3	66	15	1	3	78	0.99
91373659--91373732	23	3.1	24	76	5	69	39	12	24	24	1.89
91382821--91382863	21	2.2	20	87	8	61	37	16	16	30	1.91
91382934--91382980	25	2.0	24	83	8	60	29	21	23	25	1.99
91389019--91389056	19	2.0	20	84	5	51	36	2	15	44	1.61
91390901--91390958	21	2.7	22	84	10	77	34	12	22	31	1.91
91394826--91394886	28	2.2	28	96	0	113	39	21	6	32	1.79
91398303--91398400	51	1.9	51	93	0	169	25	13	20	40	1.88
91399399--91399510	47	2.4	47	80	3	127	23	16	25	33	1.96
91423837--91423885	21	2.3	21	100	0	98	24	20	28	26	1.99
91426699--91426745	23	2.0	23	95	0	85	19	12	14	53	1.73
91427940--91428010	25	2.8	26	86	4	108	25	22	23	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91436239--91436308	27	2.6	26	80	6	77	32	18	22	25	1.97
91441824--91441877	27	2.0	27	82	7	65	44	5	1	48	1.37
91451050--91451102	28	1.9	27	85	11	72	20	11	5	62	1.49
91455568--91455625	30	1.9	30	96	0	107	39	20	12	27	1.88
91458064--91458231	47	3.6	46	78	10	171	29	17	28	24	1.98
91462122--91462167	20	2.3	20	82	14	60	28	28	17	26	1.98
91462122--91462176	19	2.8	20	78	13	60	34	25	16	23	1.95
91481304--91481391	27	3.3	27	79	4	97	29	12	17	40	1.86
91481316--91481720	54	7.5	53	76	9	345	31	8	19	40	1.82
91481316--91481721	27	15.0	27	74	10	258	31	8	19	40	1.82
91481317--91481720	107	3.7	106	84	6	467	31	8	19	40	1.82
91489323--91489403	24	3.3	26	84	10	91	29	22	24	23	1.99
91489347--91489403	24	2.3	25	90	6	98	31	19	28	21	1.97
91494661--91494690	15	2.0	15	93	0	51	46	6	10	36	1.64
91496664--91496720	27	2.1	27	87	3	80	50	5	5	38	1.47
91498147--91498193	24	2.0	24	91	8	78	51	2	2	44	1.25
91501155--91501192	16	2.4	16	95	0	67	42	15	7	34	1.76
91515127--91515250	40	3.1	40	94	0	203	27	25	23	24	2.00
91518026--91518262	40	5.9	40	89	2	332	26	20	27	25	1.99
91526404--91526508	8	11.7	9	71	17	51	60	0	2	36	1.18
91526395--91526508	17	6.5	17	68	21	58	59	0	3	35	1.20
91526396--91526520	26	5.1	26	64	20	63	60	0	3	35	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91527484--91527591	26	4.2	26	93	0	189	32	7	24	36	1.83
91529350--91529636	137	2.1	137	94	0	502	25	19	22	32	1.97
91530855--91530884	12	2.5	12	100	0	60	10	26	50	13	1.73
91535666--91535773	26	4.2	26	93	0	189	32	7	24	36	1.83
91537225--91537277	26	2.0	26	85	7	72	37	22	15	24	1.92
91537528--91537811	137	2.1	137	92	2	473	25	17	24	32	1.97
91541318--91541352	18	1.9	18	88	0	52	45	2	2	48	1.32
91542343--91542394	20	2.7	19	77	11	52	25	3	7	63	1.38
91542593--91542631	17	2.3	16	91	8	60	23	2	0	74	0.94
91552362--91552398	18	2.1	18	94	0	65	43	24	8	24	1.81
91553692--91553767	39	1.9	39	84	5	100	36	34	13	15	1.87
91556283--91556330	20	2.3	22	79	13	57	25	8	4	62	1.41
91556359--91556383	13	1.9	13	100	0	50	48	4	0	48	1.20
91556617--91556648	12	2.5	13	95	5	57	3	0	12	84	0.74
91559761--91559832	37	1.9	37	94	0	126	26	15	19	38	1.91
91573727--91573778	19	2.9	17	75	10	59	25	15	13	46	1.82
91574073--91574100	13	2.2	13	100	0	56	21	14	0	64	1.29
91574606--91574643	19	2.0	20	94	5	69	52	0	26	21	1.47
91579510--91579567	24	2.6	21	80	15	71	25	18	20	34	1.96
91579521--91579568	24	2.0	24	95	0	87	27	16	18	37	1.92
91584219--91584258	21	2.0	20	90	5	62	17	22	35	25	1.95
91596728--91596895	43	4.0	42	77	7	160	31	27	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91597710--91597734	4	6.2	4	100	0	50	0	24	0	76	0.80
91598506--91598558	5	10.6	5	83	0	52	33	5	5	54	1.47
91598511--91598559	25	2.0	25	83	0	62	32	6	8	53	1.55
91602744--91602855	43	2.7	41	79	8	109	23	16	25	34	1.95
91602771--91602855	41	2.0	43	84	4	111	22	15	27	35	1.94
91602974--91603014	19	2.2	19	100	0	82	29	4	29	36	1.78
91605501--91605540	20	1.9	20	85	10	53	35	2	7	55	1.42
91605830--91606066	130	1.8	129	81	8	293	32	14	15	37	1.88
91606313--91606356	3	14.7	3	90	0	70	65	29	2	2	1.16
91608050--91608221	44	3.9	44	88	1	229	27	20	19	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343